BAC Information

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BAC

Clone NameB6Ng01-071J19
Chromosome6 (Build37)
Map Location 42,368,977 - 42,370,069
singlet/doubletsinglet
Overlap genenone
Upstream geneEG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135
Downstream geneTas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1, LOC665747
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071J19.bB6Ng01-071J19.g
ACCDH889262DH889263
length1,093370
definitionDH889262|Mus musculus domesticus DNA, BAC clone: B6Ng01-071J19, 5' end.DH889263|Mus musculus domesticus DNA, BAC clone: B6Ng01-071J19, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcatacttgtatgacacagtactctacctactgaggcatcttgc
cagttcaagtgagagagagatcgctttctgtctccagggataaaggattt
agaactaaaatttgaggatcgtggctctctgctctgttgacaaactcttt
ggattattacgacttgggtcatcattaaaaacaggtcccaaccaatcctg
atgcagaaagaccacattatatgctacaccactgcagtctcatcagcaat
ggactacgatatgatgaaggtctcacaatattaaaaaaaagttcatagaa
ccattgtaacacaaagaacaactcacatgtttgtggggatgctggtataa
acacacctggtgtattgttagtcatagaagtaatcagcacaattatataa
atatgtaatacttgctaatgaaaaccaatgactatgcatttttgtcatgc
tatatgctttgctgttactttagagtgtagtcctgtctataaattgaaaa
cttacagtaagacagtaagcacataccccttgctgcacccccaaccagac
tcacacatcttcatttgccacatttcctgattgcattaagagactatggg
gagtgatcgcctgcgccatgaaggtttgggtgagtgtactctgggaggtg
aatggcagatgaaactgccaagtgactcacttctcagaaaatctccctgt
tgttaagcaatgtatgactgtactgtccctaatggtgggaagtttcaaag
agaaagaaaaataagcagtttaaagaattatagttagaagaagtctggat
tcctaacacctctttactatatttaaggaatctttaaggagctggggaaa
gagctggctttctcaagttttacccagtgccttgtgtggaggtgaatcag
cagcattccctatggttgctgagttgttaatctattattgtgattattat
aattgctctcaaaagtatcctttagccttcagaattgagatgagatttca
tggtctcaacagaaagactgttttgtatatgccacatgtatattgtacat
atgtacagtacatacacacatatctgcacataaggtataaatg
tggggactctttagagagccagagctctgagaaaggtgactgatgctttc
cctgctgctgttgcccctgctgctagtgctggttgctggattgctatttg
gatatatcctaactattaagatcaaaattgtcccaaggaacttaatgccc
ttaatcaacaggaagtactctaatgagatcaacaccccctttccctctat
ccttgtttttctcttagctagtgttggggggggggtagaaaaggagaagg
gtggtaggtaaaagaacccaataaaatttcctaaggtactgtttcattat
tttgtgcatctttactccttgctaattaattggttatatagcacactagt
cctgtatattttctctattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_42368977_42370069
seq2: B6Ng01-071J19.b_47_1139

seq1  GAATTCTCATACTTGTATGACACAGTACTCTACCTACTGAGGCATCTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATACTTGTATGACACAGTACTCTACCTACTGAGGCATCTTGC  50

seq1  CAGTTCAAGTGAGAGAGAGATCGCTTTCTGTCTCCAGGGATAAAGGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCAAGTGAGAGAGAGATCGCTTTCTGTCTCCAGGGATAAAGGATTT  100

seq1  AGAACTAAAATTTGAGGATCGTGGCTCTCTGCTCTGTTGACAAACTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTAAAATTTGAGGATCGTGGCTCTCTGCTCTGTTGACAAACTCTTT  150

seq1  GGATTATTACGACTTGGGTCATCATTAAAAACAGGTCCCAACCAATCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTATTACGACTTGGGTCATCATTAAAAACAGGTCCCAACCAATCCTG  200

seq1  ATGCAGAAAGACCACATTATATGCTACACCACTGCAGTCTCATCAGCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAAAGACCACATTATATGCTACACCACTGCAGTCTCATCAGCAAT  250

seq1  GGACTACGATATGATGAAGGTCTCACAATATTAAAAAAAAGTTCATAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTACGATATGATGAAGGTCTCACAATATTAAAAAAAAGTTCATAGAA  300

seq1  CCATTGTAACACAAAGAACAACTCACATGTTTGTGGGGATGCTGGTATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTAACACAAAGAACAACTCACATGTTTGTGGGGATGCTGGTATAA  350

seq1  ACACACCTGGTGTATTGTTAGTCATAGAAGTAATCAGCACAATTATATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCTGGTGTATTGTTAGTCATAGAAGTAATCAGCACAATTATATAA  400

seq1  ATATGTAATACTTGCTAATGAAAACCAATGACTATGCATTTTTGTCATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAATACTTGCTAATGAAAACCAATGACTATGCATTTTTGTCATGC  450

seq1  TATATGCTTTGCTGTTACTTTAGAGTGTAGTCCTGTCTATAAATTGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCTTTGCTGTTACTTTAGAGTGTAGTCCTGTCTATAAATTGAAAA  500

seq1  CTTACAGTAAGACAGTAAGCACATACCCCTTGCTGCACCCCCAACCAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGTAAGACAGTAAGCACATACCCCTTGCTGCACCCCCAACCAGAC  550

seq1  TCACACATCTTCATTTGCCACATTTCCTGATTGCATTAAGAGACTATGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACATCTTCATTTGCCACATTTCCTGATTGCATTAAGAGACTATGGG  600

seq1  GAGTGATCGCCTGCGCCATGAAGGTTTGGGTGAGTGTACTCTGGGAGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGATCGCCTGCGCCATGAAGGTTTGGGTGAGTGTACTCTGGGAGGTG  650

seq1  AATGGCAGATGAAACTGCCAAGTGACTCACTTCTCAGAAAATCTCCCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCAGATGAAACTGCCAAGTGACTCACTTCTCAGAAAATCTCCCTGT  700

seq1  TGTTAAGCAATGTATGACTGTACTGTCCCTAATGGTGGGAAGTTTCAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGCAATGTATGACTGTACTGTCCCTAATGGTGGGAAGTTTCAAAG  750

seq1  AGAAAGAAAAATAAGCAGTTTAAAGAATTATAGTTAGAAGAAGTCTGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAAATAAGCAGTTTAAAGAATTATAGTTAGAAGAAGTCTGGAT  800

seq1  TCCTAACACCTCTTTACTATATTTAAGGAATCTTTAAGGAGCTGGGGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAACACCTCTTTACTATATTTAAGGAATCTTTAAGGAGCTGGGGAAA  850

seq1  GAGCTGGCTTTCTCAAGTTTTACCCAGTGCCTTGTGTGGAGGTGAATCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGCTTTCTCAAGTTTTACCCAGTGCCTTGTGTGGAGGTGAATCAG  900

seq1  CAGCATTCCCTATGGTTGCTGAGTTGTTAATCTATTATTGTGATTATTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTCCCTATGGTTGCTGAGTTGTTAATCTATTATTGTGATTATTAT  950

seq1  AATTGCTCTCAAAAAGTTATCC-TTAGCCTTCAGAATTGAGATGAGATTT  999
      ||||||||||||||   ||||| |||||||||||||||||||||||||||
seq2  AATTGCTCTCAAAA--GTATCCTTTAGCCTTCAGAATTGAGATGAGATTT  998

seq1  CATGGTCTCAACAGAAAAGACTGTTTTGTATATG-CACATGTATA-TGTA  1047
      |||||||||||||| ||||||||||||||||||| |||||||||| ||||
seq2  CATGGTCTCAACAG-AAAGACTGTTTTGTATATGCCACATGTATATTGTA  1047

seq1  CATATGTACAAGTACATACACACATATCTGCACAT-AGGTATAAATG  1093
      ||||||||| ||||||||||||||||||||||||| |||||||||||
seq2  CATATGTAC-AGTACATACACACATATCTGCACATAAGGTATAAATG  1093