BAC Information

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BAC

Clone NameB6Ng01-073A06
Chromosome6 (Build37)
Map Location 110,552,401 - 110,654,772
singlet/doubletdoublet
Overlap geneGrm7
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073A06.bB6Ng01-073A06.g
ACCDH890268DH890269
length1,065855
definitionDH890268|Mus musculus domesticus DNA, BAC clone: B6Ng01-073A06, 5' end.DH890269|Mus musculus domesticus DNA, BAC clone: B6Ng01-073A06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,653,702 - 110,654,772)(110,552,401 - 110,553,257)
sequence
gaattcatagtggccacattttacatatataattttcacagaatcaagca
ggtcaggatcccagtatcaacagcagatgtgttcataaaatcctatttta
cttgaagggctactgataactgatagctttgtggggtggggaacagaata
attttctacccaagtatttggcctctgagaggacccatgttccagtagcc
cagagggtgttagctaacctataaacaggtggcactaaaaggattcaatg
gatataaaaaaaaaggaaaaagagaaaaggagaaaaagagagagagagag
agagagagagagagagagagagagagagagagagagaaatggaatcatat
gaataagggaaagaaatatggtaagagaattagggacaactaaaaaggaa
gattcaaagccaatatgttatatacatatataaacattaaataaaatgct
aaaagattcattctcaggtgctttgtttactagctataaaaggcaaaagt
aatctcttttatgcatgattccctctactactgcttagctaacataatta
cccaattttatttcaaatgatatttaggaaaatctttctattggaaatta
gtagagtctcccataatgacacaaatgagttatattttttgcttttccat
atatttgtacctctgatctgatctctttgttctctgtactttccaaaata
taaaagccatggctacagggaaggatatttaatatgaaggtaaaatattt
atctaagtatgcatgcagctatgagctcaattcccagcatgcccaaaaat
cacagagaacatggactgtgcctattttgcttctagttgtgtgtttaata
tctacacacagaaaaccccaggaagtgttcagtgaaggactttggtaaga
gcaaataattgtgtggtggaagcaatttgggttgaatgtatgtcaacata
gtgttgtgtcaacatctattattaatctgcttttacaaccttttacatac
aaactgaagctgataggctaggtgaatataagaaatagactaatcagtta
tgaactcagacggac
gaattcaagggtagagatactgaattgagagggtggatgggggaacaccc
tcatagcagcaggggagaagggatgatatggaggaggggggtgctccagg
tgttaggcaactgggaaatgagataacatttgaaatgtaaataaagaaaa
tatttttaaaaacaaagaaagaaaaaatctcagaagggccttaaaaaacc
accatatttagcactaggggatattactagcaatgtatcagtgacaaata
ttcaaggtctcaaggcacagtactaaagtggtgaaaaaacagatgagaga
catgaacaaataaaaacaaaggactgactttcttgggcgcagttttgtca
gattcaaatgtattaataactactgcttcaaaagtgtaaaggtacggacc
agggcagagtccaacagtgaagtcatgtggcaaaatcattaaggggttat
ttttacttcatagagtcttagaaaatttctttggcaaatgagaataggaa
atatccataaaagtacatattcagtcatttgttttatgaaacagaaaaaa
gaacccaaatgaatgtactttaagattaatattttacagcagtcactttg
ggaagttttggttttgaatataaagaaaaaggcaagatatttcatactac
ccactgagggaacatgtaggactctaatagctcaaaggaaatgtttattt
gattgatgagtgaattctttcttcctctggagagttttgataaatttgaa
gcactacaatttcatagttatataggagagaggaaaattgtttctttgta
ctgtttgaggatctcatctgaagacttcatcaaaacctatattatccttt
gtgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_110653702_110654772
seq2: B6Ng01-073A06.b_47_1111 (reverse)

seq1  GTCCTGTCTGAGGTCAATAAACTGATTAGTCTATTTTCTTATATTTCAAC  50
      |||| ||||||| |||   |||||||||||||| |||||||||||   ||
seq2  GTCC-GTCTGAGTTCA--TAACTGATTAGTCTA-TTTCTTATATT--CAC  44

seq1  CTAGCCTATCAGCTTCAGTTTGTATGTAAAAGGTTGTAAAAGCAGATTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTATCAGCTTCAGTTTGTATGTAAAAGGTTGTAAAAGCAGATTAA  94

seq1  TAATAGATTGTTGACACAACACTATTGTTGACATACATTCAA-CCAAATT  149
      ||||||| |||||||||||||||| ||||||||||||||||| |||||||
seq2  TAATAGA-TGTTGACACAACACTA-TGTTGACATACATTCAACCCAAATT  142

seq1  GCTTCCACCACACAATTATTTGCTCTTACC-AAGTCCTTCACTGAACACT  198
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCTTCCACCACACAATTATTTGCTCTTACCAAAGTCCTTCACTGAACACT  192

seq1  TCCTGGGGTTTTCTGTGTGTAGATATTAAACACACAACTAGAAGCAAAAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGGTTTTCTGTGTGTAGATATTAAACACACAACTAGAAGCAAAAT  242

seq1  AGGCACAGTCCATGTTCTCTGTGATTTTTGGGCATGCTGGGAATTGAGCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAGTCCATGTTCTCTGTGATTTTTGGGCATGCTGGGAATTGAGCT  292

seq1  CATAGCTGCATGCATACTTAGATAAATATTTTACCTTCATATTAAATATC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCTGCATGCATACTTAGATAAATATTTTACCTTCATATTAAATATC  342

seq1  CTTCCCTGTAGCCATGGCTTTTATATTTTGGAAAGTACAGAGAACAAAGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTGTAGCCATGGCTTTTATATTTTGGAAAGTACAGAGAACAAAGA  392

seq1  GATCAGATCAGAGGTACAAATATATGGAAAAGCAAAAAATATAACTCATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGATCAGAGGTACAAATATATGGAAAAGCAAAAAATATAACTCATT  442

seq1  TGTGTCATTATGGGAGACTCTACTAATTTCCAATAGAAAGATTTTCCTAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCATTATGGGAGACTCTACTAATTTCCAATAGAAAGATTTTCCTAA  492

seq1  ATATCATTTGAAATAAAATTGGGTAATTATGTTAGCTAAGCAGTAGTAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATTTGAAATAAAATTGGGTAATTATGTTAGCTAAGCAGTAGTAGA  542

seq1  GGGAATCATGCATAAAAGAGATTACTTTTGCCTTTTATAGCTAGTAAACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATCATGCATAAAAGAGATTACTTTTGCCTTTTATAGCTAGTAAACA  592

seq1  AAGCACCTGAGAATGAATCTTTTAGCATTTTATTTAATGTTTATATATGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCTGAGAATGAATCTTTTAGCATTTTATTTAATGTTTATATATGT  642

seq1  ATATAACATATTGGCTTTGAATCTTCCTTTTTAGTTGTCCCTAATTCTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACATATTGGCTTTGAATCTTCCTTTTTAGTTGTCCCTAATTCTCT  692

seq1  TACCATATTTCTTTCCCTTATTCATATGATTCCATTTCTCTCTCTCTCTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATATTTCTTTCCCTTATTCATATGATTCCATTTCTCTCTCTCTCTC  742

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTCTCCTTTTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTCTCCTTTTC  792

seq1  TCTTTTTCCTTTTTTTTTATATCCATTGAATCCTTTTAGTGCCACCTGTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCCTTTTTTTTTATATCCATTGAATCCTTTTAGTGCCACCTGTT  842

seq1  TATAGGTTAGCTAACACCCTCTGGGCTACTGGAACATGGGTCCTCTCAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGTTAGCTAACACCCTCTGGGCTACTGGAACATGGGTCCTCTCAGA  892

seq1  GGCCAAATACTTGGGTAGAAAATTATTCTGTTCCCCACCCCACAAAGCTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAATACTTGGGTAGAAAATTATTCTGTTCCCCACCCCACAAAGCTA  942

seq1  TCAGTTATCAGTAGCCCTTCAAGTAAAATAGGATTTTATGAACACATCTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTATCAGTAGCCCTTCAAGTAAAATAGGATTTTATGAACACATCTG  992

seq1  CTGTTGATACTGGGATCCTGACCTGCTTGATTCTGTGAAAATTATATATG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGATACTGGGATCCTGACCTGCTTGATTCTGTGAAAATTATATATG  1042

seq1  TAAAATGTGGCCACTATGAATTC  1071
      |||||||||||||||||||||||
seq2  TAAAATGTGGCCACTATGAATTC  1065

seq1: chr6_110552401_110553257
seq2: B6Ng01-073A06.g_69_923

seq1  GAATTCAAGGGTAGAGATACTGAATTGAGAGGGTGGATGGGGGAACACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGGTAGAGATACTGAATTGAGAGGGTGGATGGGGGAACACCC  50

seq1  TCATAGCAGCAGGGGAGAAGGGATGATATGGAGGAGGGGGGTGCTCCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGCAGCAGGGGAGAAGGGATGATATGGAGGAGGGGGGTGCTCCAGG  100

seq1  TGTTAGGCAACTGGGAAATGAGATAACATTTGAAATGTAAATAAAGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGCAACTGGGAAATGAGATAACATTTGAAATGTAAATAAAGAAAA  150

seq1  TATTTTTAAAAACAAAGAAAGAAAAAATCTCAGAAGGGCCTTAAAAAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAAAAACAAAGAAAGAAAAAATCTCAGAAGGGCCTTAAAAAACC  200

seq1  ACCATATTTAGCACTAGGGGATATTACTAGCAATGTATCAGTGACAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATTTAGCACTAGGGGATATTACTAGCAATGTATCAGTGACAAATA  250

seq1  TTCAAGGTCTCAAGGCACAGTACTAAAGTGGTGAAAAAACAGATGAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGTCTCAAGGCACAGTACTAAAGTGGTGAAAAAACAGATGAGAGA  300

seq1  CATGAACAAATAAAAACAAAGGACTGACTTTCTTGGGCGCAGTTTTGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACAAATAAAAACAAAGGACTGACTTTCTTGGGCGCAGTTTTGTCA  350

seq1  GATTCAAATGTATTAATAACTACTGCTTCAAAAGTGTAAAGGTACGGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAAATGTATTAATAACTACTGCTTCAAAAGTGTAAAGGTACGGACC  400

seq1  AGGGCAGAGTCCAACAGTGAAGTCATGTGGCAAAATCATTAAGGGGTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGAGTCCAACAGTGAAGTCATGTGGCAAAATCATTAAGGGGTTAT  450

seq1  TTTTACTTCATAGAGTCTTAGAAAATTTCTTTGGCAAATGAGAATAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTCATAGAGTCTTAGAAAATTTCTTTGGCAAATGAGAATAGGAA  500

seq1  ATATCCATAAAAGTACATATTCAGTCATTTGTTTTATGAAACAGAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCATAAAAGTACATATTCAGTCATTTGTTTTATGAAACAGAAAAAA  550

seq1  GAACCCAAATGAATGTACTTTAAGATTAATATTTTACAGCAGTCAC-TTG  599
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAACCCAAATGAATGTACTTTAAGATTAATATTTTACAGCAGTCACTTTG  600

seq1  GGAAGTTTTGGTTTTGAATATAAAGAAAAAGGCAAGATATTTCATACTAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTTTGGTTTTGAATATAAAGAAAAAGGCAAGATATTTCATACTAC  650

seq1  CCACTGAGGGAACATGTAGGACTCTAATAGCTCAAAGGAAATGTTTATTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCACTGAGGGAACATGTAGGACTCTAATAGCTCAAAGGAAATGTTTATTT  700

seq1  ATTTGATGAGTGAATCCTTTCTTCCTCTGGAGAGTTTTGATAAAATTTGA  749
        ||||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  GATTGATGAGTGAATTCTTTCTTCCTCTGGAGAGTTTTGAT-AAATTTGA  749

seq1  AGCACTACAATTTCAATAGTTATATAGGAGAGAGGAAAATTGTTTTCTTT  799
      |||||||||||||| ||||||||||||||||||||||||||| |||||||
seq2  AGCACTACAATTTC-ATAGTTATATAGGAGAGAGGAAAATTG-TTTCTTT  797

seq1  GTACTGTTTGAGGATCTCAGCTGAAGACTTCATCAAAAACTAGATTAGCC  849
      ||||||||||||||||||| |||||||||||||||||| ||| |||| ||
seq2  GTACTGTTTGAGGATCTCATCTGAAGACTTCATCAAAACCTATATTATCC  847

seq1  TTTGTGAA  857
      ||||||||
seq2  TTTGTGAA  855