BAC Information

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BAC

Clone NameB6Ng01-073N19
Chromosome11 (Build37)6 (Build37)
Map Location 56,734,472 - 56,735,582144,782,331 - 144,782,594
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneNmur2, LOC100040816, LOC624168
Downstream geneGria1, LOC667878, 1810073G14Rik, Mfap3, Galnt10, Sap30l, Hand1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073N19.bB6Ng01-073N19.g
ACCDH890868DH890869
length1,109480
definitionDH890868|Mus musculus domesticus DNA, BAC clone: B6Ng01-073N19, 5' end.DH890869|Mus musculus domesticus DNA, BAC clone: B6Ng01-073N19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(56,734,472 - 56,735,582)(144,782,331 - 144,782,594)
sequence
gaattctctcatttctgccccattgagcagcatttggcttttgcaagaca
atgatccccaagaaaagtcaaatggcctttcagtatctcttgaaggctga
ttatcatgggcaatcagaagtcatgtgagagccaactgaaaggcttggcc
atctctgaatggttgctatgtactggactactcatctgaggtccacctag
cctgctttcccaccagaggaagctgtggctaccaccagcatactggccat
gtacgtatatttaactgcatcaggacttcttcctgccaccatcatgaaca
ctgaacgatgagagctctagataccctcacttacaagcacccagcaccac
cctttctgttctactaatcaatcacacctgagcacctgaagcctgaaaca
gttctgcatgtttgcaaagccagaatcaaaatgggattgctgctgtgtta
caccgccactgccagcaaagtatgtatctctgtctctgtgcactattcca
gtacaggcctccttccccaagctatcgagaacttaatttctcacaagctt
cctctgacttcataaaataccatctcttcattagagggataaaatgacct
ctgaactcagatttcaaagacccaagtcagtattcagtctctgcccctca
ctatccaaatgatgtccagtaagaaccttctctcagagtccagtcttcac
tccaaacactagaaataccactggctcatgaagttgaagatattcagtaa
tgacatcaggcatggttggctccagggtttttgataatgtcagaattctg
ccaattcctggagtgtgacttcacagtacccctggtaggctcttactaag
cagaacttagccagccactagtgacaagagaaataaaatatctcatttca
aattccagcatcatgtaggccgtgtcaaaaccctcaaattgggaccagat
ctttacattggagctgggggatctgcaaccctataggttggaacacaata
tgactaaccagtaccgccctggcccccccccgccgccaccccccccccag
agctgcaatatgtatcataaagatgccctgtcctgccttcatggaaagaa
gagcccatt
tcttttagagactcttccagttcaggaaatggactctctcctctctgaat
ttttccttcttcggagatatgctgtaggaggatgtctgtcttgttttgct
cttgagcatctgacctccattctgtgggttataacatattgtgggaaagg
attgtctcaggagtgttgtgtgtagtttttgctaacctgctataagctct
gagtggaccacacttccagcccctacctagattctgttggatccacggat
aaaaaaaaaaaataacacacacacacacacacacacacacacacacacac
acacacacacatacactcacaccagttaatcttaaaatgcctttgctaac
tcaatgactgggcactcctaaacctcccctgccaccctagacataattgg
atagagtgaccattggccactccaaccaaaaactcatatggctggttggc
tttatctctttctcctcctcctcctcctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_56734472_56735582
seq2: B6Ng01-073N19.b_47_1155

seq1  GAATTCTCTCATTTCTGCCCCATTGAGCAGCATTTGGCTTTTGCAAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCATTTCTGCCCCATTGAGCAGCATTTGGCTTTTGCAAGACA  50

seq1  ATGATCCCCAAGAAAAGTCAAATGGCCTTTCAGTATCTCTTGAAGGCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCCCCAAGAAAAGTCAAATGGCCTTTCAGTATCTCTTGAAGGCTGA  100

seq1  TTATCATGGGCAATCAGAAGTCATGTGAGAGCCAACTGAAAGGCTTGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATGGGCAATCAGAAGTCATGTGAGAGCCAACTGAAAGGCTTGGCC  150

seq1  ATCTCTGAATGGTTGCTATGTACTGGACTACTCATCTGAGGTCCACCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGAATGGTTGCTATGTACTGGACTACTCATCTGAGGTCCACCTAG  200

seq1  CCTGCTTTCCCACCAGAGGAAGCTGTGGCTACCACCAGCATACTGGCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTTCCCACCAGAGGAAGCTGTGGCTACCACCAGCATACTGGCCAT  250

seq1  GTACGTATATTTAACTGCATCAGGACTTCTTCCTGCCACCATCATGAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGTATATTTAACTGCATCAGGACTTCTTCCTGCCACCATCATGAACA  300

seq1  CTGAACGATGAGAGCTCTAGATACCCTCACTTACAAGCACCCAGCACCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACGATGAGAGCTCTAGATACCCTCACTTACAAGCACCCAGCACCAC  350

seq1  CCTTTCTGTTCTACTAATCAATCACACCTGAGCACCTGAAGCCTGAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTGTTCTACTAATCAATCACACCTGAGCACCTGAAGCCTGAAACA  400

seq1  GTTCTGCATGTTTGCAAAGCCAGAATCAAAATGGGATTGCTGCTGTGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGCATGTTTGCAAAGCCAGAATCAAAATGGGATTGCTGCTGTGTTA  450

seq1  CACCGCCACTGCCAGCAAAGTATGTATCTCTGTCTCTGTGCACTATTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGCCACTGCCAGCAAAGTATGTATCTCTGTCTCTGTGCACTATTCCA  500

seq1  GTACAGGCCTCCTTCCCCAAGCTATCGAGAACTTAATTTCTCACAAGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGGCCTCCTTCCCCAAGCTATCGAGAACTTAATTTCTCACAAGCTT  550

seq1  CCTCTGACTTCATAAAATACCATCTCTTCATTAGAGGGATAAAATGACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGACTTCATAAAATACCATCTCTTCATTAGAGGGATAAAATGACCT  600

seq1  CTGAACTCAGATTTCAAAGACCCAAGTCAGTATTCAGTCTCTGCCCCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTCAGATTTCAAAGACCCAAGTCAGTATTCAGTCTCTGCCCCTCA  650

seq1  CTATCCAAATGATGTCCAGTAAGAACCTTCTCTCAGAGTCCAGTCTTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCAAATGATGTCCAGTAAGAACCTTCTCTCAGAGTCCAGTCTTCAC  700

seq1  TCCAAACACTAGAAATACCACTGGCTCATGAAGTTGAAGATATTCAGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACACTAGAAATACCACTGGCTCATGAAGTTGAAGATATTCAGTAA  750

seq1  TGACATCAGGCATGGTTGGCTCCAGGGTTTTTGATAATGTCAGAATTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCAGGCATGGTTGGCTCCAGGGTTTTTGATAATGTCAGAATTCTG  800

seq1  CCAATTCCTGGAGTGTGACTTCACAGTACCCCTGGTAGGCTCTTACTAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCCTGGAGTGTGACTTCACAGTACCCCTGGTAGGCTCTTACTAAG  850

seq1  CAGAACTTAGCCAGCCACTAGTGACAAGAGAAATAAAATATCTCATTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAGAACTTAGCCAGCCACTAGTGACAAGAGAAATAAAATATCTCATTTC-  899

seq1  AAATTCCAGCATCATGTAGGCCGTGTCAAAACCCTCAAAATTGGGACCAG  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAATTCCAGCATCATGTAGGCCGTGTCAAAACCCTC-AAATTGGGACCAG  948

seq1  ATCTTTACATTGGAGCTGGGGGGATCTGCAACCCTATAGG-TGGAACAAC  999
      ||||||||||||||||| |||||||||||||||||||||| |||||| ||
seq2  ATCTTTACATTGGAGCT-GGGGGATCTGCAACCCTATAGGTTGGAAC-AC  996

seq1  AATATGAACTAACCAGTACCGCCCT-GCCCCCCCCCGCCGCCACCCCCCC  1048
      |||||| |||||||||||||||||| ||||||||||||||||||||||||
seq2  AATATG-ACTAACCAGTACCGCCCTGGCCCCCCCCCGCCGCCACCCCCCC  1045

seq1  CCCAGAGCTGC-ATATGTATCA-AAAGATGCCCTGGTCGGCCATCAGTGG  1096
      ||||||||||| |||||||||| ||||||||||||  | ||| ||| |||
seq2  CCCAGAGCTGCAATATGTATCATAAAGATGCCCTGTCCTGCCTTCA-TGG  1094

seq1  AAAGAGAGGCCCATT  1111
      |||||   |||||||
seq2  AAAGAAGAGCCCATT  1109

seq1: chr6_144782331_144782594
seq2: B6Ng01-073N19.g_340_553 (reverse)

seq1  GGAGGAGGAGGAGGAGGAGAA----ATGATGCTATTCTAGGTTAATTAGC  46
      |||||||||||||||||||||    || | || |  | ||    || || 
seq2  GGAGGAGGAGGAGGAGGAGAAAGAGATAAAGCCA-ACCAGCCATATGAG-  48

seq1  ACTTTTTTTTTTAAATCATGAA--ATCAC---ATCAAAGTA---ATA---  85
        |||||  ||  | |    ||   ||||   ||| || ||    ||   
seq2  --TTTTTGGTTGGAGTGGCCAATGGTCACTCTATCCAATTATGTCTAGGG  96

seq1  ----AGAATAATTATCACAGTTTACTGACA-----GTACCACAGACACTA  126
          ||   |  | |   |||   | | ||      || || || || | 
seq2  TGGCAGGGGAGGTTTAGGAGTGCCCAGTCATTGAGTTAGCAAAGGCATT-  145

seq1  GTCCAGACTCGTAGACATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  176
       |  |||    |  ||  ||||| |||| |||||||||||||||||||||
seq2  -TTAAGA----TTAACTGGTGTGAGTGTATGTGTGTGTGTGTGTGTGTGT  190

seq1  GTGTGTACCTGGTGTGTGTGTATGTGTGTATACCTGGTGTGTATGTGTCT  226
      ||||||     |||||||||| |||||||                     
seq2  GTGTGT-----GTGTGTGTGTGTGTGTGT---------------------  214

seq1  GTGTACCTGGTGTGTGTATATACCTGGTGTGTGTGTGT  264
                                            
seq2  --------------------------------------  214