BAC Information

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BAC

Clone NameB6Ng01-075H17
Chromosome6 (Build37)
Map Location 85,609,479 - 85,610,028
singlet/doubletsinglet
Overlap geneAlms1
Upstream geneExoc6b, LOC665129, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4
Downstream geneLOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075H17.bB6Ng01-075H17.g
ACCDH892031DH892032
length1,2361,071
definitionDH892031|Mus musculus domesticus DNA, BAC clone: B6Ng01-075H17, 5' end.DH892032|Mus musculus domesticus DNA, BAC clone: B6Ng01-075H17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacttaaatgtgataaaagcagtctacagcaaacca
gtagccaacatcaaagttaatagtgagaagctggaagcaatccctctaaa
atcagggactagacaaggctgcccactatctccctacctattcaatatag
tacttgaagtcctagccagagcaattcaacaacaaaaggagatcaagggg
atacaaattagaaaggaagaagtaaaaatatcactttttgcagatgatat
gatagtatatataagttcccctaaaaattccaccagagaaatcctaaacc
tggttcagtgaagtagctggatataagattaactcaaaaaagtcaatggc
ctttctctacacaaaggataaacaggctgagagagaaattagggaaataa
acaacaaccttctcaatagtcacaaataatacaaaataccttggtgtgac
tctaactaaggaagtgaaagatctgtatgataagtacttcaaatctctaa
agaaagaaattaaagaagatctcagaagatggtcagatcccccaatctca
tggattggcaggatcaatatagtaaaaatgactatcttgccaatagcaat
ctacagattcaatgtaatcctcatcaaaattccaactcaatacttcaaca
aattagaaagggcaatctgcaaattcatctggaataacacaaaaaaacta
ggatatgacaaactcttctcaaggataaaagaacctctggtggaatcacc
atgcctgacctaaagccattctacagagcaattgtgttaaaaactgcatg
gtactggtatatcaacagataaattgaccaatggaatagaattgaaaacc
tagaaatgaacccacatacctatggtcacttgatctttgacaagggagct
aaaaatcatccagtggaaaaaagactacattttcaacaaatggtgctggt
acaactgggaggttatcatgtagaagaatgtgaattgatccattcctatc
tcgttgtactaaggtcaaatcaaagtggatcagaactccaaataaaccag
aagaacactgaaacttatagagagaaagtggggaaaagccctcgaagata
tgggcagaatggaaaattcctgaatagaaacaggcaatgcttgtgctgta
agaatcaagaattggacatgggactcataaatgcaagcttctgtaagcca
agtctagtgaatcattagagacacaaaaggggtgac
gaattctttgttcagttctgagtccccatccctgcatccctggaataaat
cctatttgttcaggatggatgattttttaatgtgttcttggattccgtta
gggagaattttattgagtattgttgcatcgatattcataagggaaattgg
tctgaagttctctttatttgttggttctttctgtggtttaggtatcatag
taattgtggcttcatagaatggattgggtagagtaccttctgtttctatt
ttgtggaatagtttgagaagaactggaactagatcttctttgaaggtctg
atagaactctgctctaaacccatctggtcctgggctttttttggttggga
gactattaaagactgattctaattctttaggggatatgggactgtttaga
tcattaacttgatcttgacttaactttggtacctggtatctgtctagaaa
tttgtccatttcacccaggtgtcccagttttgttgagaatagcctttttt
tagaaggatctgattgtgttttggatttctttaggattttttgttatgtc
tcccttttcatttctgattttgttaattaggatgctttccctgtgccctc
tagtgagtgtggctaagggtttatctatcttgttgattttttcaaagaac
cagctcctcatttggttgattctttgaatagttcttgtttccacttggtt
gattttgctcctgagtttgattatttcctactgtctactcctcttgggtg
aatttgcttccttttgttgtagtgtttttaggtgtgttgtcaagctgcta
gtgtgtgcactctctagtttctatttggaggcactcagagctatgagttt
ccctcttaaaaatgctttcattgtgtcccataagtttgggtatgttgtgg
cttcattttcattaaactctaaaaagtctttatttcttctttattcttct
ttgaccaaggtatcattgtgttcagttccacgtgatgttggctttcaatt
atttttgttgtatgagatcagcctttagttatggtgaattgaaggatgca
tgggacaattccaatattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_85609479_85610028
seq2: B6Ng01-075H17.g_608_1138 (reverse)

seq1  AAAAATATTGAAATTGTCCCATGCATCCTATCAGATCACCATGGACT-AA  49
      |||||||||| |||||||||||||||||| |||  |||||||  ||| ||
seq2  AAAAATATTGGAATTGTCCCATGCATCCT-TCAATTCACCAT-AACTAAA  48

seq1  GGCTGATCTTCAATAACAAAATAAATAATAGAAAGCCAACATTCATGTGG  99
      |||||||||   | |||||   ||||||| ||||||||||| ||| ||||
seq2  GGCTGATCTCATACAACAA---AAATAATTGAAAGCCAACA-TCACGTGG  94

seq1  AAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAA  149
       |||||||||          |||||||||||||||||| ||| |||||||
seq2  -AACTGAACA----------CAATGATACCTTGGTCAAAGAA-GAATAAA  132

seq1  GAAAGAAATTAAGGACTTTTTGGAGTTTAATGAAAATGAAGCCACAACAT  199
      | |||||| ||| |||||||| ||||||||||||||||||||||||||||
seq2  G-AAGAAA-TAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACAT  180

seq1  ACCCAAACTTATGGGACACAATGAAAGCATTCCTAAGAGGAAAACTCATA  249
      |||||||||||||||||||||||||||||||  ||||||| |||||||||
seq2  ACCCAAACTTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATA  230

seq1  GCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACACATTAGCAGCTT  299
      |||||||||||||||||| ||||||||||||| ||||||| |||||||||
seq2  GCTCTGAGTGCCTCCAAATAGAAACTAGAGAGTGCACACACTAGCAGCTT  280

seq1  GACAACACACCTAAAAGCTCTAGATCAAAAGGAAGCAAATTCACCCAAGA  349
      |||||||||||||||| | ||| | |||||||||||||||||||||||||
seq2  GACAACACACCTAAAAACACTACAACAAAAGGAAGCAAATTCACCCAAGA  330

seq1  GGAGTAGACGGCAGGAAATAATCAAACTCAGGGACGAAATCAACCAAGTG  399
      ||||||||| | ||||||||||||||||||||  | ||||||||||||||
seq2  GGAGTAGACAGTAGGAAATAATCAAACTCAGGAGCAAAATCAACCAAGTG  380

seq1  GAAACAAGAACTATTCAAAGAATCAACCAATCGAGGAGCTGGTTCTTTGA  449
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  GAAACAAGAACTATTCAAAGAATCAACCAAATGAGGAGCTGGTTCTTTGA  430

seq1  GAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACA  499
       ||||||||||||||||||||||||||||| | |||||||||||||||||
seq2  AAAAATCAACAAGATAGATAAACCCTTAGCCACACTCACTAGAGGGCACA  480

seq1  GGGAAAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGATATAACA  549
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGGAAAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACA  530

seq1  A  550
      |
seq2  A  531