BAC Information

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BAC

Clone NameB6Ng01-075L20
Chromosome6 (Build37)2 (Build37)
Map Location 9,483,954 - 9,484,599158,439,306 - 158,440,157
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGlcci1, Ica1, LOC100040238, Nxph1
Downstream geneLOC330264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075L20.bB6Ng01-075L20.g
ACCDH892214DH892215
length836867
definitionDH892214|Mus musculus domesticus DNA, BAC clone: B6Ng01-075L20, 5' end.DH892215|Mus musculus domesticus DNA, BAC clone: B6Ng01-075L20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(9,483,954 - 9,484,599)(158,439,306 - 158,440,157)
sequence
gaattcagctgtttaaattctgtacttgggaattgcacccagattttatg
tgttagaaaaatatttttaagccagatagagaggaaaaaataatgctcac
atgaaaggacttgtcagaaatcaaagaatgcaaaaagtttagtccagtcc
agaggttggaggggtaggatggggtggttgtaagtgaagtaaacctagag
ctttgaagctgcttagtagcttacacattgttcctaagcaaatcacttta
gcttctctgtgctccaatttccttagctggaagatcagggataaaatgcc
tcctgagctccattcttcctgtgaaatatagagaggagattatgatacga
aatgtctttttaatactttatgtgccatctaaaagtcatagtataatcac
tactaaggactaccatgaatgatacctgcaaggagcagcacacagtcctt
attatcagttgtctttacctttattaacaatatatcacagagactgtttt
tgtatgataaaaatggataaaataattgggatacttgtgattataaataa
gccattgaaattgaagtttaatttggggttggctccttttcattagtgta
ttatgcgctgaaaaacgtcagaatttcagacgacattgtgataaatattt
tttcacatataaagtatatctcacattttttggaagcttatgaagtacta
tattcatagattgctgactcaaagcaaatgggtcccgaattgagtagctt
aaactgaagacaaacatttgcatttgggtgtagttttcatatatgagatt
acaaacttggactcctgaataattcttgtcgcatat
ctggtttgctgcatgttgccttcgagagagggcaggaagatctgcgacgt
gtagctgaacactatgatgcctatggagatgggaaacttcttgacgtcga
tgtagaacttcaccttctcccacgcccaatcacgcgcgcgagagagactg
taagcgatgaccaggatgttgatgacgaagtgggccagcgtacacagcag
actgaacttggacacggccttgagattcttcaggaaggcgcagggcagca
gcaccgctgtggctatgatggaccatgacttctgcgacacgggcagcccc
gggaaactgttgtacttgaggttgccgctcaccactacgtacaagataca
cgtcatcaccagctcgatgatctgcgccacattgaccacgcggccgccca
gggtggggaatcgaggagcgcagcatgcgttagctatggccacatacaag
tcccgcacgcgcaccacctccccgtcttcgttctcctcgtacaggcacgc
gatgaggatcttgccggtgtatcagcacaccactgcggcgaatatgatga
ggaacaaccccaggtagccgccgtggaggatggcgtagggtaggcccagc
acgaacatgccctgtggtgcaaagaggcaaccagacccaggagctcagct
gatcctctttgaaaagggaccctggggtatagcccaaaactatcgctagg
gggcgctagatgggagacagactttgtgcccaagccacatgacgagagaa
tggggggtgaatccttcgtgaaagaggccctgacgcagaatctgattgtt
tactcaataaagaaagcccggttgcctgggatgaatggaggatgttgatg
caaaaggggaatgtaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_9483954_9484599
seq2: B6Ng01-075L20.b_223_878

seq1  TAAGTGAAGTAAACCTAGAGCTTTGAAGCTGCTTAGTAGCTTACACATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGAAGTAAACCTAGAGCTTTGAAGCTGCTTAGTAGCTTACACATTG  50

seq1  TTCCTAAGCAAATCACTTTAGCTTCTCTGTGCTCCAATTTCCTTAGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAAGCAAATCACTTTAGCTTCTCTGTGCTCCAATTTCCTTAGCTGG  100

seq1  AAGATCAGGGATAAAATGCCTCCTGAGCTCCATTCTTCCTGTGAAATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCAGGGATAAAATGCCTCCTGAGCTCCATTCTTCCTGTGAAATATA  150

seq1  GAGAGGAGATTATGATACGAAATGTCTTTTTAATACTTTATGTGCCATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAGATTATGATACGAAATGTCTTTTTAATACTTTATGTGCCATCT  200

seq1  AAAAGTCATAGTATAATCACTACTAAGGACTACCATGAATGATACCTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCATAGTATAATCACTACTAAGGACTACCATGAATGATACCTGCA  250

seq1  AGGAGCAGCACACAGTCCTTATTATCAGTTGTCTTTACCTTTATTAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCAGCACACAGTCCTTATTATCAGTTGTCTTTACCTTTATTAACAA  300

seq1  TATATCACAGAGACTGTTTTTGTATGATAAAAATGGATAAAATAATTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCACAGAGACTGTTTTTGTATGATAAAAATGGATAAAATAATTGGG  350

seq1  ATACTTGTGATTATAAATAAGCCATTGAAATTGAAGTTTAATTTGGGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGTGATTATAAATAAGCCATTGAAATTGAAGTTTAATTTGGGGTT  400

seq1  GGCTCCTTTTCATTAGTGTATTATGCGCTGAAAAACGTCAGAATTTCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTTTTCATTAGTGTATTATGCGCTGAAAAACGTCAGAATTTCAGA  450

seq1  CGACATTGTGATAAATA-TTTTTCACATAT-AAGTATATCTCACA-TTTT  497
      ||||||||||||||||| |||||||||||| |||||||||||||| ||||
seq2  CGACATTGTGATAAATATTTTTTCACATATAAAGTATATCTCACATTTTT  500

seq1  TGGAAGCTTATGAAGTACTATA-TCATAGATTGCTGACTCAAAGCAAAT-  545
      |||||||||||||||||||||| |||||||||||||||||||||||||| 
seq2  TGGAAGCTTATGAAGTACTATATTCATAGATTGCTGACTCAAAGCAAATG  550

seq1  GGTCCCGAA-TGAGTAGC-TAAACTGAAGACAAACATTTGCA-TTGGGTG  592
      ||||||||| |||||||| ||||||||||||||||||||||| |||||||
seq2  GGTCCCGAATTGAGTAGCTTAAACTGAAGACAAACATTTGCATTTGGGTG  600

seq1  TAGTTTTCATATATGAGATTAC-AACTT-GACTCCTGAATAATTCATGTC  640
      |||||||||||||||||||||| ||||| |||||||||||||||| ||||
seq2  TAGTTTTCATATATGAGATTACAAACTTGGACTCCTGAATAATTCTTGTC  650

seq1  GCATAT  646
      ||||||
seq2  GCATAT  656

seq1: chr2_158439306_158440157
seq2: B6Ng01-075L20.g_82_942 (reverse)

seq1  TCTACATTCCCCTCTTCCCTCAGCCTCCTCCA-TCCTCCCAGGC-ACCGG  48
      ||||||||||||| || | ||| | ||||||| || |||||||| |||||
seq2  TCTACATTCCCCTTTTGCATCAACATCCTCCATTCATCCCAGGCAACCGG  50

seq1  GC-TTCTTT-CTGACTTAACACTCAGATTCTGCGTCAGGGCCTCTTTCAC  96
      || ||||||  ||| | |||| ||||||||||||||||||||||||||||
seq2  GCTTTCTTTATTGAGTAAACAATCAGATTCTGCGTCAGGGCCTCTTTCAC  100

seq1  G-AGGATTCA-CCCCCATTCTCTCGTCCTGTGGCTTAGGCAC-AAGTCTG  143
      | |||||||| |||||||||||||||| |||||||| ||||| |||||||
seq2  GAAGGATTCACCCCCCATTCTCTCGTCATGTGGCTTGGGCACAAAGTCTG  150

seq1  TCT-CCATCTAGCGCCCCCTAGCGATAGTTTTGGGCTATACCCCAGGGTC  192
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCATCTAGCGCCCCCTAGCGATAGTTTTGGGCTATACCCCAGGGTC  200

seq1  CCTTTTC-AAGAGGATCAGCTGAGCTCCTGGGTCTGGTTGCCTCTTTGCA  241
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCAAAGAGGATCAGCTGAGCTCCTGGGTCTGGTTGCCTCTTTGCA  250

seq1  CCACAGGGCATGTTCGTGCTGGGCCTACCCTACGCCATCCTCCACGGCGG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGGCATGTTCGTGCTGGGCCTACCCTACGCCATCCTCCACGGCGG  300

seq1  CTACCTGGGGTTGTTCCTCATCATCTTCGCCGCAGTGGTGTGCTGCTACA  341
      |||||||||||||||||||||||| |||||||||||||||||||| ||||
seq2  CTACCTGGGGTTGTTCCTCATCATATTCGCCGCAGTGGTGTGCTGATACA  350

seq1  CCGGCAAGATCCTCATCGCGTGCCTGTACGAGGAGAACGAAGACGGGGAG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCAAGATCCTCATCGCGTGCCTGTACGAGGAGAACGAAGACGGGGAG  400

seq1  GTGGTGCGCGTGCGGGACTCGTATGTGGCCATAGCTAACGCATGCTGCGC  441
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTGGTGCGCGTGCGGGACTTGTATGTGGCCATAGCTAACGCATGCTGCGC  450

seq1  TCCTCGATTCCCCACCCTGGGCGGCCGCGTGGTCAATGTGGCGCAGATCA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCGATTCCCCACCCTGGGCGGCCGCGTGGTCAATGTGGCGCAGATCA  500

seq1  TCGAGCTGGTGATGACGTGTATCTTGTACGTCGTGGTGAGCGGCAACCTC  541
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCGAGCTGGTGATGACGTGTATCTTGTACGTAGTGGTGAGCGGCAACCTC  550

seq1  ATGTACAACAGTTTCCCGGGGCTGCCCGTGTCGCAGAAGTCCTGGTCCAT  591
      | ||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAGTACAACAGTTTCCCGGGGCTGCCCGTGTCGCAGAAGTCATGGTCCAT  600

seq1  CATAGCCACAGCGGTGCTGCTGCCCTGCGCCTTCCTGAAGAATCTCAAGG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCCACAGCGGTGCTGCTGCCCTGCGCCTTCCTGAAGAATCTCAAGG  650

seq1  CCGTGTCCAAGTTCAGTCTGCTGTGTACGCTGGCCCACTTCGTCATCAAC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTCCAAGTTCAGTCTGCTGTGTACGCTGGCCCACTTCGTCATCAAC  700

seq1  ATCCTGGTCATCGCTTACTGTCTCTCTCGCGCGCGTGATTGGGCCTGGGA  741
      |||||||||||||||||| ||||||||||||||||||||||||| |||||
seq2  ATCCTGGTCATCGCTTACAGTCTCTCTCGCGCGCGTGATTGGGCGTGGGA  750

seq1  GAAGGTGAAGTTCTACATCGACGTCAAGAAGTTTCCCATCTCCATTGGCA  791
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GAAGGTGAAGTTCTACATCGACGTCAAGAAGTTTCCCATCTCCATAGGCA  800

seq1  TCATCGTGTTCAGCTACACGTCGCAGATCTTCCTGCCCTCTCTCGAAGGC  841
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTGTTCAGCTACACGTCGCAGATCTTCCTGCCCTCTCTCGAAGGC  850

seq1  AACATGCAGCA  852
      |||||||||||
seq2  AACATGCAGCA  861