BAC Information

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BAC

Clone NameB6Ng01-075N15
Chromosome6 (Build37)
Map Location 110,053,035 - 110,155,699
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC639110, LOC100043720
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075N15.bB6Ng01-075N15.g
ACCDH892293DH892294
length1,106736
definitionDH892293|Mus musculus domesticus DNA, BAC clone: B6Ng01-075N15, 5' end.DH892294|Mus musculus domesticus DNA, BAC clone: B6Ng01-075N15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,154,570 - 110,155,699)(110,053,035 - 110,053,766)
sequence
gaattcttattgtgtctctgtaacaaaatcctgtttgcatatatggtccc
attcttcctgtacagaaacctgatatggaacaaaaacaaagaaatggtga
tttctccagaatttcagatgaggaagttaggataggcagatgtcttctgc
tttagaagaagacctggaatcctcatgttactcacaagaggagaatgaaa
tgggtgggacaagtttcttcaaaacaaagtagagattccctttggcagag
cgttatgaaagttttatatcgagaacagttacttgtaaatactcaacttt
ccaagaaccatgcttagaagatttgaaagatatttcatagataaaatcgg
cagaaacttctattcttcagtaggtacaataaatcatcaattaacattta
tacctttctacttcagaggggaaaagtatgtcattagtacaaaagagaat
gaccagattttttttttttaatagaaaaagagctttcaactcagcactgt
atatgaaagaattcaataaacaggccttctctaagatatggagaggaatg
atgtataaagtaaacataatcaagcatggagtaggactactctcaagggc
ctatgactttggtgttctttataagagggtataaatttgacattgtaatg
attgactatgtcaatctgaaaggatctagaatcacctagaagacaagcct
ctggtcatgcctgtaagaaattacagagatgatgcagttatagatccagt
tccaaacctacaaataattcattatcctggggaaaggattggaatgagat
catgaggaaaaaagaatgaacataaaaggcaaaggagtatacacaccaat
ttgaccccagatgttacgatttggttctaatgcattgatttaatcaagaa
tttgtgtttccaaatgctgaacgtccttgtcctcagttagttttggattg
atcaataagacagtagtggtcatggctgacagagagacaggcagacatag
tttcatgggatagactggaaaagagacagacactccacgactgtggggag
atgagatataggagctgcagagagaaggcactatctctgtgagaattcgg
ggtggg
gaattccagggccaggaagtggaaatgggtgggtaggagagtgggcggtg
tgggggagggtataggagactttccagatagcatttgaaatgtaaatgaa
gaaacaatctaataaaaattggaaaaaaatgtaactcaagtcaaatttca
taaaagcacaattatatcaatttcaggcttattgaaatggaacagaagca
taaccaaaatatcttatttacacatggtaaattaatttctatcacattaa
attattttaagtaattgattattaatggatgaagtcaaaatttagtttgt
cactgaaatagtgataattgtactttcctttttagaaaaacttcccaaag
gtgtatttgatatattgaatgtaagcagtggttgatcatatttgataata
caatttgaaatattcaaccagaaattaggggctgatacaaatctagtaca
ctaatgttcattgtgttggactcacaaatgatctgttgagaaaaagctgt
ttttcttttgttcagattataaacacgcacaaatacacacacacacacac
acacacacacacacacacacacacacacacaccccacatacatgtcttca
aaaacaaacaaacaaaaaaactggggtgttgaggtagaactattcacaat
tttctgagaaactgccaacttaaatttccagagttgtatatgttttgcat
tcccactctcactggaggaacatcccttcttgctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_110154570_110155699
seq2: B6Ng01-075N15.b_48_1153 (reverse)

seq1  CCCACCCCCGAATTCTCACAGAGATAGTTGGCTTTCTCTCTTGCAGCTCC  50
      |||| |||||||||||||||||||||||  || ||||||| |||||||||
seq2  CCCA-CCCCGAATTCTCACAGAGATAGT--GCCTTCTCTC-TGCAGCTCC  46

seq1  TATATCTCATCCTTTCCCCACAAGTCGTGGAGTTGTTCTGTCTCCTTTTT  100
      |||||||||||   ||||||| |||||||||||   ||||||||   |||
seq2  TATATCTCATC---TCCCCAC-AGTCGTGGAGT--GTCTGTCTC---TTT  87

seq1  CCCAGTTCCTATCCCATGAAAACCTAATGGTCCTGCCCTGTCTCTCTTGT  150
       |||||  |||||||||||||  || |||   ||| |||||||||||   
seq2  TCCAGT--CTATCCCATGAAA--CT-ATG--TCTG-CCTGTCTCTCT--G  127

seq1  TCAGCCATTGACCACTACTGTCTTTATTGATCAATCCAAAACTAACTGAG  200
      ||||||| |||||||||||||| |||||||||||||||||||||||||||
seq2  TCAGCCA-TGACCACTACTGTC-TTATTGATCAATCCAAAACTAACTGAG  175

seq1  GACAAGGACCTTCAGCATTTGGAAACACAAATTCTTGATTAAATCAATGC  250
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGGACGTTCAGCATTTGGAAACACAAATTCTTGATTAAATCAATGC  225

seq1  ATTAGAACCAAATCGTAACATCTGGGGTCAAATTGGTGTGTATACTCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAACCAAATCGTAACATCTGGGGTCAAATTGGTGTGTATACTCCTT  275

seq1  TGCCTTTTATGTTCATTCTTTTTTCCTCATGATCTCATTCCAATCC-TTC  349
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGCCTTTTATGTTCATTCTTTTTTCCTCATGATCTCATTCCAATCCTTTC  325

seq1  CCCAGGATAATGAATTATTTGTAGGTTTGGAACTGGATCTATAACTGCAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGATAATGAATTATTTGTAGGTTTGGAACTGGATCTATAACTGCAT  375

seq1  CATCTCTGTAATTTCTTACAGGCATGACCAGAGGCTTGTCTTCTAGGTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTGTAATTTCTTACAGGCATGACCAGAGGCTTGTCTTCTAGGTGA  425

seq1  TTCTAGATCCTTTCAGATTGACATAGTCAATCATTACAATGTCAAATTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGATCCTTTCAGATTGACATAGTCAATCATTACAATGTCAAATTTA  475

seq1  TACCCTCTTATAAAGAACACCAAAGTCATAGGCCCTTGAGAGTAGTCCTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTCTTATAAAGAACACCAAAGTCATAGGCCCTTGAGAGTAGTCCTA  525

seq1  CTCCATGCTTGATTATGTTTACTTTATACATCATTCCTCTCCATATCTTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGCTTGATTATGTTTACTTTATACATCATTCCTCTCCATATCTTA  575

seq1  GAGAAGGCCTGTTTATTGAATTCTTTCATATACAGTGCTGAGTTGAAAGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGCCTGTTTATTGAATTCTTTCATATACAGTGCTGAGTTGAAAGC  625

seq1  TCTTTTTCTATTAAAAAAAAAAAATCTGGTCATTCTCTTTTGTACTAATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCTATTAAAAAAAAAAAATCTGGTCATTCTCTTTTGTACTAATG  675

seq1  ACATACTTTTCCCCTCTGAAGTAGAAAGGTATAAATGTTAATTGATGATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTTTTCCCCTCTGAAGTAGAAAGGTATAAATGTTAATTGATGATT  725

seq1  TATTGTACCTACTGAAGAATAGAAGTTTCTGCCGATTTTATCTATGAAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTACCTACTGAAGAATAGAAGTTTCTGCCGATTTTATCTATGAAAT  775

seq1  ATCTTTCAAATCTTCTAAGCATGGTTCTTGGAAAGTTGAGTATTTACAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCAAATCTTCTAAGCATGGTTCTTGGAAAGTTGAGTATTTACAAG  825

seq1  TAACTGTTCTCGATATAAAACTTTCATAACGCTCTGCCAAAGGGAATCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTTCTCGATATAAAACTTTCATAACGCTCTGCCAAAGGGAATCTC  875

seq1  TACTTTGTTTTGAAGAAACTTGTCCCACCCATTTCATTCTCCTCTTGTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGTTTTGAAGAAACTTGTCCCACCCATTTCATTCTCCTCTTGTGA  925

seq1  GTAACATGAGGATTCCAGGTCTTCTTCTAAAGCAGAAGACATCTGCCTAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACATGAGGATTCCAGGTCTTCTTCTAAAGCAGAAGACATCTGCCTAT  975

seq1  CCTAACTTCCTCATCTGAAATTCTGGAGAAATCACCATTTCTTTGTTTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTTCCTCATCTGAAATTCTGGAGAAATCACCATTTCTTTGTTTTT  1025

seq1  GTTCCATATCAGGTTTCTGTACAGGAAGAATGGGACCATATATGCAAACA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATATCAGGTTTCTGTACAGGAAGAATGGGACCATATATGCAAACA  1075

seq1  GGATTTTGTTACAGAGACACAATAAGAATTC  1130
      |||||||||||||||||||||||||||||||
seq2  GGATTTTGTTACAGAGACACAATAAGAATTC  1106

seq1: chr6_110053035_110053766
seq2: B6Ng01-075N15.g_70_805

seq1  GAATTCCAGGGCCAGGAAGTGGAAATGGGTGGGTAGGAGAGTGGGCGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGCCAGGAAGTGGAAATGGGTGGGTAGGAGAGTGGGCGGTG  50

seq1  TGGGGGAGGGTATAGGAGACTTTCCAGATAGCATTTGAAATGTAAATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAGGGTATAGGAGACTTTCCAGATAGCATTTGAAATGTAAATGAA  100

seq1  GAAACAATCTAATAAAAATTGGAAAAAAATGTAACTCAAGTCAAATTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAATCTAATAAAAATTGGAAAAAAATGTAACTCAAGTCAAATTTCA  150

seq1  TAAAAGCACAATTATATCAATTTCAGGCTTATTGAAATGGAACAGAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCACAATTATATCAATTTCAGGCTTATTGAAATGGAACAGAAGCA  200

seq1  TAACCAAAATATCTTATTTACACATGGTAAATTAATTTCTATCACATTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAAAATATCTTATTTACACATGGTAAATTAATTTCTATCACATTAA  250

seq1  ATTATTTTAAGTAATTGATTATTAATGGATGAAGTCAAAATTTAGTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTAAGTAATTGATTATTAATGGATGAAGTCAAAATTTAGTTTGT  300

seq1  CACTGAAATAGTGATAATTGTACTTTCCTTTTTAGAAAAACTTCCCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAATAGTGATAATTGTACTTTCCTTTTTAGAAAAACTTCCCAAAG  350

seq1  GTGTATTTGATATATTGAATGTAAGCAGTGGTTGATCATATTTGATAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTTGATATATTGAATGTAAGCAGTGGTTGATCATATTTGATAATA  400

seq1  CAATTTGAAATATTCAACCAGAAATTAGGGGCTGATACAAATCTAGTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTGAAATATTCAACCAGAAATTAGGGGCTGATACAAATCTAGTACA  450

seq1  CTAATGTTCATTGTGTTGGACTCACAAATGATCTGTTGAGAAAAAGCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGTTCATTGTGTTGGACTCACAAATGATCTGTTGAGAAAAAGCTGT  500

seq1  TTTTCTTTTGTTCAGATTATAAACACGCACAAATACACACACACACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTGTTCAGATTATAAACACGCACAAATACACACACACACACAC  550

seq1  ACACACACACACACACACACACACACACACACCCCACATACATGTCTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACCCCACATACATGTCTTCA  600

seq1  AAAACAAACAAACAAAAAAACT-GGGTGTTGAGGTAGAACTATTCACAAT  649
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAAACAAACAAACAAAAAAACTGGGGTGTTGAGGTAGAACTATTCACAAT  650

seq1  TTTCTGAGAAACTGCCAACTT-AATTTCCAGAGTTGTATAAG-TTTGCAT  697
      ||||||||||||||||||||| |||||||||||||||||| | |||||||
seq2  TTTCTGAGAAACTGCCAACTTAAATTTCCAGAGTTGTATATGTTTTGCAT  700

seq1  TCCCACTCTCACTGGAGGAGCATCCC-TCTTGCTGC  732
      ||||||||||||||||||| |||||| |||||||||
seq2  TCCCACTCTCACTGGAGGAACATCCCTTCTTGCTGC  736