BAC Information

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BAC

Clone NameB6Ng01-076J21
Chromosome6 (Build37)
Map Location 17,622,143 - 17,787,554
singlet/doubletdoublet
Overlap geneSt7
Upstream geneTcfec, EG435881, Tes, EG232599, Cav2, Cav1, Met, Capza2
Downstream geneWnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076J21.bB6Ng01-076J21.g
ACCDH892833DH892834
length1,1631,139
definitionDH892833|Mus musculus domesticus DNA, BAC clone: B6Ng01-076J21, 5' end.DH892834|Mus musculus domesticus DNA, BAC clone: B6Ng01-076J21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,786,403 - 17,787,554)(17,622,143 - 17,623,268)
sequence
gaattcaataggccttattattagtttaaagggaatatgaattttaatgc
aaattcatctattttaaggaaatacatgaagtattttcagatctggactt
ttttccccataagataatgcagactataaacagaaagtgattaatagaga
taattgcggtactttcattatttagaaataaaaatcaggcaggcatgatg
gctcttgtcacataaagcaatccagcattgcagaggatgggaaagaagga
tatagtgacttagagatcatccttggctacacagggaaattcaagaaagc
ctagtaagactctcaaacaaacatatatatatatatatatatacacacac
acacacacacacacacacacatatgcatatatatacgcacacatatacac
acacatgtttacatacatacatatgtacatatatatgcatacatacatat
tataatatatatgtatacatacatatatacacacacaacaatcatcacag
aaaatataaagcaatgttaactgcatgagttctgatatttccatacctgc
ttacatatttgtcacactgaattagccaaatattggcagtaaagatgtta
agtaagtctattcataccttccatttttctaaaagtaactattaaaacat
tgttgtaaaatcatatcatacatgctatatctgtcatgcagtaaattaac
agaaagaggacagagtagtaaatactactgtaattgagtcagtaataata
atcaagtgtaatcttagccaggtaaaaatggagaattcctatggctgtca
gtttctaatgtgtttttatctttttgttctattttctttggtctgatttt
gagacatggtctcatagtgcctagcctagtagtcttgattacatggactc
atctgatactttggtctttgcctcccaagtatctggggctaaaaatgtat
acttagatgagtatattgcttaaaaggacttagattcttccttggcaaat
gataacatcaaaattcattataataagtcatacatctactcagaaaagtg
gtatgaatctaacagggttggcttactatgagctggtagtcctggagttt
taatcattccttgaagcaccctcaaggtgaagggggagttctgcacacag
gagatttctcctc
gaattcactgagtattctttatagggaaatctatccaagtagcatgctgc
attagcattttaggcaggaaaagcatggtctttcctggaggccacgtgta
gacagtaaaacttagtgccagtcctgattctcaaggcagcctctccaggc
aacgtggtgaggcaatagaatagtcaaagggaagaagtttaattagactc
atattttttccatataccaagttaagatggtgtcaagattttaaattatc
gtttgttccatatcagttaaagtgggttcattttaggtaaagctcagaat
ccatataataaaaaaatatattttggtttcataaaaatcaaagtttcttc
catggcttaacaaagtcagaatataaattaaccacagaagaaagtatttg
caacttcatagcaatgctaaataccaaataccaaacaagaccccgtgaca
taagatcgaagtttctctgacacctgaatctcttacctggagaatcttac
aagtctttggctatttggacttcaccaagaaataaacacttcttgcttaa
gctactgctatttagggctggtctatttttagatgacttctgcctttcat
tctgtgaagaactttgtaccagaagtagggtctggtagacaagaaagctt
ggcatgggctaaaagctgtgtctcttagcaattgggtacaatacagtttg
ctcggcatcacttgtgcccctaggtaaatgcctgtgacaactttttaatc
cccatgcagaaagaaagtcatctctagacctctagacattctcaactcta
gaatattaacaacaacaaaaacaaaaaacaaaacctaagctgagtttaat
ctgtgaaatcaatattttaggattgtgtataccaaccaattactgactaa
acgtgtccccaatctactgaacttggctgttaggacttctctcacttgta
acttacggctttcatatccaaagtgataaccatccataaccaataaattc
ttgacagggaatagcgttggctcaggacccaagcctctttggtttcaagt
tttctttttgccatggtaacccacagtgtagccacatgggcacaagtcta
tttaccatttcactttgatactcaggtggtgtgtggtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_17786403_17787554
seq2: B6Ng01-076J21.b_46_1208 (reverse)

seq1  GAGGAGAACT---CTGTGTGCAGAACTCCCCTTCCACCTTGAGTGGGC-T  46
      |||||||| |   |||||||||||||||||| | ||||||||| | || |
seq2  GAGGAGAAATCTCCTGTGTGCAGAACTCCCCCTTCACCTTGAGGGTGCTT  50

seq1  CTAGGGATGGATCAAACTC--AGACTACCAGGCTCAT-GTAAG-CAACCC  92
      | ||| |||  | ||||||   |||||||| |||||| ||||| ||||||
seq2  CAAGGAATGATTAAAACTCCAGGACTACCA-GCTCATAGTAAGCCAACCC  99

seq1  TGTTAGA-TCATA-CACTTTTCTGAGTAGATGTATGACTTATTAT-ATGA  139
      ||||||| ||||| ||||||||||||||||||||||||||||||| ||||
seq2  TGTTAGATTCATACCACTTTTCTGAGTAGATGTATGACTTATTATAATGA  149

seq1  ATTTTGATGTTATCATTTG-CAAGGAAGAATCTAAGTCCTTTTAAGCAAT  188
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATTTTGATGTTATCATTTGCCAAGGAAGAATCTAAGTCCTTTTAAGCAAT  199

seq1  ATACTCATCTAAGTATACATTTTTAGCCCCAGATACTTGGGAGGCAAAGA  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCATCTAAGTATACATTTTTAGCCCCAGATACTTGGGAGGCAAAGA  249

seq1  CCAAAGTATCAGATGAGTCCATGTAATCAAGACTACTAGGCTAGGCACTA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTATCAGATGAGTCCATGTAATCAAGACTACTAGGCTAGGCACTA  299

seq1  TGAGACCATGTCTCAAAATCAGACCAAAGAAAATAGAACAAAAAGATAAA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCATGTCTCAAAATCAGACCAAAGAAAATAGAACAAAAAGATAAA  349

seq1  AACACATTAGAAACTGACAGCCATAGGAATTCTCCATTTTTACCTGGCTA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATTAGAAACTGACAGCCATAGGAATTCTCCATTTTTACCTGGCTA  399

seq1  AGATTACACTTGATTATTATTACTGACTCAATTACAGTAGTATTTACTAC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTACACTTGATTATTATTACTGACTCAATTACAGTAGTATTTACTAC  449

seq1  TCTGTCCTCTTTCTGTTAATTTACTGCATGACAGATATAGCATGTATGAT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCTCTTTCTGTTAATTTACTGCATGACAGATATAGCATGTATGAT  499

seq1  ATGATTTTACAACAATGTTTTAATAGTTACTTTTAGAAAAATGGAAGGTA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTTACAACAATGTTTTAATAGTTACTTTTAGAAAAATGGAAGGTA  549

seq1  TGAATAGACTTACTTAACATCTTTACTGCCAATATTTGGCTAATTCAGTG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGACTTACTTAACATCTTTACTGCCAATATTTGGCTAATTCAGTG  599

seq1  TGACAAATATGTAAGCAGGTATGGAAATATCAGAACTCATGCAGTTAACA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAATATGTAAGCAGGTATGGAAATATCAGAACTCATGCAGTTAACA  649

seq1  TTGCTTTATATTTTCTGTGATGATTGTTGTGTGTGTATATATGTATGTAT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTATATTTTCTGTGATGATTGTTGTGTGTGTATATATGTATGTAT  699

seq1  ACATATATATTATAATATGTATGTATGCATATATATGTACATATGTATGT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATATTATAATATGTATGTATGCATATATATGTACATATGTATGT  749

seq1  ATGTAAACATGTGTGTGTATATGTGTGCGTATATATATGCATATGTGTGT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAACATGTGTGTGTATATGTGTGCGTATATATATGCATATGTGTGT  799

seq1  GTGTGTGTGTGTGTGTGTGTGTATATATATATATATATATATGTTTGTTT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTATATATATATATATATATATGTTTGTTT  849

seq1  GAGAGTCTTACTAGGCTTTCTTGAATTTCCCTGTGTAGCCAAGGATGATC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTCTTACTAGGCTTTCTTGAATTTCCCTGTGTAGCCAAGGATGATC  899

seq1  TCTAAGTCACTATATCCTTCTTTCCCATCCTCTGCAATGCTGGATTGCTT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTCACTATATCCTTCTTTCCCATCCTCTGCAATGCTGGATTGCTT  949

seq1  TATGTGACAAGAGCCATCATGCCTGCCTGATTTTTATTTCTAAATAATGA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGACAAGAGCCATCATGCCTGCCTGATTTTTATTTCTAAATAATGA  999

seq1  AAGTACCGCAATTATCTCTATTAATCACTTTCTGTTTATAGTCTGCATTA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACCGCAATTATCTCTATTAATCACTTTCTGTTTATAGTCTGCATTA  1049

seq1  TCTTATGGGGAAAAAAGTCCAGATCTGAAAATACTTCATGTATTTCCTTA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGGGGAAAAAAGTCCAGATCTGAAAATACTTCATGTATTTCCTTA  1099

seq1  AAATAGATGAATTTGCATTAAAATTCATATTCCCTTTAAACTAATAATAA  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGATGAATTTGCATTAAAATTCATATTCCCTTTAAACTAATAATAA  1149

seq1  GGCCTATTGAATTC  1152
      ||||||||||||||
seq2  GGCCTATTGAATTC  1163

seq1: chr6_17622143_17623268
seq2: B6Ng01-076J21.g_69_1207

seq1  GAATTCACTGAGTATTCTTTATAGGGAAATCTATCCAAGTAGCATGCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGAGTATTCTTTATAGGGAAATCTATCCAAGTAGCATGCTGC  50

seq1  ATTAGCATTTTAGGCAGGAAAAGCATGGTCTTTCCTGGAGGCCACGTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCATTTTAGGCAGGAAAAGCATGGTCTTTCCTGGAGGCCACGTGTA  100

seq1  GACAGTAAAACTTAGTGCCAGTCCTGATTCTCAAGGCAGCCTCTCCAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTAAAACTTAGTGCCAGTCCTGATTCTCAAGGCAGCCTCTCCAGGC  150

seq1  AACGTGGTGAGGCAATAGAATAGTCAAAGGGAAGAAGTTTAATTAGACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGGTGAGGCAATAGAATAGTCAAAGGGAAGAAGTTTAATTAGACTC  200

seq1  ATATTTTTTCCATATACCAAGTTAAGATGGTGTCAAGATTTTAAATTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTTCCATATACCAAGTTAAGATGGTGTCAAGATTTTAAATTATC  250

seq1  GTTTGTTCCATATCAGTTAAAGTGGGTTCATTTTAGGTAAAGCTCAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTCCATATCAGTTAAAGTGGGTTCATTTTAGGTAAAGCTCAGAAT  300

seq1  CCATATAATAAAAAAATATATTTTGGTTTCATAAAAATCAAAGTTTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATAATAAAAAAATATATTTTGGTTTCATAAAAATCAAAGTTTCTTC  350

seq1  CATGGCTTAACAAAGTCAGAATATAAATTAACCACAGAAGAAAGTATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTTAACAAAGTCAGAATATAAATTAACCACAGAAGAAAGTATTTG  400

seq1  CAACTTCATAGCAATGCTAAATACCAAATACCAAACAAGACCCCGTGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCATAGCAATGCTAAATACCAAATACCAAACAAGACCCCGTGACA  450

seq1  TAAGATCGAAGTTTCTCTGACACCTGAATCTCTTACCTGGAGAATCTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATCGAAGTTTCTCTGACACCTGAATCTCTTACCTGGAGAATCTTAC  500

seq1  AAGTCTTTGGCTATTTGGACTTCACCAAGAAATAAACACTTCTTGCTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTTGGCTATTTGGACTTCACCAAGAAATAAACACTTCTTGCTTAA  550

seq1  GCTACTGCTATTTAGGGCTGGTCTATTTTTAGATGACTTCTGCCTTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTGCTATTTAGGGCTGGTCTATTTTTAGATGACTTCTGCCTTTCAT  600

seq1  TCTGTGAAGAACTTTGTACCAGAAGTAGGGTCTGGTAGACAAGAAAGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAAGAACTTTGTACCAGAAGTAGGGTCTGGTAGACAAGAAAGCTT  650

seq1  GGCATGGGCTAAAAGCTGTGTCTCTTAGCAATTGGGTACAATACAGTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGGGCTAAAAGCTGTGTCTCTTAGCAATTGGGTACAATACAGTTTG  700

seq1  CTCGGCATCACTTGTGCCCCTAGGTAAATGCCTGTGACAAC-TTTTAATC  749
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTCGGCATCACTTGTGCCCCTAGGTAAATGCCTGTGACAACTTTTTAATC  750

seq1  CCCATGCAGAAAGAAAGTCATCTCTAGACCTCTAGACATTCTCAACTCTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGCAGAAAGAAAGTCATCTCTAGACCTCTAGACATTCTCAACTCTA  800

seq1  GAATATTAACAACAACAAAAACAAAAAACAAAACCTAAGCTGAGTTTAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTAACAACAACAAAAACAAAAAACAAAACCTAAGCTGAGTTTAAT  850

seq1  CTGTGAAATCAAATATTTTAAGGATTGTGTATACCAACCAATTACTGACT  899
      |||||||||| |||||||| ||||||||||||||||||||||||||||| 
seq2  CTGTGAAATC-AATATTTT-AGGATTGTGTATACCAACCAATTACTGAC-  897

seq1  TAAACGTGTCCCCAAATCTACTGAACTTGGCTGTTAGGACTTCTCTCACT  949
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAAACGTGTCCCC-AATCTACTGAACTTGGCTGTTAGGACTTCTCTCACT  946

seq1  TGTAACTTACGGCTTTCATATCCAAAGTGATAACCATCCATAACACAT-A  998
      ||||||||||||||||||||||||||||||||||||||||||||  || |
seq2  TGTAACTTACGGCTTTCATATCCAAAGTGATAACCATCCATAACCAATAA  996

seq1  ATTC-TGACAGGAATAAGCGTTGGCTCA-GACCCAAGCCTCTT--GTTTC  1044
      |||| ||||||| |  |||||||||||| ||||||||||||||  |||||
seq2  ATTCTTGACAGGGAATAGCGTTGGCTCAGGACCCAAGCCTCTTTGGTTTC  1046

seq1  -AGTTTTC-TGTTGCCAT-GTAA-CCACAGTGTTAGCAACAT-GGCACAA  1089
       ||||||| | ||||||| |||| |||||||| |||| |||| |||||||
seq2  AAGTTTTCTTTTTGCCATGGTAACCCACAGTG-TAGCCACATGGGCACAA  1095

seq1  GTCTA-TTAACATTTC-CATTGATCC-----AGGTGTGTGGTGT  1126
      ||||| ||| |||||| | ||||| |      ||||||||||||
seq2  GTCTATTTACCATTTCACTTTGATACTCAGGTGGTGTGTGGTGT  1139