BAC Information

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BAC

Clone NameB6Ng01-076P17
Chromosome6 (Build37)
Map Location 113,591,730 - 113,753,325
singlet/doubletdoublet
Overlap geneIrak2, Tatdn2, Ghrl, Sec13, Atp2b2
Upstream geneRad18, Srgap3, EG666387, EG620161, LOC666397, Thumpd3, EG434078, Setd5, Lhfpl4, Mtmr14, Cpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2, 4931417G12Rik, 6720456B07Rik, Vhlh
Downstream geneSlc6a11, LOC666491, Slc6a1, Hrh1, Atg7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076P17.bB6Ng01-076P17.g
ACCDH893080DH893081
length1,181931
definitionDH893080|Mus musculus domesticus DNA, BAC clone: B6Ng01-076P17, 5' end.DH893081|Mus musculus domesticus DNA, BAC clone: B6Ng01-076P17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,752,141 - 113,753,325)(113,591,730 - 113,592,654)
sequence
gaattccataaaggtgaacttggtggtgtcacaccattgttaatttctaa
gttgagatctccttgatataaaaggagacatgagatacccctttccagtg
agacatcacacatgggggtttctacagtgatcttcagcgagccggtcagg
gaaggaggtgggcaatggcctgagcttaaatcaccatccactgacagcag
ttcttcagggacacaactgtggtggtcacagggaatgccctctagaactg
tccaggccatataccactcactgagcattttgaattgacgagtccctgga
ctggccttcctgatcccgtggggtccacacctgaccagccaagccaacac
agtccagatgtcaccacagaagtaccatcccaaccagttgtgtggagtgt
gcctttaatcccagcacttgggaggcagacaggtgggtctctgtgagttc
aaggccaacctggtctacagagccagctctaggccagccagggctacaca
gggagaccctgtctcaaaataaataactactaaagtgccatcccacctga
gcatctgaccacactccatgctgccctgagtctcagtccccaccctcccc
tatgacatccacaggaacatttcacccccatccccaatttgagttcctca
cttaacagcagagtggtttgttttggtttggtttgtttttaagaataaga
catgtgattgtccccagtaggctcatgtctctgtggtcgccttctccatt
gtgacattgcattttccatccttcccacccccacagcggccgacggcgca
gcgcctgcaaacgctgcaggtagcgcaaatgccagcctagtcaatggtac
gtctccacggcgagctcttgggctgggttgctgggtgtctttcttctcta
ccccctacttgagcttttcctatcctgggttccacagacctctgacatgc
atgggccttccagaacactcctccctcccaaatgggacaggtacttaaaa
gccgaaccacaacccaggaagtcaactcacatgaccttgcttcttggccc
tatgagaagcagtatgccacccaagtgtgccccccccccccttagcatag
tctgcctcttggtttagaaccattaacttggtctgaactaaccgagccag
catctggttctagaaaaggtctcaagcctcc
gaattccactccggcctgggctacttttgagggtctgtctcaaaaagcca
aaaaccaagtaagcagcaagcaatcaaatgataaacaaacaaacccatta
tcaaccatcacataatccacacatttaaggagcacctctgtgagtgctca
cacacactcacgtgcacaccatacatcccgccgcccctgccccctccgct
ctaggtgttttctgttgtagcattttatgtgagtgggaccatcctgcgtg
cactgtcctttgcgaatggcttcagcatttagcaagtcttaaagggtcat
ccacgttgtagtcaatgtgagttctgtatccccttccttccttccgtccc
ctccctcatgtctctcttccaccccttcagtttctctcatttactctcct
ccctccttttccagtgatgaaaacagaacccagggtctctcacatgcagg
gctgtgctccttgttctagtatctctgcctctctgtctctgtctgtctct
ctgtctctgtctctctgtctctctctaacttttgggttttcgagacaggg
tttctctgtgtagttctggctgtcctggaactccctctatagaccaggct
ggtctcgaactcaaaggtccacctgcctctgcctcctatgggctgggatt
aaaggcatgcaccatcactgcctagcttttccagtttctttctttttttt
tttttcttttttttttttttttggttttttgagacagggttttctctgta
tagccctggctgtcctggaactcacttttgtagaccgggctggcctctaa
ctcaaaaaatccgcctgcctctgccctccccgagtggctgggatttaagg
cgtgcgccaccacctcccgggcaattttttttttattttcaataatactc
cgtgtttggatgttcaatttttgcttttcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_113752141_113753325
seq2: B6Ng01-076P17.b_47_1227 (reverse)

seq1  GGAGGCTTGGAGCTTTTTTCTATGAACCCAGATGCTGGCTTCTGGTTAGT  50
      |||||||| |||   ||||||| ||| |||||||||||||   |||||||
seq2  GGAGGCTT-GAGACCTTTTCTA-GAA-CCAGATGCTGGCT--CGGTTAGT  45

seq1  TCCTGACCCAAGGTAAT-GTTCTAAAACCAGAGCTAGAACTATGCTTA-A  98
      | | || ||||| |||| |||||||| | ||||  || |||||||| |  
seq2  T-CAGA-CCAAGTTAATGGTTCTAAACCAAGAGGCAG-ACTATGCTAAGG  92

seq1  GGGGGGGGGGCACAC-TGGGTGGCATACTGCTTCTCATGGGGCC-AGAAG  146
      ||||||||||||||| |||||||||||||||||||||| ||||| |||||
seq2  GGGGGGGGGGCACACTTGGGTGGCATACTGCTTCTCATAGGGCCAAGAAG  142

seq1  CCAAGGTCATGTGGAGTTGACTTCCTGGGTTGTGGTTCGGCTTTTAAGTA  196
       ||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  -CAAGGTCATGT-GAGTTGACTTCCTGGGTTGTGGTTCGGCTTTTAAGTA  190

seq1  CCTGTCCCATTTGGGAGGGA-GAGTGTTCTGGAAGG-CCATGCATGTCAG  244
      |||||||||||||||||||| ||||||||||||||| |||||||||||||
seq2  CCTGTCCCATTTGGGAGGGAGGAGTGTTCTGGAAGGCCCATGCATGTCAG  240

seq1  AGGTCTGTGGGACCCAGGATAGGGAAAGCCTCAAGTAGGGGGTAGAGAAG  294
      |||||||||| |||||||||||| |||| |||||||||||||||||||||
seq2  AGGTCTGTGGAACCCAGGATAGGAAAAG-CTCAAGTAGGGGGTAGAGAAG  289

seq1  -AAGACACCCAGCAACCCAGCCCAAGAGCTCGCCGTGGAGACGTACCATT  343
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACACCCAGCAACCCAGCCCAAGAGCTCGCCGTGGAGACGTACCATT  339

seq1  GACTAGGCTGGCATTTGCGCTACCTGCAGCGTTTGCAGGCGCTGCGCCGT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGGCTGGCATTTGCGCTACCTGCAGCGTTTGCAGGCGCTGCGCCGT  389

seq1  CGGCCGCTGTGGGGGTGGGAAGGATGGAAAATGCAATGTCACAATGGAGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCGCTGTGGGGGTGGGAAGGATGGAAAATGCAATGTCACAATGGAGA  439

seq1  AGGCGACCACAGAGACATGAGCCTACTGGGGACAATCACATGTCTTATTC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGACCACAGAGACATGAGCCTACTGGGGACAATCACATGTCTTATTC  489

seq1  TTAAAAACAAACCAAACCAAAACAAACCACTCTGCTGTTAAGTGAGGAAC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAACAAACCAAACCAAAACAAACCACTCTGCTGTTAAGTGAGGAAC  539

seq1  TCAAATTGGGGATGGGGGTGAAATGTTCCTGTGGATGTCATAGGGGAGGG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTGGGGATGGGGGTGAAATGTTCCTGTGGATGTCATAGGGGAGGG  589

seq1  TGGGGACTGAGACTCAGGGCAGCATGGAGTGTGGTCAGATGCTCAGGTGG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACTGAGACTCAGGGCAGCATGGAGTGTGGTCAGATGCTCAGGTGG  639

seq1  GATGGCACTTTAGTAGTTATTTATTTTGAGACAGGGTCTCCCTGTGTAGC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCACTTTAGTAGTTATTTATTTTGAGACAGGGTCTCCCTGTGTAGC  689

seq1  CCTGGCTGGCCTAGAGCTGGCTCTGTAGACCAGGTTGGCCTTGAACTCAC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTGGCCTAGAGCTGGCTCTGTAGACCAGGTTGGCCTTGAACTCAC  739

seq1  AGAGACCCACCTGTCTGCCTCCCAAGTGCTGGGATTAAAGGCACACTCCA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCCACCTGTCTGCCTCCCAAGTGCTGGGATTAAAGGCACACTCCA  789

seq1  CACAACTGGTTGGGATGGTACTTCTGTGGTGACATCTGGACTGTGTTGGC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTGGTTGGGATGGTACTTCTGTGGTGACATCTGGACTGTGTTGGC  839

seq1  TTGGCTGGTCAGGTGTGGACCCCACGGGATCAGGAAGGCCAGTCCAGGGA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGGTCAGGTGTGGACCCCACGGGATCAGGAAGGCCAGTCCAGGGA  889

seq1  CTCGTCAATTCAAAATGCTCAGTGAGTGGTATATGGCCTGGACAGTTCTA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTCAATTCAAAATGCTCAGTGAGTGGTATATGGCCTGGACAGTTCTA  939

seq1  GAGGGCATTCCCTGTGACCACCACAGTTGTGTCCCTGAAGAACTGCTGTC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCATTCCCTGTGACCACCACAGTTGTGTCCCTGAAGAACTGCTGTC  989

seq1  AGTGGATGGTGATTTAAGCTCAGGCCATTGCCCACCTCCTTCCCTGACCG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATGGTGATTTAAGCTCAGGCCATTGCCCACCTCCTTCCCTGACCG  1039

seq1  GCTCGCTGAAGATCACTGTAGAAACCCCCATGTGTGATGTCTCACTGGAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGCTGAAGATCACTGTAGAAACCCCCATGTGTGATGTCTCACTGGAA  1089

seq1  AGGGGTATCTCATGTCTCCTTTTATATCAAGGAGATCTCAACTTAGAAAT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTATCTCATGTCTCCTTTTATATCAAGGAGATCTCAACTTAGAAAT  1139

seq1  TAACAATGGTGTGACACCACCAAGTTCACCTTTATGGAATTC  1185
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATGGTGTGACACCACCAAGTTCACCTTTATGGAATTC  1181

seq1: chr6_113591730_113592654
seq2: B6Ng01-076P17.g_70_1000

seq1  GAATTCCACTCCGGCCTGGGCTACTTTTGAGGGTCTGTCTCAAAAAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTCCGGCCTGGGCTACTTTTGAGGGTCTGTCTCAAAAAGCCA  50

seq1  AAAACCAAGTAAGCAGCAAGCAATCAAATGATAAACAAACAAACCCATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAGTAAGCAGCAAGCAATCAAATGATAAACAAACAAACCCATTA  100

seq1  TCAACCATCACATAATCCACACATTTAAGGAGCACCTCTGTGAGTGCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCATCACATAATCCACACATTTAAGGAGCACCTCTGTGAGTGCTCA  150

seq1  CACACACTCACGTGCACACCATACATCCCGCCGCCCCTGCCCCCTCCGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACTCACGTGCACACCATACATCCCGCCGCCCCTGCCCCCTCCGCT  200

seq1  CTAGGTGTTTTCTGTTGTAGCATTTTATGTGAGTGGGACCATCCTGCGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTGTTTTCTGTTGTAGCATTTTATGTGAGTGGGACCATCCTGCGTG  250

seq1  CACTGTCCTTTGCGAATGGCTTCAGCATTTAGCAAGTCTTAAAGGGTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCCTTTGCGAATGGCTTCAGCATTTAGCAAGTCTTAAAGGGTCAT  300

seq1  CCACGTTGTAGTCAATGTGAGTTCTGTATCCCCTTCCTTCCTTCCGTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTTGTAGTCAATGTGAGTTCTGTATCCCCTTCCTTCCTTCCGTCCC  350

seq1  CTCCCTCATGTCTCTCTTCCACCCCTTCAGTTTCTCTCATTTACTCTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCATGTCTCTCTTCCACCCCTTCAGTTTCTCTCATTTACTCTCCT  400

seq1  CCCTCCTTTTCCAGTGATGAAAACAGAACCCAGGGTCTCTCACATGCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTTTTCCAGTGATGAAAACAGAACCCAGGGTCTCTCACATGCAGG  450

seq1  GCTGTGCTCCTTGTTCTAGTATCTCTGCCTCTCTGTCTCTGTCTGTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCTCCTTGTTCTAGTATCTCTGCCTCTCTGTCTCTGTCTGTCTCT  500

seq1  CTGTCTCTGTCTCTCTGTCTCTCTCTAACTTTTGGGTTTTCGAGACAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTGTCTCTCTGTCTCTCTCTAACTTTTGGGTTTTCGAGACAGGG  550

seq1  TTTCTCTGTGTAGTTCTGGCTGTCCTGGAACTCCCTCTATAGACCAGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGTGTAGTTCTGGCTGTCCTGGAACTCCCTCTATAGACCAGGCT  600

seq1  GGTCTCGAACTCAAAGGTCCACCTGCCTCTGCCTCCTATGGGCTGGGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCGAACTCAAAGGTCCACCTGCCTCTGCCTCCTATGGGCTGGGATT  650

seq1  AAAGGCATGCACCATCACTGCCTAGC-TTTCCAGTTTCTTTC-TTTTTTT  698
      |||||||||||||||||||||||||| ||||||||||||||| |||||||
seq2  AAAGGCATGCACCATCACTGCCTAGCTTTTCCAGTTTCTTTCTTTTTTTT  700

seq1  TTTTTCTTTTTTTTTTTTTTTTGGTTTTTTGAGACAGGG-TTTCTCTGTA  747
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTTTTCTTTTTTTTTTTTTTTTGGTTTTTTGAGACAGGGTTTTCTCTGTA  750

seq1  TAGCCCTGGCTGTCCTGGAACTCAC-TTTGTAGACCGGGCTGGCCTCGAA  796
      ||||||||||||||||||||||||| ||||||||||||||||||||| ||
seq2  TAGCCCTGGCTGTCCTGGAACTCACTTTTGTAGACCGGGCTGGCCTCTAA  800

seq1  CTC-AGAAATCCGCCTGCCTCTGCC--TCCCGAGT-GCTGGGATTAAAGG  842
      ||| | |||||||||||||||||||   ||||||| ||||||||| ||||
seq2  CTCAAAAAATCCGCCTGCCTCTGCCCTCCCCGAGTGGCTGGGATTTAAGG  850

seq1  CGTGCGCCACCA-CGCCCGGCCAGTTTCTTTTTTATATTCAAGTAATACT  891
      |||||||||||| | ||||| || ||| |||||||| ||||| |||||||
seq2  CGTGCGCCACCACCTCCCGGGCAATTTTTTTTTTATTTTCAA-TAATACT  899

seq1  CCAGTGTATGGATGTCCAATCTTTTGCTTCTCCA  925
      || |||| ||||||| |||| |||||||| ||||
seq2  CC-GTGTTTGGATGTTCAAT-TTTTGCTTTTCCA  931