BAC Information

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BAC

Clone NameB6Ng01-077P14
Chromosome6 (Build37)
Map Location 113,695,686 - 113,861,494
singlet/doubletdoublet
Overlap geneAtp2b2
Upstream geneSrgap3, EG666387, EG620161, LOC666397, Thumpd3, EG434078, Setd5, Lhfpl4, Mtmr14, Cpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2, 4931417G12Rik, 6720456B07Rik, Vhlh, Irak2, Tatdn2, Ghrl, Sec13
Downstream geneSlc6a11, LOC666491, Slc6a1, Hrh1, Atg7, Vgll4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077P14.bB6Ng01-077P14.g
ACCDH893804DH893805
length1,079449
definitionDH893804|Mus musculus domesticus DNA, BAC clone: B6Ng01-077P14, 5' end.DH893805|Mus musculus domesticus DNA, BAC clone: B6Ng01-077P14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,860,397 - 113,861,494)(113,695,686 - 113,696,140)
sequence
gaattcacttctgtaagttgtcctctgacctccacgtgtgccgcacacct
aaacaaacaaacaaataaataaatgtcatcttagaaaattaaaaggctgt
tgggtaagttaaattatgtgatagtcccataagaataggacacatgcacg
cgcgcgcgcgcgcgcgcacacacacacacacacacacacacacacacaca
ctgcagagcctcaaattgccactgggggcgccatcgctcacattcccttc
atccagaaaggattcatatggtctcagcttcaaccataatcttaactaag
ggttaggaagtagaggaaaaatgagaactagactcatcaggggtgagttc
ctgctacgtaaaacactttaaacggcattcatgcagagcaagaggtgacg
gccacctgggaagtcactcacctagaaaggggataattcctcaggatgct
ggagagttggacaagacactccctggggaacaatgagtgttttctttttg
ttcttgataaaccagagtggccaggtgtgttctcagggaacaagaaagga
gtgtccaggccaagagatggatggctgccaggttccactgccttttcccc
ttaagccagagaggcttcctgaaggaggcatgttctggcttcttggccca
gggctgctcatgggctgacctccactagcctctcacagtcacatggccat
ccatcagaagcctcctcaggcagggtagctgtagccctccttgccagcct
tcctccagttcccagcgcagcccttcaccagctggttgtacaggctgtcc
tcagaagaaaggaacttccaggtagctggccttcagccaggctactgcag
ataggatcacggggctgtggaggaagccaggccatgtctattacccacac
tgcttttggcagagtcctgtgtttgtcaggaatggaagaagccagtcctc
aatctctggtgcccagcatgctcccgcccttgccagctgcttcccctctg
cagtcctagacagaaagagaagcagctaggacagggcactgctgcttcac
ctgcaggaggggcttctcagcggtatagc
tttatttacaattattgtctagataaaaaaattcataaaaacagatgaat
ggtcataaattattgaccccctaatggggtgaactgccaaacgtatccca
tgctgctagatataggacgcagaagtgcaagcttgtgtattacagtgagt
tctgacaaaccaaccatctcctgtgtaggtgtgtgtgtgtatggaagagt
gtgagagtgaggggctggggcataggctatctctcattcctgacaccggg
aagccagcactaatgtcaggcctccttgctagtttcctctgctcctgtct
gagaacctggctctgctcagagaaccccttcctctttgccctggaggcct
ggttccaaagcccgaggaccccggtttgttaagagcaagaaccctggtgg
catggaatgaggtcatagatgcatggttgtatgaaggagggcaggatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_113860397_113861494
seq2: B6Ng01-077P14.b_48_1126 (reverse)

seq1  GCTATACCCGCTGAGGAAGCCCCTCCCTGGCAGGTGAAGCAGGCAGTGCC  50
      |||||| ||||||| |||||||||||   |||||||||||| |||||| |
seq2  GCTATA-CCGCTGA-GAAGCCCCTCC--TGCAGGTGAAGCA-GCAGTG-C  44

seq1  CCTGGTCCCTAGCTGCTTCTCTTTCTGGTCTAGGGACTGGCAAGAGGGGA  100
      ||||   ||||||||||||||||||| ||||| ||||||   ||||||||
seq2  CCTG--TCCTAGCTGCTTCTCTTTCT-GTCTA-GGACTG--CAGAGGGGA  88

seq1  AGCCAGGCTGGCAAGGGGCGGGGAGCATGGCTGGGCACCAGAGATTGAGG  150
      |||   |||||||||||   |||||||| |||||||||||||||||||||
seq2  AGC--AGCTGGCAAGGG--CGGGAGCAT-GCTGGGCACCAGAGATTGAGG  133

seq1  ACTGGCTTCTTCCATTCCCTGACAAAACACAGGACTCTGCCAAAAGCAGT  200
      |||||||||||||||| |||||| ||||||||||||||||||||||||||
seq2  ACTGGCTTCTTCCATT-CCTGAC-AAACACAGGACTCTGCCAAAAGCAGT  181

seq1  GTGGGTAATAGACATGGCCTGGCTTCCTCCACAGCCCCCTGATCCTATCT  250
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTGGGTAATAGACATGGCCTGGCTTCCTCCACAGCCCCGTGATCCTATCT  231

seq1  GCAGTAGCCTGGCTGAAGGCCAGCTACCTGGAAGTTCCTTTCTTCTGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAGCCTGGCTGAAGGCCAGCTACCTGGAAGTTCCTTTCTTCTGAGG  281

seq1  ACAGCCTGTACAACCAGCTGGTGAAGGGCTGCGCTGGGAACTGGAGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTGTACAACCAGCTGGTGAAGGGCTGCGCTGGGAACTGGAGGAAG  331

seq1  GCTGGCAAGGAGGGCTACAGCTACCCTGCCTGAGGAGGCTTCTGATGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCAAGGAGGGCTACAGCTACCCTGCCTGAGGAGGCTTCTGATGGAT  381

seq1  GGCCATGTGACTGTGAGAGGCTAGTGGAGGTCAGCCCATGAGCAGCCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGTGACTGTGAGAGGCTAGTGGAGGTCAGCCCATGAGCAGCCCTG  431

seq1  GGCCAAGAAGCCAGAACATGCCTCCTTCAGGAAGCCTCTCTGGCTTAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGAAGCCAGAACATGCCTCCTTCAGGAAGCCTCTCTGGCTTAAGG  481

seq1  GGAAAAGGCAGTGGAACCTGGCAGCCATCCATCTCTTGGCCTGGACACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGGCAGTGGAACCTGGCAGCCATCCATCTCTTGGCCTGGACACTC  531

seq1  CTTTCTTGTTCCCTGAGAACACACCTGGCCACTCTGGTTTATCAAGAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTGTTCCCTGAGAACACACCTGGCCACTCTGGTTTATCAAGAACA  581

seq1  AAAAGAAAACACTCATTGTTCCCCAGGGAGTGTCTTGTCCAACTCTCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAACACTCATTGTTCCCCAGGGAGTGTCTTGTCCAACTCTCCAG  631

seq1  CATCCTGAGGAATTATCCCCTTTCTAGGTGAGTGACTTCCCAGGTGGCCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGAGGAATTATCCCCTTTCTAGGTGAGTGACTTCCCAGGTGGCCG  681

seq1  TCACCTCTTGCTCTGCATGAATGCCGTTTAAAGTGTTTTACGTAGCAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTCTTGCTCTGCATGAATGCCGTTTAAAGTGTTTTACGTAGCAGGA  731

seq1  ACTCACCCCTGATGAGTCTAGTTCTCATTTTTCCTCTACTTCCTAACCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACCCCTGATGAGTCTAGTTCTCATTTTTCCTCTACTTCCTAACCCT  781

seq1  TAGTTAAGATTATGGTTGAAGCTGAGACCATATGAATCCTTTCTGGATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAAGATTATGGTTGAAGCTGAGACCATATGAATCCTTTCTGGATGA  831

seq1  AGGGAATGTGAGCGATGGCGCCCCCAGTGGCAATTTGAGGCTCTGCAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATGTGAGCGATGGCGCCCCCAGTGGCAATTTGAGGCTCTGCAGTG  881

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGCGCGCG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGCGCGCG  931

seq1  TGCATGTGTCCTATTCTTATGGGACTATCACATAATTTAACTTACCCAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTGTCCTATTCTTATGGGACTATCACATAATTTAACTTACCCAAC  981

seq1  AGCCTTTTAATTTTCTAAGATGACATTTATTTATTTGTTTGTTTGTTTAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTTAATTTTCTAAGATGACATTTATTTATTTGTTTGTTTGTTTAG  1031

seq1  GTGTGCGGCACACGTGGAGGTCAGAGGACAACTTACAGAAGTGAATTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCGGCACACGTGGAGGTCAGAGGACAACTTACAGAAGTGAATTC  1079

seq1: chr6_113695686_113696140
seq2: B6Ng01-077P14.g_69_523

seq1  GAATTCTTTATTTACAATTATTGTCTAGATAAAAAAATTCATAAAAACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATTTACAATTATTGTCTAGATAAAAAAATTCATAAAAACAG  50

seq1  ATGAATGGTCATAAATTATTGACCCCCTAATGGGGTGAACTGCCAAACGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGGTCATAAATTATTGACCCCCTAATGGGGTGAACTGCCAAACGT  100

seq1  ATCCCATGCTGCTAGATATAGGACGCAGAAGTGCAAGCTTGTGTATTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATGCTGCTAGATATAGGACGCAGAAGTGCAAGCTTGTGTATTACA  150

seq1  GTGAGTTCTGACAAACCAACCATCTCCTGTGTAGGTGTGTGTGTGTATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTCTGACAAACCAACCATCTCCTGTGTAGGTGTGTGTGTGTATGG  200

seq1  AAGAGTGTGAGAGTGAGGGGCTGGGGCATAGGCTATCTCTCATTCCTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGTGAGAGTGAGGGGCTGGGGCATAGGCTATCTCTCATTCCTGAC  250

seq1  ACCGGGAAGCCAGCACTAATGTCAGGCCTCCTTGCTAGTTTCCTCTGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGGAAGCCAGCACTAATGTCAGGCCTCCTTGCTAGTTTCCTCTGCTC  300

seq1  CTGTCTGAGAACCTGGCTCTGCTCAGAGAACCCCTTCCTCTTTGCCCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGAGAACCTGGCTCTGCTCAGAGAACCCCTTCCTCTTTGCCCTGG  350

seq1  AGGCCTGGTTCCAAAGCCCGAGGACCCCGGTTTGTTAAGAGCAAGAACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGGTTCCAAAGCCCGAGGACCCCGGTTTGTTAAGAGCAAGAACCC  400

seq1  TGGTGGCATGGAATGAGGTCATAGATGCATGGTTGAATGAAGGAGGGCAG  450
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGGTGGCATGGAATGAGGTCATAGATGCATGGTTGTATGAAGGAGGGCAG  450

seq1  GATGA  455
      |||||
seq2  GATGA  455