BAC Information

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BAC

Clone NameB6Ng01-078D10
Chromosome6 (Build37)
Map Location 8,255,517 - 8,387,169
singlet/doubletdoublet
Overlap geneLOC100036521, LOC667028
Upstream geneTac1, LOC667511, Asns, EG667529, C1galt1, LOC100040661, Col28a1, BC020002, Rpa3
Downstream geneA430035B10Rik, Glcci1, Ica1, LOC100040238, Nxph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078D10.bB6Ng01-078D10.g
ACCDH893977DH893978
length1,0361,090
definitionDH893977|Mus musculus domesticus DNA, BAC clone: B6Ng01-078D10, 5' end.DH893978|Mus musculus domesticus DNA, BAC clone: B6Ng01-078D10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,386,616 - 8,387,169)(8,255,517 - 8,256,611)
sequence
gaattcaaaggttgatttaattcagtaaactatctgtgaaaagactggac
cccccccctttcaggtccacaccagcacctaggtaccttgggcacagagt
cttcggacacccgcaaggtacccacaggaccctccacaggatcttaagac
ctctggtgagtggatcacaacttctgccaggaggcaggttcgaataccag
atatctgggcatcttccctgcaagaggagagcttgcctgcagagagtact
ctgaacactgaaactcaggagagagatagtctcccaggtctgctgataga
ggttaacataatcacctgaggaacaagctctaaccagagaaaactacaac
aactaactccagagattaccagatgtcgaaaggcaaatgtaagaatctta
ctaacagaaaccaagaccactcaccatcatcagaacacagcactcccacc
ccacccagtcctgggcaccccaacacaccagaaaagatagtccctaattt
aaaagcatatctcatgatgatggtagaggacatcaagaaggactttaata
actcacttaaagaaatacaggagaacactgctaaacagatagaagacctt
aaagaggaagcagaaaaatcccttaaagaattgcaggaaaacatgaccaa
acaggtgatggaattgaataaaaccatccaagacctaaaaagggaagtag
acacaataaagaaaacccaaagtgaggcaacgctggagatagaaacccta
ggaaagaaatctggaaccatagatgcgagcatcagcaacacaatacaaga
gatgaaagagagaatctcatgtgcagaagattccatagagaacatcggca
caacaatcaaagaaaatacaaaatgcaaaaagatcctaactcaaaacatt
cagaaaatccaggacacaatgagaagaccaaacctacggataatagagta
gatgagaatgagatttcaagaaaagaaacgactggacaaagcatatttca
aagtctgtgtgactcggaaatgaaacttctttcttt

gaattctgattctgttgcaaaatggcatgaagaagaacacctgtgtggag
ctagtcatattggatacatacttagtatgtgtgcacatcaaaagtttttg
aagcaattatttgaacttaactataatacctttggccacctctacataaa
gttaggatgcttttacttgagaaactcctaggtctgacactactcaggag
tgagacagtagacaagttctttcatggcttttagctttagtttgctaatt
tatacaataagacgtatgaacacctctcagagcttgacacatagaataaa
tagtagccatgtatatcacagaggagcaatcaagaaatggtttattgctg
gggtgtaaaggtacatgcctttaatcccaacactccggaggcagagacag
tcgaagttcaaggctagcctggtctacagagcaagtcccaggacagccaa
aggtacacagaaaaacccagtcttttttttttttttcttttttttttaaa
gtgtctttggctgccctctgaatggtatcaatatgtcaatgtttcttaat
agctcttccattcttccaacaatacagtgggctactgtccattccattgt
taagcactgggaataagtggtgaatatggtacacttaactggcctcatag
gcctgagaatcagtgtgaagagctgatattaagtccataaccactttaaa
tgcacataagactgaaacattgagaactagcgaaagcagttaaccaaatg
taacagggggaggaagccttccctatgtaactaatatttgaactgaaaat
ggaaacatgaatgcgctaattgtagagcaattgggagttccagactgagg
agagaatatgtataatggccctttggagggaaagcatgtaacccagttat
tatttagcaaaaggcccacttctagagagccataagtatggtcacatgta
gtagctccgctcattccagactgtgtgctccccttgcatgtctttatctt
tgaccagtagaatagacctaacaaatacagtgggatcagacccccacgtc
ctcttgaaagaactaagccctttgagatgatgcagatcgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_8386616_8387169
seq2: B6Ng01-078D10.b_46_599 (reverse)

seq1  GAGTTATTAAAGTCCTTCTTGATGTCCTCTACCATCATCATGAGATATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTATTAAAGTCCTTCTTGATGTCCTCTACCATCATCATGAGATATGC  50

seq1  TTTTAAATTAGGGACTATCTTTTCTGGTGTGTTGGGGTGCCCAGGACTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATTAGGGACTATCTTTTCTGGTGTGTTGGGGTGCCCAGGACTGG  100

seq1  GTGGGGTGGGAGTGCTGTGTTCTGATGATGGTGAGTGGTCTTGGTTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTGGGAGTGCTGTGTTCTGATGATGGTGAGTGGTCTTGGTTTCTG  150

seq1  TTAGTAAGATTCTTACATTTGCCTTTCGACATCTGGTAATCTCTGGAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAAGATTCTTACATTTGCCTTTCGACATCTGGTAATCTCTGGAGTT  200

seq1  AGTTGTTGTAGTTTTCTCTGGTTAGAGCTTGTTCCTCAGGTGATTATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTGTAGTTTTCTCTGGTTAGAGCTTGTTCCTCAGGTGATTATGTT  250

seq1  AACCTCTATCAGCAGACCTGGGAGACTATCTCTCTCCTGAGTTTCAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTATCAGCAGACCTGGGAGACTATCTCTCTCCTGAGTTTCAGTGT  300

seq1  TCAGAGTACTCTCTGCAGGCAAGCTCTCCTCTTGCAGGGAAGATGCCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTACTCTCTGCAGGCAAGCTCTCCTCTTGCAGGGAAGATGCCCAG  350

seq1  ATATCTGGTATTCGAACCTGCCTCCTGGCAGAAGTTGTGATCCACTCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGGTATTCGAACCTGCCTCCTGGCAGAAGTTGTGATCCACTCACC  400

seq1  AGAGGTCTTAAGATCCTGTGGAGGGTCCTGTGGGTACCTTGCGGGTGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCTTAAGATCCTGTGGAGGGTCCTGTGGGTACCTTGCGGGTGTCC  450

seq1  GAAGACTCTGTGCCCAAGGTACCTAGGTGCTGGTGTGGACCTGAAAGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTCTGTGCCCAAGGTACCTAGGTGCTGGTGTGGACCTGAAAGGGG  500

seq1  GGGGGTCCAGTCTTTTCACAGATAGTTTACTGAATTAAATCAACCTTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTCCAGTCTTTTCACAGATAGTTTACTGAATTAAATCAACCTTTGA  550

seq1  ATTC  554
      ||||
seq2  ATTC  554


seq1: chr6_8255517_8256611
seq2: B6Ng01-078D10.g_71_1160

seq1  GAATTCTGATTCTGTTGCAAAATGGCATGAAGAAGAACACCTGTGTGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATTCTGTTGCAAAATGGCATGAAGAAGAACACCTGTGTGGAG  50

seq1  CTAGTCATATTGGATACATACTTAGTATGTGTGCACATCAAAAGTTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCATATTGGATACATACTTAGTATGTGTGCACATCAAAAGTTTTTG  100

seq1  AAGCAATTATTTGAACTTAACTATAATACCTTTGGCCACCTCTACATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATTATTTGAACTTAACTATAATACCTTTGGCCACCTCTACATAAA  150

seq1  GTTAGGATGCTTTTACTTGAGAAACTCCTAGGTCTGACACTACTCAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGATGCTTTTACTTGAGAAACTCCTAGGTCTGACACTACTCAGGAG  200

seq1  TGAGACAGTAGACAAGTTCTTTCATGGCTTTTAGCTTTAGTTTGCTAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGTAGACAAGTTCTTTCATGGCTTTTAGCTTTAGTTTGCTAATT  250

seq1  TATACAATAAGACGTATGAACACCTCTCAGAGCTTGACACATAGAATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAATAAGACGTATGAACACCTCTCAGAGCTTGACACATAGAATAAA  300

seq1  TAGTAGCCATGTATATCACAGAGGAGCAATCAAGAAATGGTTTATTGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGCCATGTATATCACAGAGGAGCAATCAAGAAATGGTTTATTGCTG  350

seq1  GGGTGTAAAGGTACATGCCTTTAATCCCAACACTCCGGAGGCAGAGACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTAAAGGTACATGCCTTTAATCCCAACACTCCGGAGGCAGAGACAG  400

seq1  TCGAAGTTCAAGGCTAGCCTGGTCTACAGAGCAAGTCCCAGGACAGCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAGTTCAAGGCTAGCCTGGTCTACAGAGCAAGTCCCAGGACAGCCAA  450

seq1  AGGTACACAGAAAAACCCAGTCTTTTTTTTTTTTTTCTTTTTTTTTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACACAGAAAAACCCAGTCTTTTTTTTTTTTTTCTTTTTTTTTTAAA  500

seq1  GTGTCTTTGGCTGCCCTCTGAATGGTATCAATATGTCAATGTTTCTTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTTGGCTGCCCTCTGAATGGTATCAATATGTCAATGTTTCTTAAT  550

seq1  AGCTCTTCCATTCTTCCAACAATACAGTGGGCTACTGTCCATTCCATTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTCCATTCTTCCAACAATACAGTGGGCTACTGTCCATTCCATTGT  600

seq1  TAAGCACTGGGAATAAGTGGTGAATATGGTACACTTAACTGGCCTCATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACTGGGAATAAGTGGTGAATATGGTACACTTAACTGGCCTCATAG  650

seq1  GCCTGAGAATCAGTGTGAAGAGCTGATATTAAGTCCATAACCAC-TTAAA  699
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCCTGAGAATCAGTGTGAAGAGCTGATATTAAGTCCATAACCACTTTAAA  700

seq1  TGCACATAAGACTGAAACATTGAGAACTAGCGAAAGCAGTTAACCAAATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATAAGACTGAAACATTGAGAACTAGCGAAAGCAGTTAACCAAATG  750

seq1  TAACAGGGGGAGGAAGCCTTCCCTATGTAACTAATATTTGAACTGAAAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGGGGAGGAAGCCTTCCCTATGTAACTAATATTTGAACTGAAAAT  800

seq1  GGAAACATGAATGCGCTAATTGTAGAGCAATTGGGAGTTCCAGACTGAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACATGAATGCGCTAATTGTAGAGCAATTGGGAGTTCCAGACTGAGG  850

seq1  AGAGAATATGTATAATGGCCCTTTGGAGGGAAGGCATGTAACCCAGTTAT  899
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGAGAATATGTATAATGGCCCTTTGGAGGGAAAGCATGTAACCCAGTTAT  900

seq1  TATTTAGCAAAAGGCCCACTTCTAGAGAGCCATAAGTATGGTCACAATGT  949
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TATTTAGCAAAAGGCCCACTTCTAGAGAGCCATAAGTATGGTCAC-ATGT  949

seq1  AGTAGGCTCCGCTCATTCCAGACTGTGTGCTCTCTTGGCATGTCTTTATC  999
      |||| ||||||||||||||||||||||||||| | | |||||||||||||
seq2  AGTA-GCTCCGCTCATTCCAGACTGTGTGCTCCCCTTGCATGTCTTTATC  998

seq1  TTATGACCAGTAGAATAGACCTAACAAATACAGTTGGGTCAGA-CTCCAC  1048
      || ||||||||||||||||||||||||||||||| || ||||| | ||||
seq2  TT-TGACCAGTAGAATAGACCTAACAAATACAGTGGGATCAGACCCCCAC  1047

seq1  GTTCCTCTTTGGAGAGAACTAAGCCCTTTGAGATGGATGCAGATCGC  1095
      | |||||||  || |||||||||||||||||||| ||||||||||||
seq2  G-TCCTCTT--GAAAGAACTAAGCCCTTTGAGAT-GATGCAGATCGC  1090


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