BAC Information

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BAC

Clone NameB6Ng01-078J07
Chromosome6 (Build37)
Map Location 103,887,954 - 103,889,183
singlet/doubletsinglet
Overlap genenone
Upstream geneChl1, LOC666141
Downstream geneLOC100043345, Cntn6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078J07.bB6Ng01-078J07.g
ACCDH894237DH894238
length1,199588
definitionDH894237|Mus musculus domesticus DNA, BAC clone: B6Ng01-078J07, 5' end.DH894238|Mus musculus domesticus DNA, BAC clone: B6Ng01-078J07, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcctgcaggtaaatttttggaaaaagtttgtgaatctttagaca
ttggtccatttaataaaaaaattattccttctttgggcaaaatagaggaa
gaacaaactgccattattttcataaacatttatggtgaaacattaaccac
tttatcctaagacatcaaatgtatactgcaatagaaacagcaaatcatga
cattctgacgagttttcatagcatattctacccagaaacctgcctttgct
actgaacattccttaaatgcttacccagagtcaaatactgatgtaaaagt
ttttcaggcttcttacattttaatccccttttatatcttctggtcgcttt
tccctagatccagtcagatggtgtcccattcaacaccattatgcttgtta
tagtaacacgccctactcttgccctttacatttgtgtcaaagctgggata
ggccactatggaataactgcaatttatgtgaccaacatgccactcacaag
aaagtgaatacattcccacaggtcaatctttcccaaggaggtatggaaca
tcatgtgcatatattccctgctccagttttcagagacagctcaacactgt
ggtctgcagagctctcaaggtcaagggctctggagcaggcttcagaccta
ctgggtacacagtgttcagcatgaaaacagactggctggactcagccttc
tttactgcactctttctaatcatctcactctcagggaagacctgcatgcc
atcttttcacttagcctctgctttggagggaaaactcaagagtacacaca
gcacactgaactactgagaagcatactgcttcacacaggttttacaataa
aggcactgacatggtcctgtcacttcctcaaagttaagcttagtataaac
ttagatctggactcaacctgtccgactcagagccttgtattcaaatgcac
ccaggacttaatcttcctcctgttatagcacacatgagaaagtggaagca
atctaacagtgtgaccacgctactacagaagcagataaccaggacctgtg
taaaccatgaaatgcatgctcatcataaaatgcccacatctttcatatct
atttctcacttcacgtcacacctcggactttactttaaataggttagggt
ttcaggtctctttaacagtgtcactgaattcttagagtctaggaacaaa

gaattctcataagaggaaactcaaaggtatgagaaacagtttaaagaaat
agtcaacattcttagccatcagggaaatgcaaaacaaactatattgagat
tccattttacatctctcagattgcctaagatcaataaaacaagtttcatt
tcatgatgatgatgacctggaataaagggaacagtcatctgctgctgatt
ggagtgctaacttgaacagctactataaaaattagatgatgattgctcag
aaaaaatattcaaaatagccagaaattggaaacaacctaaatgaccctca
acagaagaattaagaacatgcaatacatttacacaataaggtattacttg
gcagtaaaccactatccaaacagtatacatggagggatctatgactccag
atacatttgtagcagagaatggccttatctggaatcaatgggaggggagg
cccttcatcctgtgaaggtttgatgccccagtgtaggtggatgctagact
tgcaaggcaggagtgagttagagggtagaggagcatcctcactgaagcaa
aggggaggggagagggtctatgggatggggtttgtgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_103887954_103889183
seq2: B6Ng01-078J07.b_45_1243 (reverse)

seq1  TTTGTTCCTATGACTACTAATGAACTCAGTGACACATTGTTAAAAGGAGA  50
      |||||||||| |||| |||| ||| ||||||||||  |||||||  ||||
seq2  TTTGTTCCTA-GACT-CTAA-GAATTCAGTGACAC--TGTTAAA--GAGA  43

seq1  CTTGAAACCCTAACCCTAATTTTAAAAAGTTAAAGTCTGAGGTGTGAACG  100
      | ||||||||||| ||||  ||||||    ||||||| |||||||| |||
seq2  CCTGAAACCCTAA-CCTA--TTTAAA---GTAAAGTCCGAGGTGTG-ACG  86

seq1  TG-AGTGAGAAAATTAGGATATGGAAAGGATTGTGGGCATTTTATGATGG  149
      || |||||||||  || ||||| |||||   ||||||||||||||||| |
seq2  TGAAGTGAGAAA--TA-GATAT-GAAAG--ATGTGGGCATTTTATGAT-G  129

seq1  AGCCATGCATTTCCATGGTTTACACAGGGTCCTGGTTTATCTGCTTCTGT  199
      || ||||||||| ||||||||||||| |||||||| ||||||||||||||
seq2  AG-CATGCATTT-CATGGTTTACACA-GGTCCTGG-TTATCTGCTTCTGT  175

seq1  AGGTAGCGTGGTTCACACTTGTTAGATTGCTTCCACTTTCTCATGTGGTG  249
      | ||||||||| |||||| ||||||||||||||||||||||||||| |||
seq2  A-GTAGCGTGG-TCACAC-TGTTAGATTGCTTCCACTTTCTCATGT-GTG  221

seq1  CTAATAAACAGGAGGAAGATTAAGTCCTGGGTGCATTTGAATACAAGGCT  299
      |||   ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTA--TAACAGGAGGAAGATTAAGTCCTGGGTGCATTTGAATACAAGGCT  269

seq1  CTGAGTCGGACAGGTTGAGTCCAGATCTAAGTTTAATACTAAGCTTAACT  349
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTGAGTCGGACAGGTTGAGTCCAGATCTAAGTTT-ATACTAAGCTTAACT  318

seq1  TTGAGGAAGTGACAGGACCATGTCAGTGCCTTTATTGTAAAACCTGTGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGAAGTGACAGGACCATGTCAGTGCCTTTATTGTAAAACCTGTGTG  368

seq1  AAGCAGTATGCTTCTCAGTAGTTCAGTGTGCTGTGTGTACTCTTGAGTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTATGCTTCTCAGTAGTTCAGTGTGCTGTGTGTACTCTTGAGTTT  418

seq1  TCCCTCCAAAGCAGAGGCTAAGTGAAAAGATGGCATGCAGGTCTTCCCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCAAAGCAGAGGCTAAGTGAAAAGATGGCATGCAGGTCTTCCCTG  468

seq1  AGAGTGAGATGATTAGAAAGAGTGCAGTAAAGAAGGCTGAGTCCAGCCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGATGATTAGAAAGAGTGCAGTAAAGAAGGCTGAGTCCAGCCAG  518

seq1  TCTGTTTTCATGCTGAACACTGTGTACCCAGTAGGTCTGAAGCCTGCTCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTCATGCTGAACACTGTGTACCCAGTAGGTCTGAAGCCTGCTCC  568

seq1  AGAGCCCTTGACCTTGAGAGCTCTGCAGACCACAGTGTTGAGCTGTCTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCCTTGACCTTGAGAGCTCTGCAGACCACAGTGTTGAGCTGTCTCT  618

seq1  GAAAACTGGAGCAGGGAATATATGCACATGATGTTCCATACCTCCTTGGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTGGAGCAGGGAATATATGCACATGATGTTCCATACCTCCTTGGG  668

seq1  AAAGATTGACCTGTGGGAATGTATTCACTTTCTTGTGAGTGGCATGTTGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTGACCTGTGGGAATGTATTCACTTTCTTGTGAGTGGCATGTTGG  718

seq1  TCACATAAATTGCAGTTATTCCATAGTGGCCTATCCCAGCTTTGACACAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATAAATTGCAGTTATTCCATAGTGGCCTATCCCAGCTTTGACACAA  768

seq1  ATGTAAAGGGCAAGAGTAGGGCGTGTTACTATAACAAGCATAATGGTGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAGGGCAAGAGTAGGGCGTGTTACTATAACAAGCATAATGGTGTT  818

seq1  GAATGGGACACCATCTGACTGGATCTAGGGAAAAGCGACCAGAAGATATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGGACACCATCTGACTGGATCTAGGGAAAAGCGACCAGAAGATATA  868

seq1  AAAGGGGATTAAAATGTAAGAAGCCTGAAAAACTTTTACATCAGTATTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGATTAAAATGTAAGAAGCCTGAAAAACTTTTACATCAGTATTTG  918

seq1  ACTCTGGGTAAGCATTTAAGGAATGTTCAGTAGCAAAGGCAGGTTTCTGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGGTAAGCATTTAAGGAATGTTCAGTAGCAAAGGCAGGTTTCTGG  968

seq1  GTAGAATATGCTATGAAAACTCGTCAGAATGTCATGATTTGCTGTTTCTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATATGCTATGAAAACTCGTCAGAATGTCATGATTTGCTGTTTCTA  1018

seq1  TTGCAGTATACATTTGATGTCTTAGGATAAAGTGGTTAATGTTTCACCAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTATACATTTGATGTCTTAGGATAAAGTGGTTAATGTTTCACCAT  1068

seq1  AAATGTTTATGAAAATAATGGCAGTTTGTTCTTCCTCTATTTTGCCCAAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTATGAAAATAATGGCAGTTTGTTCTTCCTCTATTTTGCCCAAA  1118

seq1  GAAGGAATAATTTTTTTATTAAATGGACCAATGTCTAAAGATTCACAAAC  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAATAATTTTTTTATTAAATGGACCAATGTCTAAAGATTCACAAAC  1168

seq1  TTTTTCCAAAAATTTACCTGCAGGAGAATTC  1230
      |||||||||||||||||||||||||||||||
seq2  TTTTTCCAAAAATTTACCTGCAGGAGAATTC  1199


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