BAC Information

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BAC

Clone NameB6Ng01-078M14
Chromosome6 (Build37)
Map Location 127,585,807 - 127,713,474
singlet/doubletdoublet
Overlap genePrmt8
Upstream geneKcna1, Kcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2, Tpi-rs11, EG243642, LOC100043578, EG640703, LOC100043848, Parp11, Efcab4b
Downstream geneTspan11, Tspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078M14.bB6Ng01-078M14.g
ACCDH894389DH894390
length6231,119
definitionDH894389|Mus musculus domesticus DNA, BAC clone: B6Ng01-078M14, 5' end.DH894390|Mus musculus domesticus DNA, BAC clone: B6Ng01-078M14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,585,807 - 127,586,429)(127,712,340 - 127,713,474)
sequence
gaattcacttctccgcaggagccggcagagttgtgttgcttaattaggat
tgtctgaggtgaacttagaatttgattcagtctgttatggtcgtcgagtg
actttgtaattattctgtgaagaacaagaagaaaggaagggcacagatga
tgcttaaggaatgacgctatcaggcgcttggtgggagggtccccaggctg
atgccattgttagatgctcagtaatgacattaaggggtggcagaggagtg
actgtcctcccagcccagtgagcaaagtgacaagtttattaggccgttga
gtactctctaccacagaaccacactactgtgcacataggaattctgggac
cttggcggtgagactggagagccacttagtttccatgccaaggttcagaa
cacaggcaaagataaggcccagttatgaacttaactttccagtgatgcct
gcttctgtttcattgctttttccttcctccttccctccctcccttccttc
attttctccttcctcccttctctttccttctttcctttccttctctgaat
gctgctgttttcttgtataacagtagcatagtcttcctttccctcccctc
ctctcccttcccctcccatcctc
gaattcttcttggaatgttctgttgacttgctaacccagcaagagcatca
tcacaggctgaggaagacccagtgatgacttggtctgggtacccatgagc
gctcctagagtgaaagtataagtgagctgattttcacagtggtatatata
cttggacggtccggctaataactattagcttccgcttcagtttcagctga
agtatgtggccccattataccaatgtccgaaaactgagaggtggggtaag
aggcagaggtagctgtttctcttaggatgctctgcctctgtgtctctgaa
aacaccaactccctgcacaggccctggagtccagctgctggcttttcaat
ccagttctagaatccctagatgtgttgtgggttgaatcagtgagaagatt
gttgttatgattaaatacattcaggcttgtttctggccaacacttggtgt
ttgaccgctatcctgctggcttataagaaactcgcctgccaggagttcag
tcttggtgggctctctcttccttgcttctcttgttgaaatgacccccccc
tttccattacccacatccatttcccttcttcagcaaacacctattgcaac
cctgaagtgagctcgggagaattaagaagatacccacatgtcctcccctc
cccctctggcaaagttggctttgtagagagtcctaaattggcttttggct
gtcaaagagggtgaaacacaacactcctgtctccagttctggagtgagct
tcatttcctcctctttgctaactgcgacgtgaagtgatttctcacatacc
agtgtggaacatgcaaaaaaatctgtaaaacactacttacaccttggact
gtactgtgccagcagggaagaatgggcagactgacatgtgtgggctgcca
aggtaactgcagaggctattgtgtgtatgagacacgggggttcatctatg
caaactgaagcagtcagtggatggacagggacctcaaaagtgcttgctgt
agctcttgtctctgatgttctacccaagatactagtgtcccctcatgagg
tttcttgtcaagttcagagaaatggtttcccaggttttctatgtatctca
ttgatggagggtttcttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_127585807_127586429
seq2: B6Ng01-078M14.b_45_667

seq1  GAATTCACTTCTCCGCAGGAGCCGGCAGAGTTGTGTTGCTTAATTAGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCTCCGCAGGAGCCGGCAGAGTTGTGTTGCTTAATTAGGAT  50

seq1  TGTCTGAGGTGAACTTAGAATTTGATTCAGTCTGTTATGGTCGTCGAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAGGTGAACTTAGAATTTGATTCAGTCTGTTATGGTCGTCGAGTG  100

seq1  ACTTTGTAATTATTCTGTGAAGAACAAGAAGAAAGGAAGGGCACAGATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTAATTATTCTGTGAAGAACAAGAAGAAAGGAAGGGCACAGATGA  150

seq1  TGCTTAAGGAATGACGCTATCAGGCGCTTGGTGGGAGGGTCCCCAGGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAAGGAATGACGCTATCAGGCGCTTGGTGGGAGGGTCCCCAGGCTG  200

seq1  ATGCCATTGTTAGATGCTCAGTAATGACATTAAGGGGTGGCAGAGGAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATTGTTAGATGCTCAGTAATGACATTAAGGGGTGGCAGAGGAGTG  250

seq1  ACTGTCCTCCCAGCCCAGTGAGCAAAGTGACAAGTTTATTAGGCCGTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCTCCCAGCCCAGTGAGCAAAGTGACAAGTTTATTAGGCCGTTGA  300

seq1  GTACTCTCTACCACAGAACCACACTACTGTGCACATAGGAATTCTGGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCTCTACCACAGAACCACACTACTGTGCACATAGGAATTCTGGGAC  350

seq1  CTTGGCGGTGAGACTGGAGAGCCACTTAGTTTCCATGCCAAGGTTCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCGGTGAGACTGGAGAGCCACTTAGTTTCCATGCCAAGGTTCAGAA  400

seq1  CACAGGCAAAGATAAGGCCCAGTTATGAACTTAACTTTCCAGTGATGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCAAAGATAAGGCCCAGTTATGAACTTAACTTTCCAGTGATGCCT  450

seq1  GCTTCTGTTTCATTGCTTTTTCCTTCCTCCTTCCCTCCCTCCCTTCCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGTTTCATTGCTTTTTCCTTCCTCCTTCCCTCCCTCCCTTCCTTC  500

seq1  ATTTTCTCCTTCCTCCCTTCTCTTTCCTTCTTTCCTTTCCTTCTCTGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCCTTCCTCCCTTCTCTTTCCTTCTTTCCTTTCCTTCTCTGAAT  550

seq1  GCTGCTGTTTTCTTGTATAACAGTAGCATAGTCTTCCTTTCCCTCCCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGTTTTCTTGTATAACAGTAGCATAGTCTTCCTTTCCCTCCCCTC  600

seq1  CTCTCCCTTCCCCTCCCCTCCTC  623
      ||||||||||||||||| |||||
seq2  CTCTCCCTTCCCCTCCCATCCTC  623

seq1: chr6_127712340_127713474
seq2: B6Ng01-078M14.g_69_1187 (reverse)

seq1  GGAAGAACACCTCAATCAATGAGATAACTAGAAAACTTGGGAAACCATTT  50
      |||||||  |||| ||||||||||||  |||||||| |||||||||| ||
seq2  GGAAGAAACCCTCCATCAATGAGATACATAGAAAACCTGGGAAACCA-TT  49

seq1  TCTCTGAAACCTTTTGACAAGAAA-CTCATGAGTGGGCCACTAGGTATCT  99
      ||||||||     ||||||||||| |||||||| ||| ||||| ||||||
seq2  TCTCTGAA----CTTGACAAGAAACCTCATGAG-GGGACACTA-GTATCT  93

seq1  TGGGTAAGAACATTCAGAGACAAGAGCTACAGCATAGCAACTTTTTGGAG  149
      ||||| |||||| ||||||||||||||||||||| ||| ||||||  |||
seq2  TGGGT-AGAACA-TCAGAGACAAGAGCTACAGCA-AGC-ACTTTT--GAG  137

seq1  GTCCCTGTCCATCCACTGACTGCTTCAGTTTGCATAGATGGAACCCCCGT  199
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTCCCTGTCCATCCACTGACTGCTTCAGTTTGCATAGAT-GAACCCCCGT  186

seq1  GTCTCATACACACAATAGCCTCTTGCAGTTACCTTGGCAGCCCACACATT  249
      |||||||||||||||||||||| ||||||||||||||||||||||||| |
seq2  GTCTCATACACACAATAGCCTC-TGCAGTTACCTTGGCAGCCCACACA-T  234

seq1  GTCAGTCTGCCCATTTCTTCCCTGCTGGCACAGTACAGTCCAAGGTGTAA  299
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCTGCCCA-TTCTTCCCTGCTGGCACAGTACAGTCCAAGGTGTAA  283

seq1  GTAGTGTTTTTACAGATTTTTTTGCATGTTCCACACTGGTATGTGAG-AA  348
      |||||| |||||||||||||||||||||||||||||||||||||||| ||
seq2  GTAGTG-TTTTACAGATTTTTTTGCATGTTCCACACTGGTATGTGAGAAA  332

seq1  TCACTTCACGTCGCAGTTAGCAAAGAGGAGGAAATGAAGCTCACTCCAGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCACGTCGCAGTTAGCAAAGAGGAGGAAATGAAGCTCACTCCAGA  382

seq1  ACTGGAGACAGGAGTGTTGTGTTTCACCCTCTTTGACAGCCAAAAGCCAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGACAGGAGTGTTGTGTTTCACCCTCTTTGACAGCCAAAAGCCAA  432

seq1  TTTAGGACTCTCTACAAAGCCAACTTTGCCAGAGGGGGAGGGGAGGACAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGACTCTCTACAAAGCCAACTTTGCCAGAGGGGGAGGGGAGGACAT  482

seq1  GTGGGTATCTTCTTAATTCTCCCGAGCTCACTTCAGGGTTGCAATAGGTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTATCTTCTTAATTCTCCCGAGCTCACTTCAGGGTTGCAATAGGTG  532

seq1  TTTGCTGAAGAAGGGAAATGGATGTGGGTAATGGAAAGGGGGGGGTCATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGAAGAAGGGAAATGGATGTGGGTAATGGAAAGGGGGGGGTCATT  582

seq1  TCAACAAGAGAAGCAAGGAAGAGAGAGCCCACCAAGACTGAACTCCTGGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAGAGAAGCAAGGAAGAGAGAGCCCACCAAGACTGAACTCCTGGC  632

seq1  AGGCGAGTTTCTTATAAGCCAGCAGGATAGCGGTCAAACACCAAGTGTTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGAGTTTCTTATAAGCCAGCAGGATAGCGGTCAAACACCAAGTGTTG  682

seq1  GCCAGAAACAAGCCTGAATGTATTTAATCATAACAACAATCTTCTCACTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAAACAAGCCTGAATGTATTTAATCATAACAACAATCTTCTCACTG  732

seq1  ATTCAACCCACAACACATCTAGGGATTCTAGAACTGGATTGAAAAGCCAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACCCACAACACATCTAGGGATTCTAGAACTGGATTGAAAAGCCAG  782

seq1  CAGCTGGACTCCAGGGCCTGTGCAGGGAGTTGGTGTTTTCAGAGACACAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGACTCCAGGGCCTGTGCAGGGAGTTGGTGTTTTCAGAGACACAG  832

seq1  AGGCAGAGCATCCTAAGAGAAACAGCTACCTCTGCCTCTTACCCCACCTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGCATCCTAAGAGAAACAGCTACCTCTGCCTCTTACCCCACCTC  882

seq1  TCAGTTTTCGGACATTGGTATAATGGGGCCACATACTTCAGCTGAAACTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTTCGGACATTGGTATAATGGGGCCACATACTTCAGCTGAAACTG  932

seq1  AAGCGGAAGCTAATAGTTATTAGCCGGACCGTCCAAGTATATATACCACT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGGAAGCTAATAGTTATTAGCCGGACCGTCCAAGTATATATACCACT  982

seq1  GTGAAAATCAGCTCACTTATACTTTCACTCTAGGAGCGCTCATGGGTACC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAATCAGCTCACTTATACTTTCACTCTAGGAGCGCTCATGGGTACC  1032

seq1  CAGACCAAGTCATCACTGGGTCTTCCTCAGCCTGTGATGATGCTCTTGCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCAAGTCATCACTGGGTCTTCCTCAGCCTGTGATGATGCTCTTGCT  1082

seq1  GGGTTAGCAAGTCAACAGAACATTCCAAGAAGAATTC  1135
      |||||||||||||||||||||||||||||||||||||
seq2  GGGTTAGCAAGTCAACAGAACATTCCAAGAAGAATTC  1119