BAC Information

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BAC

Clone NameB6Ng01-080D16
Chromosome6 (Build37)
Map Location 138,886,775 - 139,012,290
singlet/doubletdoublet
Overlap genenone
Upstream gene9830102E05Rik, Mgst1, Lmo3, Igbp1b, EG668196
Downstream geneEG632971, LOC100043898, Pik3c2g, Plcz1, Capza3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080D16.bB6Ng01-080D16.g
ACCDH895426DH895427
length1,1401,125
definitionDH895426|Mus musculus domesticus DNA, BAC clone: B6Ng01-080D16, 5' end.DH895427|Mus musculus domesticus DNA, BAC clone: B6Ng01-080D16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,886,775 - 138,887,929)(139,011,167 - 139,012,290)
sequence
gaattcataggatttaaattttaaatataaaactgtaacgaagatagaga
aagggtgagaaatgtaacccaaaggatatattcccttttattaacaagga
aaggtaatatatattcttcatattgatactgtttatttagtacattataa
gcaaaacaataacaaaatatgatgctagtctcacaactagtttcttatac
aattactatgtttacctagtagagcaatcttttgtctcatttttggaatg
caaaaacattaaattaacaattttaatattttataccagctgtaaacaga
agttagattcaacatctcaaattgaatttttggaatgtataattgtagca
ttaaaagaatgaaactttatttttttttactctatcctgatacttgaaaa
ggaaaatgaatataatcccaacaaaggtacaaagtcaagtgtggggatga
ggtgatcttgggttttatggtgagtgttgtgccagtctgtactacccagt
gagactcctcatcaagacaacacatttaaaaaggaagagaaaaaataaat
ccatgaagttttcaagcatgttgtattctttatgtgaatttataagaatc
aattgagaagttagattttatcagatgcaagtgcaatttttttattctaa
tacaatgttagtatgttttcaagttaattctttcatgttatataagtaac
agatattgtgaaaaattagaggaagacaaatttctgttcaagacaaatta
gaggttggtaagaattatgactgcaccataatctaatatgttccctcaat
agtaagcccactccctactagagaaaacgtcaaggtgtattcagtgttta
agatcatttgtgggtcccctgaatgcattaaaatcaaatattctgcctgg
cattcatgccctttgtggaagactttctctatcaatctgcattatttccc
aagtcagaagcctctacagtagacaattcatattatgtgatatttactat
gttctaccataatttattcgatatgataatttaaagacactttatctttc
ttccttcagatattccaatatccatccaatataaggttgaacaatttgtt
tttcaagcctctcctcgaagtcatctatcagattttcttc
tgttgcaattcaatatctgagtctgcttcttcttttttaaccaagaacag
ccttcaaggatacattctcaaagagcacagaagactcgtggagaggcaat
gtctgagtgcattgactgctgttagcattgctttctaggaacagtctccc
tgtttagcacttgtatagatgtttttatgcagtttctctccatctctttt
taattaaacattcacacccttcaaacgccatacttataaaaacgtagctt
gtgatttgacagaatgatgttatggtattgagcactatgtgaattggttt
gaaagtagccagtgtggaatcacccatcaatcacaagtgcaaactcgggt
cactgaggctgtcaatttcaatcagctctgtaattaaatacatcaccaat
atggattttatgtaagaatgtcacttgttcctctcatgtctgctgtgggg
acaaaccacgtttcactctctcggtggtagcattctaaatatagtatttt
taagcacagaacatcttcatttatcttcctctgatttcctaaagaaaaat
ccatttactaatgtttggtctaaaagctatgttgttaaatatatatttga
gctgttttctatttaattaaaatgttgcagcctctcagttggcattttaa
actcatctttaacaccgtctgtgtcatttgttatgaagtaaatagataat
ggataataatcaccttttaaaagcctgaacaatttgtaattatggaaaat
ttgtaattagagatcctttattgtgtgtttcaaaagcagaagatgctgtt
ggttacagagaaataaattattcattctcgtttcagcatagtaccaaatt
atttcacactaagaaaaaaaatcttttattttttgaaacagctctaaagt
gccattgcctcttattgcacttatactatgtgggaaaaaaactgcatcaa
agctgtattaccaaatattatatgcctgccatttgatttaatcttcaata
agctccaggaatcaaggtccctggacagttaatctttagttttgtagccc
atgccaattcccaatatggttacctagggaattaggtcagtaagagagag
aaagcattgttcttattctgagaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_138886775_138887929
seq2: B6Ng01-080D16.b_46_1185

seq1  GAATTCATAGGATTTAAATTTTAAATATAAAACTGTAACGAAGATAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGGATTTAAATTTTAAATATAAAACTGTAACGAAGATAGAGA  50

seq1  AAGGGTGAGAAATGTAACCCAAAGGATATATTCCCTTTTATTAACAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGAGAAATGTAACCCAAAGGATATATTCCCTTTTATTAACAAGGA  100

seq1  AAGGTAATATATATTCTTCATATTGATACTGTTTATTTAGTACATTATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAATATATATTCTTCATATTGATACTGTTTATTTAGTACATTATAA  150

seq1  GCAAAACAATAACAAAATATGATGCTAGTCTCACAACTAGTTTCTTATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACAATAACAAAATATGATGCTAGTCTCACAACTAGTTTCTTATAC  200

seq1  AATTACTATGTTTACCTAGTAGAGCAATCTTTTGTCTCATTTTTGGAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTATGTTTACCTAGTAGAGCAATCTTTTGTCTCATTTTTGGAATG  250

seq1  CAAAAACATTAAATTAACAATTTTAATATTTTATACCAGCTGTAAACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACATTAAATTAACAATTTTAATATTTTATACCAGCTGTAAACAGA  300

seq1  AGTTAGATTCAACATCTCAAATTGAATTTTTGGAATGTATAATTGTAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGATTCAACATCTCAAATTGAATTTTTGGAATGTATAATTGTAGCA  350

seq1  TTAAAAGAATGAAACTTTATTTTTTTTTACTCTATCCTGATACTTGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGAATGAAACTTTATTTTTTTTTACTCTATCCTGATACTTGAAAA  400

seq1  GGAAAATGAATATAATCCCAACAAAGGTACAAAGTCAAGTGTGGGGATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATGAATATAATCCCAACAAAGGTACAAAGTCAAGTGTGGGGATGA  450

seq1  GGTGATCTTGGGTTTTATGGTGAGTGTTGTGCCAGTCTGTACTACCCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATCTTGGGTTTTATGGTGAGTGTTGTGCCAGTCTGTACTACCCAGT  500

seq1  GAGACTCCTCATCAAGACAACACATTTAAAAAGGAAGAGAAAAAATAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCCTCATCAAGACAACACATTTAAAAAGGAAGAGAAAAAATAAAT  550

seq1  CCATGAAGTTTTCAAGCATGTTGTATTCTTTATGTGAATTTATAAGAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAAGTTTTCAAGCATGTTGTATTCTTTATGTGAATTTATAAGAATC  600

seq1  AATTGAGAAGTTAGATTTTATCAGATGCAAGTGCAATTTTTTTATTCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAGAAGTTAGATTTTATCAGATGCAAGTGCAATTTTTTTATTCTAA  650

seq1  TACAATGTTAGTATGTTTTCAAGTTAATTCTTTCATGTTATATAAGTAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGTTAGTATGTTTTCAAGTTAATTCTTTCATGTTATATAAGTAAC  700

seq1  AGATATTGTGAAAAATTAGAGGAAGACAAATTTCTGTTCAAGACAAATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTGTGAAAAATTAGAGGAAGACAAATTTCTGTTCAAGACAAATTA  750

seq1  GAGGTTGGTAAGAATTATGACTGCACCATAATCTAATATGTTCCCTCAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTGGTAAGAATTATGACTGCACCATAATCTAATATGTTCCCTCAAT  800

seq1  AGTAAGCCCACTCCCTACTAGAGAAAACGTCAAGGTGTATTCAGTGTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGCCCACTCCCTACTAGAGAAAACGTCAAGGTGTATTCAGTGTTTA  850

seq1  AGATCATTTGTGGGTCCCCTGAATGCCATTAAAATCAAAATATTCTGCCT  900
      ||||||||||||||||||||||||| |||||||||| |||||||||||||
seq2  AGATCATTTGTGGGTCCCCTGAATG-CATTAAAATC-AAATATTCTGCCT  898

seq1  GGCATTCAGGCCCTTTGTGAAAGACTTTCTCTATCAATCTGCATTTATTT  950
      |||||||| |||||||||| ||||||||||||||||||||||| ||||||
seq2  GGCATTCATGCCCTTTGTGGAAGACTTTCTCTATCAATCTGCA-TTATTT  947

seq1  CCCAAGTCAG-AGCCTCTACAGTAGACAAATTCATATTTATGTGATTATT  999
      |||||||||| |||||||||||||||| |||||||| |||||||| ||||
seq2  CCCAAGTCAGAAGCCTCTACAGTAGAC-AATTCATA-TTATGTGA-TATT  994

seq1  TACATATTGTTTCTACCATAATTTATTTGATTATGATAATTTAAAGAACA  1049
      ||| |||   ||||||||||||||||| || ||||||||||||||| |||
seq2  TAC-TAT--GTTCTACCATAATTTATTCGA-TATGATAATTTAAAG-ACA  1039

seq1  CTTTATCTTTTCTTCCTTCCAAATATTAC-ATATCCAT-CAAAATAAAGT  1097
      ||||||| |||||||||| || ||||| | |||||||| ||| |||| | 
seq2  CTTTATC-TTTCTTCCTT-CAGATATTCCAATATCCATCCAATATAAGG-  1086

seq1  TTTGAACCAATTTGTTTTTCAAAGCCTCCTCT-GATGCAATCTATCAAGA  1146
       ||||| ||||||||||||| |||||||  || || |  ||||||| |||
seq2  -TTGAA-CAATTTGTTTTTC-AAGCCTCTCCTCGAAGTCATCTATC-AGA  1132

seq1  TTTTTCTTC  1155
       ||||||||
seq2  -TTTTCTTC  1140

seq1: chr6_139011167_139012290
seq2: B6Ng01-080D16.g_75_1199 (reverse)

seq1  CTTCT-AGAATAAGACAATATGCTTTCTCTC-CTTACTGACCTAATTCCC  48
      ||||| ||||||||| |  |||||||||||| ||||||||||||||||||
seq2  CTTCTCAGAATAAGA-ACAATGCTTTCTCTCTCTTACTGACCTAATTCCC  49

seq1  TA-GTAACCATATTGGAAATGTGCATGGGCTACAAAACTAAAGATTAACT  97
      || ||||||||||||| |||  ||||||||||||||||||||||||||||
seq2  TAGGTAACCATATTGGGAATTGGCATGGGCTACAAAACTAAAGATTAACT  99

seq1  GTCCAGGGACC-TGATTCCTGGAGCTTATTTGAAGATTAAATCAAATGGC  146
      ||||||||||| |||||||||||||||| |||||||||||||||||||||
seq2  GTCCAGGGACCTTGATTCCTGGAGCTTA-TTGAAGATTAAATCAAATGGC  148

seq1  AGGCAATAT-ATATTTGGTAATACAGCTTTGATGCAGTTTTTTTTCCCAC  195
      |||| |||| ||||||||||||||||||||||||||| ||||||||||||
seq2  AGGC-ATATAATATTTGGTAATACAGCTTTGATGCAG-TTTTTTTCCCAC  196

seq1  ATAGTATAAGTGCAATAAGAGGCAATGGCACTTTAGAGCTGTTTCAAAAA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATAAGTGCAATAAGAGGCAATGGCACTTTAGAGCTGTTTCAAAAA  246

seq1  ATAAAAGATTTTTTTTCTTAGTGTGAAATAATTTGGTACTATGCTGAAAC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGATTTTTTTTCTTAGTGTGAAATAATTTGGTACTATGCTGAAAC  296

seq1  GAGAATGAATAATTTATTTCTCTGTAACCAACAGCATCTTCTGCTTTTGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGAATAATTTATTTCTCTGTAACCAACAGCATCTTCTGCTTTTGA  346

seq1  AACACACAATAAAGGATCTCTAATTACAAATTTTCCATAATTACAAATTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACAATAAAGGATCTCTAATTACAAATTTTCCATAATTACAAATTG  396

seq1  TTCAGGCTTTTAAAAGGTGATTATTATCCATTATCTATTTACTTCATAAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCTTTTAAAAGGTGATTATTATCCATTATCTATTTACTTCATAAC  446

seq1  AAATGACACAGACGGTGTTAAAGATGAGTTTAAAATGCCAACTGAGAGGC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACACAGACGGTGTTAAAGATGAGTTTAAAATGCCAACTGAGAGGC  496

seq1  TGCAACATTTTAATTAAATAGAAAACAGCTCAAATATATATTTAACAACA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACATTTTAATTAAATAGAAAACAGCTCAAATATATATTTAACAACA  546

seq1  TAGCTTTTAGACCAAACATTAGTAAATGGATTTTTCTTTAGGAAATCAGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTTAGACCAAACATTAGTAAATGGATTTTTCTTTAGGAAATCAGA  596

seq1  GGAAGATAAATGAAGATGTTCTGTGCTTAAAAATACTATATTTAGAATGC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATAAATGAAGATGTTCTGTGCTTAAAAATACTATATTTAGAATGC  646

seq1  TACCACCGAGAGAGTGAAACGTGGTTTGTCCCCACAGCAGACATGAGAGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACCGAGAGAGTGAAACGTGGTTTGTCCCCACAGCAGACATGAGAGG  696

seq1  AACAAGTGACATTCTTACATAAAATCCATATTGGTGATGTATTTAATTAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTGACATTCTTACATAAAATCCATATTGGTGATGTATTTAATTAC  746

seq1  AGAGCTGATTGAAATTGACAGCCTCAGTGACCCGAGTTTGCACTTGTGAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGATTGAAATTGACAGCCTCAGTGACCCGAGTTTGCACTTGTGAT  796

seq1  TGATGGGTGATTCCACACTGGCTACTTTCAAACCAATTCACATAGTGCTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGTGATTCCACACTGGCTACTTTCAAACCAATTCACATAGTGCTC  846

seq1  AATACCATAACATCATTCTGTCAAATCACAAGCTACGTTTTTATAAGTAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCATAACATCATTCTGTCAAATCACAAGCTACGTTTTTATAAGTAT  896

seq1  GGCGTTTGAAGGGTGTGAATGTTTAATTAAAAAGAGATGGAGAGAAACTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTTTGAAGGGTGTGAATGTTTAATTAAAAAGAGATGGAGAGAAACTG  946

seq1  CATAAAAACATCTATACAAGTGCTAAACAGGGAGACTGTTCCTAGAAAGC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAACATCTATACAAGTGCTAAACAGGGAGACTGTTCCTAGAAAGC  996

seq1  AATGCTAACAGCAGTCAATGCACTCAGACATTGCCTCTCCACGAGTCTTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTAACAGCAGTCAATGCACTCAGACATTGCCTCTCCACGAGTCTTC  1046

seq1  TGTGCTCTTTGAGAATGTATCCTTGAAGGCTGTTCTTGGTTAAAAAAGAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCTTTGAGAATGTATCCTTGAAGGCTGTTCTTGGTTAAAAAAGAA  1096

seq1  GAAGCAGACTCAGATATTGAATTGCAACA  1124
      |||||||||||||||||||||||||||||
seq2  GAAGCAGACTCAGATATTGAATTGCAACA  1125