BAC Information

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BAC

Clone NameB6Ng01-080H15
Chromosome6 (Build37)
Map Location 109,177,114 - 109,178,288
singlet/doubletsinglet
Overlap genenone
Upstream geneItpr1, LOC677205, Bhlhb2, Arl8b, Edem1, EG627371, LOC639110
Downstream geneLOC100043720
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080H15.bB6Ng01-080H15.g
ACCDH895605DH895606
length1,1641,172
definitionDH895605|Mus musculus domesticus DNA, BAC clone: B6Ng01-080H15, 5' end.DH895606|Mus musculus domesticus DNA, BAC clone: B6Ng01-080H15, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtgttgttttccagtggggagtattatatgcaggtagagacaa
agattagtgcaacctaagtgattattggggatttatcatgaaaaagaatg
agcttagaaagctatgtgaggatggggccacgtgtaggtttgtttatgtg
cctgcactggcaccagattttaaagggaaatgttcaatcaaagagctttc
tgggaaggagaggaacagagaggatgggattgaaacaaccttgcttgagg
aaaggttgtttgttctgtgaagggagggcaaagagcagtatggacatgat
gtgccgttagaatgtgatgcatagttgggtaccataagaagtaactgact
cttcttgggaagcatctctttataagtttgggacctgggatagatcgaat
gtatatcctagtttgtcccttacctctctttgaccctcatctctccactt
catttcccttgtcggttaaagtgatataatcccaatcctatcatagtctt
gatgttagaatttattgaggtgacacataagaaactctgatcagattacc
tatagcagcataaatgcccagtcaacaaaagtggttatcagtgttattga
taattgtagtttcacagtacaaaaggaaacatgtcaagagagttgattaa
gttggtaagtgtgtactgagccatcagctccatggacagtatccttagga
ataggatcaccactctgtcaatagctacatgatttctcatagggtgacag
acagagctaaaggaatccatccctgccccagcttgtcctgcctatgtcta
gaatctgactgactactccacagaccctttgcttgtacctggcctcttgc
cagcaacattgtacaagtataatcgtctccaaacagaatttccctgctgc
tactcttgttctggaagtttgctgttcttgcagtagccagagggctcatg
tctaagtaaatttagtcatggaacgaactcctaccttctaagtatcctcc
aattgaattttcatttgagctttgggacctgaatcccagctcttccttgc
tgcctgtgagatcctaaaggatccccactgtattttcttcttccttacct
cactccttactggcccctggcatattgactgtataaaatgccattcttca
ttctggcttcgaaa
gaattctcatctgaggaataccaaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcacatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttctacaaccactctggaaatcagtctggcggttcctca
gaaaattgaacatagtactaccggaggattcctcaatacctctcctgggc
atatatccagaaaatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggaggtcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtacgcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtatggacactatgcccctccttagaaatgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aagtatggaccatgtagagactgccatatccagggatccaccccatattc
agcatccaaacgctgacaccatttgcatacactagctagattttatcgaa
aggacccagatgtagatgtctcttgtgagactatgccggggcctagaaaa
cacagaagtggatgctcacagtcagctaatggatggatcacagggttcca
aatggaggagctagaggagtacccaagagattaaggatctgcacccttat
agtggacacattataaactaaccagtaccctgagctctttgactctagct
gcaaattgtttcaaagaatgctagttcagccatcactgaaagaagagccc
atgacacgcaaacttatgtccagttacaggggacgtcatgccaaatggga
gagtggtgtgtgtaagtgatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_109177114_109178288
seq2: B6Ng01-080H15.b_45_1208

seq1  GAATTCTGTGTTGTTTTCCAGTGGGGAGTATTATATGCAGGTAGAGACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTTGTTTTCCAGTGGGGAGTATTATATGCAGGTAGAGACAA  50

seq1  AGATTAGTGCAACCTAAGTGATTATTGGGGATTTATCATGAAAAAGAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAGTGCAACCTAAGTGATTATTGGGGATTTATCATGAAAAAGAATG  100

seq1  AGCTTAGAAAGCTATGTGAGGATGGGGCCACGTGTAGGTTTGTTTATGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGAAAGCTATGTGAGGATGGGGCCACGTGTAGGTTTGTTTATGTG  150

seq1  CCTGCACTGGCACCAGATTTTAAAGGGAAATGTTCAATCAAAGAGCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCACTGGCACCAGATTTTAAAGGGAAATGTTCAATCAAAGAGCTTTC  200

seq1  TGGGAAGGAGAGGAACAGAGAGGATGGGATTGAAACAACCTTGCTTGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGGAGAGGAACAGAGAGGATGGGATTGAAACAACCTTGCTTGAGG  250

seq1  AAAGGTTGTTTGTTCTGTGAAGGGAGGGCAAAGAGCAGTATGGACATGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTGTTTGTTCTGTGAAGGGAGGGCAAAGAGCAGTATGGACATGAT  300

seq1  GTGCCGTTAGAATGTGATGCATAGTTGGGTACCATAAGAAGTAACTGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCGTTAGAATGTGATGCATAGTTGGGTACCATAAGAAGTAACTGACT  350

seq1  CTTCTTGGGAAGCATCTCTTTATAAGTTTGGGACCTGGGATAGATCGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGGGAAGCATCTCTTTATAAGTTTGGGACCTGGGATAGATCGAAT  400

seq1  GTATATCCTAGTTTGTCCCTTACCTCTCTTTGACCCTCATCTCTCCACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATCCTAGTTTGTCCCTTACCTCTCTTTGACCCTCATCTCTCCACTT  450

seq1  CATTTCCCTTGTCGGTTAAAGTGATATAATCCCAATCCTATCATAGTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCCTTGTCGGTTAAAGTGATATAATCCCAATCCTATCATAGTCTT  500

seq1  GATGTTAGAATTTATTGAGGTGACACATAAGAAACTCTGATCAGATTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTAGAATTTATTGAGGTGACACATAAGAAACTCTGATCAGATTACC  550

seq1  TATAGCAGCATAAATGCCCAGTCAACAAAAGTGGTTATCAGTGTTATTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCAGCATAAATGCCCAGTCAACAAAAGTGGTTATCAGTGTTATTGA  600

seq1  TAATTGTAGTTTCACAGTACAAAAGGAAACATGTCAAGAGAGTTGATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTAGTTTCACAGTACAAAAGGAAACATGTCAAGAGAGTTGATTAA  650

seq1  GTTGGTAAGTGTGTACTGAGCCATCAGCTCCATGGACAGTATCCTTAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTAAGTGTGTACTGAGCCATCAGCTCCATGGACAGTATCCTTAGGA  700

seq1  ATAGGATCACCACTCTGTCAATAGCTACATGATTTCTCATAGGGTGACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATCACCACTCTGTCAATAGCTACATGATTTCTCATAGGGTGACAG  750

seq1  ACAGAGCTAAAGGAATCCATCCCTGCCCCAGCTTGTCCTGCCTATGTCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCTAAAGGAATCCATCCCTGCCCCAGCTTGTCCTGCCTATGTCTA  800

seq1  GAATCTGACTGACTACTCCACAGACCCTTTGCTTGTACCTGGCCTCTTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGACTGACTACTCCACAGACCCTTTGCTTGTACCTGGCCTCTTGC  850

seq1  CAGCAACATTGTACAAGTATAATCGTCTCCAAACAGAATTTCCCTGCTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACATTGTACAAGTATAATCGTCTCCAAACAGAATTTCCCTGCTGC  900

seq1  TACTCTTGTTCTGGAAGTTTGCTGTTCTTGCAGTAGCCAGAGGGCTCATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTGTTCTGGAAGTTTGCTGTTCTTGCAGTAGCCAGAGGGCTCATG  950

seq1  TCTAAGTAAATTTAGTCATGGAACGAACTCCTACCTTCTAAGTATCCTCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTAAATTTAGTCATGGAACGAACTCCTACCTTCTAAGTATCCTCC  1000

seq1  AATTGGATTTTTCATTTTGAGCTTTTGGACCTGAATCCCAGCTCTTCCTT  1050
      |||| || |||||| |||||||||| ||||||||||||||||||||||||
seq2  AATT-GAATTTTCA-TTTGAGCTTTGGGACCTGAATCCCAGCTCTTCCTT  1048

seq1  GCTGCCTGTGAGATCCTAAAGGATCCTCACCTGTATTTTCTTCTTCTCTA  1100
      |||||||||||||||||||||||||| || |||||||||||||||| || 
seq2  GCTGCCTGTGAGATCCTAAAGGATCCCCA-CTGTATTTTCTTCTTC-CTT  1096

seq1  ACCTCACTCCCCTTTACT-GCCTCTTGCATATGAACTGTAATTAAAAAAT  1149
      ||||||||||   ||||| ||| || ||||||  ||||    || |||||
seq2  ACCTCACTCC---TTACTGGCCCCTGGCATATTGACTG----TATAAAAT  1139

seq1  GGCATTCTTCATTCTGGCTTCAGAAA  1175
      | ||||||||||||||||||| ||||
seq2  GCCATTCTTCATTCTGGCTTC-GAAA  1164