BAC Information

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BAC

Clone NameB6Ng01-082E18
Chromosome6 (Build37)
Map Location 135,945,406 - 136,070,315
singlet/doubletdoublet
Overlap geneGrin2b
Upstream geneDdx47, Gprc5a, Gprc5d, LOC100043668, Hebp1, 8430419L09Rik, Gsg1, Pbp2, LOC100043890, Emp1
Downstream geneEG668137, LOC545887, E330021D16Rik, EG627022, LOC100043893, Atf7ip, 1100001H23Rik, LOC100043894, Gucy2c, Hist4h4, H2afj, Wbp11, BC049715, C030030A07Rik, Art4, Mgp, Erp27, Arhgdib, Pde6h, Rerg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082E18.bB6Ng01-082E18.g
ACCDH896890DH896891
length1,2031,118
definitionDH896890|Mus musculus domesticus DNA, BAC clone: B6Ng01-082E18, 5' end.DH896891|Mus musculus domesticus DNA, BAC clone: B6Ng01-082E18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,945,406 - 135,946,625)(136,069,191 - 136,070,315)
sequence
gaattctcttctgcctgccttactgagcactgtaaaatggaaagcaaagc
cagggtcggtcagaggcaggcaggacagagtgagatgacacaggagttct
gaattattcattttgatttatgtctcatagtggcaattgttgccactttc
tgttgtttctcctgaatgttgaaattgtaaaaagaggactgaataattcg
gcatgactcaagaaggcagccagtgctggcaaaataggttccttttgtgt
ttagtctgaacattcgtatgatatattggtttgtaatttaattaacaatc
tatgatggccctaatgagtatggtgatatttgcaaagcatttcagtgttc
agtgaaaaagctgaatggtccgaccccctttattcttatcaaaaaacagg
aaggaaggaggacccagtggcttggagacaggagcatggctgaattcaag
gctgtttctgggagacatcagagttcacccattccaaaatccatagctgc
tgcttccacatctgtgctgtctaagcatcttgcctaagctctcttggaat
cacaaaatccatttgttcctcttaaagtgcttcacagggcacaaacacac
tgtttaaagggcgcaggtaaaacacaagggagcagttcagtgtggaggca
ttcagtagttctagggagaggacactcattgccttgtgattgccagccac
tagggctggggatgtctcagccgtgccacacaagcatgaatccctaagtt
ccatctcccagaacccacaatcaaaaggcagacctagcacatgcacctga
aatcctagtgctggggaatgggagacagggccatccctgagctcaccagc
cagtttagcacaactgatgagctccggattcagtgggagaccccgtttca
aacatatggtaaagagtgactgagggagatgcttaaactcaacttctggt
ctacacacacacacacacacacacacaccacacacaccactcgatcacac
ttgatcacagcatcacttagtgtccctccaagagtatgcacatagagcta
ctcggcatcccagaccgcattactgccactgccagcatggaaaaatacat
ccatcttgaacacctgtagaggtgaagtggaccatgtgtcaatctgagtt
catgtgtgggaacttaagccgtggaactcactggcttggtggacttggct
tgg
gaattctgttttagatggaatcgagataggcgtcattccaaactcagttc
ctttcaataaacaccaaatggctgttggatgataggctgtgttctagaat
aagcataatcacaaagattcccgagaggattttagagagtagaaaaccca
ataagggaagcagttgctacagcgtttaggtttgggaaatgctaggaagg
aatcagataaatgaatttgatctttgaatctgtgtgctgggtgatccccc
accgtgcattaagcagccgtttactgctgcttagtggggtggaaaacaga
caagagacatgctgctgcagatctgacagaaattaacacaatttgctgtt
agaaagttgctcaagtgaaataaaagagggaggagtcttttcaggtgatg
ttatctaggatgctctctaggaggaggtggcatttgtgtagatatctgat
ggattaaaaagtacatgccacaaggggatccgaagccctggggaatgctt
gaagacgggagcaagtttggtgtgttcaggggctttgagaatgtctttta
gggtttttctgctgcgaacagacaccatgaccaaggcaactcttataagg
gcaacatttaattgggactggcttacaggttcagagattcagtccattat
gatcaaggcaggagcatggcagcatccaggcaggcatgatgcaggcagag
ctcagagttttacatctttatctgaaggctgctagcagaatactggcttt
cacgcagctaggataagggtcttataaagcccacacataaatgacatatc
tactccaagaaggtcatactcctactccaacagaccataccctctaatac
tgccactcccagtgctgagcatataataaaacatcacagagagggtcatg
tgacaagagtgcacaagtcagggaacaagacagagacttggggtaggggg
acctagctgttagaaagcttggagttttgtgctaagtgggatcaagccta
gagcatattctcctacttagaaaaactaactaagctgttgctagtctgta
gggcaagaaaaagccaagtgctattcatagtcaagtgagagataaattgg
ggcagactgaatagtagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_135945406_135946625
seq2: B6Ng01-082E18.b_47_1249

seq1  GAATTCTCTTCTGCCTGCCTTACTGAGCACTGTAAAATGGAAAGCAAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCTGCCTGCCTTACTGAGCACTGTAAAATGGAAAGCAAAGC  50

seq1  CAGGGTCGGTCAGAGGCAGGCAGGACAGAGTGAGATGACACAGGAGTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCGGTCAGAGGCAGGCAGGACAGAGTGAGATGACACAGGAGTTCT  100

seq1  GAATTATTCATTTTGATTTATGTCTCATAGTGGCAATTGTTGCCACTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATTCATTTTGATTTATGTCTCATAGTGGCAATTGTTGCCACTTTC  150

seq1  TGTTGTTTCTCCTGAATGTTGAAATTGTAAAAAGAGGACTGAATAATTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTTCTCCTGAATGTTGAAATTGTAAAAAGAGGACTGAATAATTCG  200

seq1  GCATGACTCAAGAAGGCAGCCAGTGCTGGCAAAATAGGTTCCTTTTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGACTCAAGAAGGCAGCCAGTGCTGGCAAAATAGGTTCCTTTTGTGT  250

seq1  TTAGTCTGAACATTCGTATGATATATTGGTTTGTAATTTAATTAACAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTGAACATTCGTATGATATATTGGTTTGTAATTTAATTAACAATC  300

seq1  TATGATGGCCCTAATGAGTATGGTGATATTTGCAAAGCATTTCAGTGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGGCCCTAATGAGTATGGTGATATTTGCAAAGCATTTCAGTGTTC  350

seq1  AGTGAAAAAGCTGAATGGTCCGACCCCCTTTATTCTTATCAAAAAACAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAAAGCTGAATGGTCCGACCCCCTTTATTCTTATCAAAAAACAGG  400

seq1  AAGGAAGGAGGACCCAGTGGCTTGGAGACAGGAGCATGGCTGAATTCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAGGACCCAGTGGCTTGGAGACAGGAGCATGGCTGAATTCAAG  450

seq1  GCTGTTTCTGGGAGACATCAGAGTTCACCCATTCCAAAATCCATAGCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTCTGGGAGACATCAGAGTTCACCCATTCCAAAATCCATAGCTGC  500

seq1  TGCTTCCACATCTGTGCTGTCTAAGCATCTTGCCTAAGCTCTCTTGGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCACATCTGTGCTGTCTAAGCATCTTGCCTAAGCTCTCTTGGAAT  550

seq1  CACAAAATCCATTTGTTCCTCTTAAAGTGCTTCACAGGGCACAAACACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAATCCATTTGTTCCTCTTAAAGTGCTTCACAGGGCACAAACACAC  600

seq1  TGTTTAAAGGGCGCAGGTAAAACACAAGGGAGCAGTTCAGTGTGGAGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAAGGGCGCAGGTAAAACACAAGGGAGCAGTTCAGTGTGGAGGCA  650

seq1  TTCAGTAGTTCTAGGGAGAGGACACTCATTGCCTTGTGATTGCCAGCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTAGTTCTAGGGAGAGGACACTCATTGCCTTGTGATTGCCAGCCAC  700

seq1  TAGGGCTGGGGATGTCTCAGCCGTGCCACACAAGCATGAATCCCTAAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCTGGGGATGTCTCAGCCGTGCCACACAAGCATGAATCCCTAAGTT  750

seq1  CCATCTCCCAGAACCCACAATCAAAAGGCAGACCTAGCACATGCACCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCCCAGAACCCACAATCAAAAGGCAGACCTAGCACATGCACCTGA  800

seq1  AATCCTAGTGCTGGGGAATGGGAGACAGGGCCATCCCTGAGCTCACCAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTAGTGCTGGGGAATGGGAGACAGGGCCATCCCTGAGCTCACCAGC  850

seq1  CAGTTTAGCACAACTGATGAGCTCCGGATTCAGTGGGAGACCCCGTTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAGTTTAGCACAACTGATGAGCTCCGGATTCAGTGGGAGACCCCGTTTC-  899

seq1  AAACATATGGTAAAGAGTGACTGAGGGAGATGCTTAAACTCAACCTCTGG  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAACATATGGTAAAGAGTGACTGAGGGAGATGCTTAAACTCAACTTCTGG  949

seq1  TCTACACACACACACACACACACACACACACACACACACACACACGATCA  1000
      ||||||||||||||||||||||||||||| ||||||||| ||| ||||||
seq2  TCTACACACACACACACACACACACACAC-CACACACAC-CACTCGATCA  997

seq1  CACATGATCACCAGCCATCAACTTAGTGTCCCTCCACAGAGTATGCCACA  1050
      ||| |||||| ||| |||| |||||||||||||||| |||||||| ||| 
seq2  CACTTGATCA-CAG-CATC-ACTTAGTGTCCCTCCA-AGAGTATG-CAC-  1041

seq1  ATAGAGGCTACTCGGCATCCCCAGACGCGCATTACTGCCACACTGCACAG  1100
      ||||| |||||||||||| ||||||| |||||||||||  |||||| |||
seq2  ATAGA-GCTACTCGGCAT-CCCAGAC-CGCATTACTGC--CACTGC-CAG  1085

seq1  CCATGGAAGAATACATTCACTCCTTTGAAACACCCTGTAGGAGTGTGATG  1150
       ||||||| ||||||| || ||  ||| |||| |||||| ||| |||| |
seq2  -CATGGAAAAATACATCCA-TC--TTG-AACA-CCTGTA-GAG-GTGAAG  1127

seq1  -GGACGCAATGTGTCAATCTGAGTTTCATGTGTTGGAGCCTTAAGCC-TG  1198
       |||  | ||||||||||||||| ||||||||| |||  |||||||| ||
seq2  TGGA--CCATGTGTCAATCTGAG-TTCATGTGTGGGA-ACTTAAGCCGTG  1173

seq1  G-------TGACTT--CAGACTGTGGCTTGG  1220
      |       || |||    |||| ||||||||
seq2  GAACTCACTGGCTTGGTGGACT-TGGCTTGG  1203

seq1: chr6_136069191_136070315
seq2: B6Ng01-082E18.g_70_1187 (reverse)

seq1  CCTAC-ATTCATATCTGCCCCCAATCTACCTCTCACCTGGACTATGAAAT  49
      ||||| |||||  |||| ||||||| || |||||| || ||||||| |||
seq2  CCTACTATTCA-GTCTG-CCCCAATTTATCTCTCA-CTTGACTATG-AAT  46

seq1  AGCCACTTGGCTATTTCTTGCCCCTACAGACTAGCAACAGCTTAGTTAGT  99
      || ||||||||| ||||||| |||||||||||||||||||||||||||||
seq2  AG-CACTTGGCTTTTTCTTG-CCCTACAGACTAGCAACAGCTTAGTTAGT  94

seq1  TTTTCTAAGTAGGAGAATATGCTTCTAGGCTTGATCCCACTTAGCACAAA  149
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTTCTAAGTAGGAGAATATGC-TCTAGGCTTGATCCCACTTAGCACAAA  143

seq1  ACTCCAAGCTTTCTACCAGCCTAGGTCCCCCTACCCCAAGTCTCTGTCTT  199
      ||||||||||||||| ||| ||||||||||||||||||||||||||||||
seq2  ACTCCAAGCTTTCTAACAG-CTAGGTCCCCCTACCCCAAGTCTCTGTCTT  192

seq1  GTTCCCTGACTTGTTGCACTCTTGTCACATGACCCTCTCTGTGATGTTTT  249
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTGACTTG-TGCACTCTTGTCACATGACCCTCTCTGTGATGTTTT  241

seq1  A-TATATGCTCAGCACTGGGAGTGGCAGTATTAGAAGGTATGGTCTGTTG  298
      | ||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATTATATGCTCAGCACTGGGAGTGGCAGTATTAGAGGGTATGGTCTGTTG  291

seq1  GAGTAGGAGTATGACCTTCTTGGAGTAGATATGTCATTTATGTGTGGGCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGGAGTATGACCTTCTTGGAGTAGATATGTCATTTATGTGTGGGCT  341

seq1  TTATAAGACCCTTATCCTAGCTGCCTGAAAGCCAGTATTCTGCTAGCAGC  398
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTATAAGACCCTTATCCTAGCTGCGTGAAAGCCAGTATTCTGCTAGCAGC  391

seq1  CTTCAGATAAAGATGTAAAACTCTGAGCTCTGCCTGCATCATGCCTGCCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGATAAAGATGTAAAACTCTGAGCTCTGCCTGCATCATGCCTGCCT  441

seq1  GGATGCTGCCATGCTCCTGCCTTGATCATAATGGACTGAATCTCTGAACC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTGCCATGCTCCTGCCTTGATCATAATGGACTGAATCTCTGAACC  491

seq1  TGTAAGCCAGTCCCAATTAAATGTTGCCCTTATAAGAGTTGCCTTGGTCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCCAGTCCCAATTAAATGTTGCCCTTATAAGAGTTGCCTTGGTCA  541

seq1  TGGTGTCTGTTCGCAGCAGAAAAACCCTAAAAGACATTCTCAAAGCCCCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCTGTTCGCAGCAGAAAAACCCTAAAAGACATTCTCAAAGCCCCT  591

seq1  GAACACACCAAACTTGCTCCCGTCTTCAAGCATTCCCCAGGGCTTCGGAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACACCAAACTTGCTCCCGTCTTCAAGCATTCCCCAGGGCTTCGGAT  641

seq1  CCCCTTGTGGCATGTACTTTTTAATCCATCAGATATCTACACAAATGCCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTGTGGCATGTACTTTTTAATCCATCAGATATCTACACAAATGCCA  691

seq1  CCTCCTCCTAGAGAGCATCCTAGATAACATCACCTGAAAAGACTCCTCCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCTAGAGAGCATCCTAGATAACATCACCTGAAAAGACTCCTCCC  741

seq1  TCTTTTATTTCACTTGAGCAACTTTCTAACAGCAAATTGTGTTAATTTCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATTTCACTTGAGCAACTTTCTAACAGCAAATTGTGTTAATTTCT  791

seq1  GTCAGATCTGCAGCAGCATGTCTCTTGTCTGTTTTCCACCCCACTAAGCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGATCTGCAGCAGCATGTCTCTTGTCTGTTTTCCACCCCACTAAGCA  841

seq1  GCAGTAAACGGCTGCTTAATGCACGGTGGGGGATCACCCAGCACACAGAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAAACGGCTGCTTAATGCACGGTGGGGGATCACCCAGCACACAGAT  891

seq1  TCAAAGATCAAATTCATTTATCTGATTCCTTCCTAGCATTTCCCAAACCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGATCAAATTCATTTATCTGATTCCTTCCTAGCATTTCCCAAACCT  941

seq1  AAACGCTGTAGCAACTGCTTCCCTTATTGGGTTTTCTACTCTCTAAAATC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCTGTAGCAACTGCTTCCCTTATTGGGTTTTCTACTCTCTAAAATC  991

seq1  CTCTCGGGAATCTTTGTGATTATGCTTATTCTAGAACACAGCCTATCATC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCGGGAATCTTTGTGATTATGCTTATTCTAGAACACAGCCTATCATC  1041

seq1  CAACAGCCATTTGGTGTTTATTGAAAGGAACTGAGTTTGGAATGACGCCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCCATTTGGTGTTTATTGAAAGGAACTGAGTTTGGAATGACGCCT  1091

seq1  ATCTCGATTCCATCTAAAACAGAATTC  1125
      |||||||||||||||||||||||||||
seq2  ATCTCGATTCCATCTAAAACAGAATTC  1118