BAC Information

Click to search

BAC

Clone NameB6Ng01-082K15
Chromosome6 (Build37)
Map Location 121,672,131 - 121,840,124
singlet/doubletdoublet
Overlap geneEG640530, Mug1
Upstream geneCecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid, Mical3, LOC100043793, Minpp1-ps, Pex26, Tuba8, Usp18, Slc6a13, Slc6a12, Iqsec3, LOC100043486, A2m
Downstream geneMug4, Mug2, Mug-ps1, Klrg1, LOC625931, M6pr, Phc1, 1700063H04Rik, LOC677375, 4933426K21Rik, EG667035, Mfap5, Aicda, LOC667105, Apobec1, Gdf3, Dppa3, EG667107, LOC100043805, Nanog, LOC100038891, Slc2a3, LOC100043502, D530008I22, LOC100043505, Foxj2, C3ar1, Necap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082K15.bB6Ng01-082K15.g
ACCDH897152DH897153
length1,2181,089
definitionDH897152|Mus musculus domesticus DNA, BAC clone: B6Ng01-082K15, 5' end.DH897153|Mus musculus domesticus DNA, BAC clone: B6Ng01-082K15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,838,877 - 121,840,124)(121,672,131 - 121,672,974)
sequence
gaattcctgtcattaaataagttgattccctccctatgacatgctgctaa
ctaactaactaacaggctaactaactgatagggtttgaatctcaaatatc
tccataggctcatgtgtgtaaacacctaataatcagctgatggttccctt
gtccaggcaacagatcctgtcatagtgggggaagcatagtggctaggaat
gtttatgttcaaagatgcaaaagcttgggaaatggattcctcacaactca
taggtcaagaagcaaacagaacttggctggattagaattcttaagtttca
cccctactgccatgtaggacccaaattccaaaaatgttacatccttacag
aacagaaccagcttgggtctaaccaactgctcaaacacctgagcccactc
aggacattttacattcaatcactacacccttcattagataacttaacaaa
attatgattgaggtcttcaacatggcaccccaccggccagtcagcagagc
cattttcctggcactgaaagcctcttttttttctttgtaaaaagtttttt
tatttggatgtattacatcaaccacttcctttttgtgttagaaattgaat
ccacagcttgaaaatggtcaagtattttaccatcaaaccctaattcctgc
cttttgattttttaagacaaggtcttgttatgaagcccaggctcatttgg
tacttggaaagtagcctggatcacttttgaatttgtgactctcctacctc
atcccccagaaattctctgaatgcatgcatgaatcaccatttcttgcttg
cagtatagtcttgctacactattatacccatcatgattgccttatggaag
taaggttgccatggtgttaagcttcatgtttggagctctgtcttcttgaa
gaagttgtaaagtgtctcccatgttacaatgcatgctattttgtttaaat
tgtcatttctggcatcacaaatgtgaggctatcagcaacactaactgaca
tggagtaaatttggattaagtgagaaataatgacagatagagactcttcg
agactaggcattatttattcagcttgtcagtagttgtatttcagaggaca
acacacaatcaccatcttgagtcttgggtcttgggatttccagcaatgct
tgctaaaataggagattcaaacatggtgctggtaagaagagaaacaccat
gatgataatctacctggg
gaattcctacataactaagccttcgccagtgttccaacatcctagaaaat
gcttgaagcctaggagcttggaatagctcagggctagtctgcagagtgat
tacttagggcagtagccagtcttacccaaacacaatggcctagctaatag
gtgggtttaccatgaaagagttaggaaatcccactgaaacagagaccttc
actacaggcaggtatagcaggctacattgcatattagaagcaagttggta
aattcttctgacaaacggagattctccacagatacttaaaagttacattc
atacaagaatttatcagggcccaagaaataggggggttgtggtattgcat
tattcatgagagggtctgctagagcagaacccctggtgctagttttcaca
aggctcaaagaagtagcactaattgtaactagggtgtgaaatccttagct
gtcattaagctgaccctaggcaggactgctttatctttactgtaaatatt
tacctgattcctgtaagtccttttgaagtcattcctttgttttgtgtcag
gtaacttcaatgtactttgcctgctgtgacatcctactccctttattttc
tgtattatataagactggtgttcactttgtgacaatacattcagattcta
cacaatctcctgtgtgcatctgtttgtcatttgctgactccttgcccatc
tgcacccagagacctgtcctacgcagacaagggatccaagagggtctgca
gcaaataggtaaggtgttatgtacagcaaatataaaattattgtgactga
gtgaaaagtctaaataaatagaaagataataaataataaaagctagattt
aactgagatatttagattgaccataagggctgagcttctctgaatggatc
aatgctggggaaagttcagacttggatgtaatgctgtctagatgtaatgc
tgtcttaagcaattagtcaatctgggtcccttctgaagacatttggagaa
tgaggtgcaagcagctgctatccaaggctcagctcttgtggtgggaaggg
ctcctagccagttcccctaaagggggggcatggttctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_121838877_121840124
seq2: B6Ng01-082K15.b_48_1265 (reverse)

seq1  CCCAGGTAGATTATACTCATCATATGTGTTGTTTTCTTCTATCCCCATAC  50
      |||||||||||||   |||||||  ||||  || ||||||       |||
seq2  CCCAGGTAGATTA---TCATCAT-GGTGT--TTCTCTTCT-------TAC  37

seq1  ACAGACAAACAAAATGTTTGAAACTCCTATTTGTAGACAAGGCATTGCTG  100
       |||     ||  ||||||||| ||||||||| ||| ||| |||||||||
seq2  -CAG-----CACCATGTTTGAATCTCCTATTT-TAG-CAA-GCATTGCTG  78

seq1  G-AATCCCCAGACCCAGGAACCTTCAAGATGGTGATT-TGTGTTTGTCTC  148
      | |||||| ||||||| ||    |||||||||||||| ||||||   |||
seq2  GAAATCCCAAGACCCAAGA---CTCAAGATGGTGATTGTGTGTTGTCCTC  125

seq1  TGAAATACAACTACTGAACAAGCTTGATAAATAAATGCCTAGTCCTCG-A  197
      |||||||||||||||| |||||||  |||||| |||||||||| |||| |
seq2  TGAAATACAACTACTG-ACAAGCTGAATAAAT-AATGCCTAGT-CTCGAA  172

seq1  GAGTCTCTATCTGTCATTATTTCTTCACTTAATCCAAATTTACTCCATGT  247
      ||||||||||||||||||||||| ||||||||||||||||||||||||| 
seq2  GAGTCTCTATCTGTCATTATTTC-TCACTTAATCCAAATTTACTCCATG-  220

seq1  TCAGTTAGTGTTTGCCTGATAGCCTCACATTTGTGATGCCAGAAATGAC-  296
      ||||||||||||   |||||||||||||||||||||||||||||||||| 
seq2  TCAGTTAGTGTT--GCTGATAGCCTCACATTTGTGATGCCAGAAATGACA  268

seq1  ATTTAAACAAAAATAGCATGCATTGTAAACATGGGAGACACTTTACAACT  346
      |||||||| ||||||||||||||||| |||||||||||||||||||||||
seq2  ATTTAAAC-AAAATAGCATGCATTGT-AACATGGGAGACACTTTACAACT  316

seq1  TCTTCAAGAAGACAGAGCTCCAAACATGAAGCTTAACACCATGGCAACCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAAGAAGACAGAGCTCCAAACATGAAGCTTAACACCATGGCAACCT  366

seq1  TACTTCCATAAGGCAATCATGATGGGTATAATAGTGTAGCAAGACTATAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCCATAAGGCAATCATGATGGGTATAATAGTGTAGCAAGACTATAC  416

seq1  TGCAAGCAAGAAATGGTGATTCATGCATGCATTCAGAGAATTTCTGGGGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGCAAGAAATGGTGATTCATGCATGCATTCAGAGAATTTCTGGGGG  466

seq1  ATGAGGTAGGAGAGTCACAAATTCAAAAGTGATCCAGGCTACTTTCCAAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTAGGAGAGTCACAAATTCAAAAGTGATCCAGGCTACTTTCCAAG  516

seq1  TACCAAATGAGCCTGGGCTTCATAACAAGACCTTGTCTTAAAAAATCAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAATGAGCCTGGGCTTCATAACAAGACCTTGTCTTAAAAAATCAAA  566

seq1  AGGCAGGAATTAGGGTTTGATGGTAAAATACTTGACCATTTTCAAGCTGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGAATTAGGGTTTGATGGTAAAATACTTGACCATTTTCAAGCTGT  616

seq1  GGATTCAATTTCTAACACAAAAAGGAAGTGGTTGATGTAATACATCCAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCAATTTCTAACACAAAAAGGAAGTGGTTGATGTAATACATCCAAA  666

seq1  TAAAAAAACTTTTTACAAAGAAAAAAAAGAGGCTTTCAGTGCCAGGAAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAACTTTTTACAAAGAAAAAAAAGAGGCTTTCAGTGCCAGGAAAA  716

seq1  TGGCTCTGCTGACTGGCCGGTGGGGTGCCATGTTGAAGACCTCAATCATA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTGCTGACTGGCCGGTGGGGTGCCATGTTGAAGACCTCAATCATA  766

seq1  ATTTTGTTAAGTTATCTAATGAAGGGTGTAGTGATTGAATGTAAAATGTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTAAGTTATCTAATGAAGGGTGTAGTGATTGAATGTAAAATGTC  816

seq1  CTGAGTGGGCTCAGGTGTTTGAGCAGTTGGTTAGACCCAAGCTGGTTCTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGGGCTCAGGTGTTTGAGCAGTTGGTTAGACCCAAGCTGGTTCTG  866

seq1  TTCTGTAAGGATGTAACATTTTTGGAATTTGGGTCCTACATGGCAGTAGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAAGGATGTAACATTTTTGGAATTTGGGTCCTACATGGCAGTAGG  916

seq1  GGTGAAACTTAAGAATTCTAATCCAGCCAAGTTCTGTTTGCTTCTTGACC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAACTTAAGAATTCTAATCCAGCCAAGTTCTGTTTGCTTCTTGACC  966

seq1  TATGAGTTGTGAGGAATCCATTTCCCAAGCTTTTGCATCTTTGAACATAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTTGTGAGGAATCCATTTCCCAAGCTTTTGCATCTTTGAACATAA  1016

seq1  ACATTCCTAGCCACTATGCTTCCCCCACTATGACAGGATCTGTTGCCTGG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCTAGCCACTATGCTTCCCCCACTATGACAGGATCTGTTGCCTGG  1066

seq1  ACAAGGGAACCATCAGCTGATTATTAGGTGTTTACACACATGAGCCTATG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGAACCATCAGCTGATTATTAGGTGTTTACACACATGAGCCTATG  1116

seq1  GAGATATTTGAGATTCAAACCCTATCAGTTAGTTAGCCTGTTAGTTAGTT  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATATTTGAGATTCAAACCCTATCAGTTAGTTAGCCTGTTAGTTAGTT  1166

seq1  AGTTAGCAGCATGTCATAGGGAGGGAATCAACTTATTTAATGACAGGAAT  1246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGCAGCATGTCATAGGGAGGGAATCAACTTATTTAATGACAGGAAT  1216

seq1  TC  1248
      ||
seq2  TC  1218

seq1: chr6_121672131_121672974
seq2: B6Ng01-082K15.g_324_1159

seq1  TCTTCTGACAAACGGAGATTCTCCACAGATACTTAAAAGTTACATTCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGACAAACGGAGATTCTCCACAGATACTTAAAAGTTACATTCATA  50

seq1  CAAGAATTTATCAGGGCCCAAGAAATAGGGGGGTTGTGGTATTGCATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATTTATCAGGGCCCAAGAAATAGGGGGGTTGTGGTATTGCATTAT  100

seq1  TCATGAGAGGGTCTGCTAGAGCAGAACCCCTGGTGCTAGTTTTCACAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGAGGGTCTGCTAGAGCAGAACCCCTGGTGCTAGTTTTCACAAGG  150

seq1  CTCAAAGAAGTAGCACTAATTGTAACTAGGGTGTGAAATCCTTAGCTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGAAGTAGCACTAATTGTAACTAGGGTGTGAAATCCTTAGCTGTC  200

seq1  ATTAAGCTGACCCTAGGCAGGACTGCTTTATCTTTACTGTAAATATTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGCTGACCCTAGGCAGGACTGCTTTATCTTTACTGTAAATATTTAC  250

seq1  CTGATTCCTGTAAGTCCTTTTGAAGTCATTCCTTTGTTTTGTGTCAGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCCTGTAAGTCCTTTTGAAGTCATTCCTTTGTTTTGTGTCAGGTA  300

seq1  ACTTCAATGTACTTTGCCTGCTGTGACATCCTACTCCCTTTATTTTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAATGTACTTTGCCTGCTGTGACATCCTACTCCCTTTATTTTCTGT  350

seq1  ATTATATAAGACTGGTGTTCACTTTGTGACAATACATTCAGATTCTACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATAAGACTGGTGTTCACTTTGTGACAATACATTCAGATTCTACAC  400

seq1  AATCTCCTGTGTGCATCTGTTTGTCATTTGCTGACTCCTTGCCCATCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCCTGTGTGCATCTGTTTGTCATTTGCTGACTCCTTGCCCATCTGC  450

seq1  ACCCAGAGACCTGTCCTACGCAGACAAGGGATCCAAGAGGGTCTGCAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGAGACCTGTCCTACGCAGACAAGGGATCCAAGAGGGTCTGCAGCA  500

seq1  AATAGGTAAGGTGTTATGTACAGCAAATATAAAATTATTGTGACTGAAGT  550
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AATAGGTAAGGTGTTATGTACAGCAAATATAAAATTATTGTGACTG-AGT  549

seq1  GAAAAGTCTAAATAAATAGAAAGATAATAAATAATAAAAGCTAGATTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTCTAAATAAATAGAAAGATAATAAATAATAAAAGCTAGATTTAA  599

seq1  CTGAGATATTTAGATTGACCATAAGGGCTGAGCCTCTCTGAATGGATCAA  650
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTGAGATATTTAGATTGACCATAAGGGCTGAGCTTCTCTGAATGGATCAA  649

seq1  TGCTGGGGAAAGTTCAGACTTGGATGTAATGCTGTCTAGATGTAATGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGGAAAGTTCAGACTTGGATGTAATGCTGTCTAGATGTAATGCTG  699

seq1  TCTTAAGCAATTAGTTCAAATCCTGGGCCCCTCTGAAAGACCATTTGGAG  750
      |||||||||||||||   ||||  || ||| |||| |||| |||||||||
seq2  TCTTAAGCAATTAGT--CAATCTGGGTCCCTTCTG-AAGA-CATTTGGAG  745

seq1  ATAGAGGGTAGCAAGCAGCTGCCTACCAAGGCTCAGCTCTTGTGTGTGGA  800
      |  ||||   ||||||||||||   ||||||||||||||||||| |||| 
seq2  AATGAGG--TGCAAGCAGCTGCTATCCAAGGCTCAGCTCTTGTG-GTGGG  792

seq1  AGGTGCTCCTAGGCAGTTACACCTAAAGAGGGGGCAT-GTTCTGA  844
      | | |||||||| ||||| | ||||||| |||||||| |||||||
seq2  AAGGGCTCCTAGCCAGTT-CCCCTAAAGGGGGGGCATGGTTCTGA  836