BAC Information

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BAC

Clone NameB6Ng01-082O06
Chromosome6 (Build37)
Map Location 38,867,802 - 38,958,015
singlet/doubletdoublet
Overlap geneTbxas1
Upstream geneTrim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180, Hipk2
Downstream gene1700025N23Rik, Parp12, 4930599N23Rik, A630082K20Rik, Slc37a3, Rab19, Mkrn1, ENSMUSG00000068601, Dennd2a, Adck2, Ndufb2, Braf, Fth-ps2, Mrps33, LOC665247, LOC665254
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082O06.bB6Ng01-082O06.g
ACCDH897311DH897312
length5551,086
definitionDH897311|Mus musculus domesticus DNA, BAC clone: B6Ng01-082O06, 5' end.DH897312|Mus musculus domesticus DNA, BAC clone: B6Ng01-082O06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,867,802 - 38,868,354)(38,956,920 - 38,958,015)
sequence
ggaattcagtcacatctgaggttgttccttccctgagcatggccataaac
ctgccgttgctccagtagcactagctgtcactctgcatggtagctcctta
atttgagcagactatctgaccctgtggaggagaagcctactctgagagag
gagaaagaaagatgggggggggtagttgaggaaaagaacaaggctcgtgg
gtcttaccgtagtacttaaagcgcagaaaggttttcccacctccaggcct
ccacccatgctctctttctgcttctcctgcagctctctacaggacaaact
gctttctcacaggcaaatctcagtgatggctttcctccctagagtcttcc
ccactatacctcctagcaggccatcccacaggctgtccccgaagctccgt
tttgagaaccttcacagcactgttctgcactggtaattattccttcgttt
gtagactgtatatccatctgcaaagaatcttctccagggttgggggccag
catcattttgtgagtatggcggatgctgatcccatatacactctatgaat
ggccg
gaattccatgatgatggaacctggttatttctgtgttcaaataatttcat
gaaagtagaactaaggatgtcaaacaatctaattcctgttgctttctcac
ccaaaccaggtgccacagtgcctccgcccctcagtatatctactcttagg
ttataaccccactctccgcaggtctgatagcatgaactcaaggaggaaaa
agccaaaacaactcagcatttaaaagcctttggatgtctggaagtttgga
gaacaatggctcactgagtgttggaggaaaagcatttcccgttcagagaa
tggtaaaggaaggctctcttgagttacatgatgctgttaaagttatatga
gccccacatgttgatggtgtatagctaagccagttgtttattggtgtgtg
aagaaagactaagaaattaaccagaggtatgcttgcggttctcatctgct
ccagaaggatttgcctcatgtatctggggacatctgaccccttgaaggtt
aaacagcaaaatggagtgctctctccctccagagagttctgagcaagtca
ctcctccacttctgagcatttaacagttggctgcctctgacacggggcag
cggcctctgcgagcctcaacccacttctgcaatccttttcccctgcttcc
tctcttgcgcactctgtttcagcctgagtgagctccccatactgcaagca
agccctgtattgctctgtctaggtgcctgtgtacctaccttataaccctt
cccctgcccaaacctaacatcagtgttcttcaaaacaagacaggagctct
gtcaccgccctcccttccttggtctttatgcagtatttatgtatcatgct
gcactaccacactagaacattcgtaaaggcagaaatcaacacatgtaaga
aaactgacatttcttctgtttggtgccatagtttgaatcttggactatcc
ccaaaggttttttgctaaaagttggtctgctcttggggctggggggaacc
ttgcagttattgggatgtgctttgaaggggtccatggcttctgcgcttcc
ctgtcttccttttcacttctgctccagcagagagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_38867802_38868354
seq2: B6Ng01-082O06.b_51_604

seq1  GAATTCAGTCACATCTGAGGTTGTTCCTTCCCTGAGCATGGCCATAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCACATCTGAGGTTGTTCCTTCCCTGAGCATGGCCATAAACC  50

seq1  TGCCGTTGCTCCAGTAGCACTAGCTGTCACTCTGCATGGTAGCTCCTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGTTGCTCCAGTAGCACTAGCTGTCACTCTGCATGGTAGCTCCTTAA  100

seq1  TTTGAGCAGACTATCTGACCCTGTGGAGGAGAAGCCTACTCTGAGAGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGCAGACTATCTGACCCTGTGGAGGAGAAGCCTACTCTGAGAGAGG  150

seq1  AGAAAGAAAGATGGGGGGGGGTAGTTGAGGAAAAGAACAAGGCTCGTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGATGGGGGGGGGTAGTTGAGGAAAAGAACAAGGCTCGTGGG  200

seq1  TCTTACCGTAGTACTTAAAGCGCAGAAAGGTTTTCCCACCTCCAGGCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCGTAGTACTTAAAGCGCAGAAAGGTTTTCCCACCTCCAGGCCTC  250

seq1  CACCCATGCTCTCTTTCTGCTTCTCCTGCAGCTCTCTACAGGACAAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATGCTCTCTTTCTGCTTCTCCTGCAGCTCTCTACAGGACAAACTG  300

seq1  CTTTCTCACAGGCAAATCTCAGTGATGGCTTTCCTCCCTAGAGTCTTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCACAGGCAAATCTCAGTGATGGCTTTCCTCCCTAGAGTCTTCCC  350

seq1  CACTATACCTCCTAGCAGGCCATCCCACAGGCTGTCCCCGAAGCTCCGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATACCTCCTAGCAGGCCATCCCACAGGCTGTCCCCGAAGCTCCGTT  400

seq1  TTGAGAACCTTCACAGCACTGTTCTGCACTGGTAATTATTCCTTCGTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAACCTTCACAGCACTGTTCTGCACTGGTAATTATTCCTTCGTTTG  450

seq1  TAGACTGTATATCCATCTGCAAAGAATCTTCTCCAGGGTTGGGGGCCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGTATATCCATCTGCAAAGAATCTTCTCCAGGGTTGGGGGCCAGC  500

seq1  ATCA-TTTGTGAGTATGGCGGATGCTGACCCCATATACACTCTATGAATG  549
      |||| ||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATCATTTTGTGAGTATGGCGGATGCTGATCCCATATACACTCTATGAATG  550

seq1  GCCG  553
      ||||
seq2  GCCG  554

seq1: chr6_38956920_38958015
seq2: B6Ng01-082O06.g_69_1154 (reverse)

seq1  AGCTCTCTGCTGGAAGCCAGGAAGTGAAAGAGAAGACAGGGAAGCGGCAG  50
      ||||||||||||| |||   |||||||||  |||||||||||||| ||||
seq2  AGCTCTCTGCTGG-AGC--AGAAGTGAAAAGGAAGACAGGGAAGC-GCAG  46

seq1  AAGCCATGGGACCCCCTTCAAAGGCACATCCCAATAACTGGCAGAGCTCC  100
      |||||||||   |||||||||| |||||||||||||||| |||  | |||
seq2  AAGCCATGG--ACCCCTTCAAA-GCACATCCCAATAACT-GCAAGGTTCC  92

seq1  CACCAGGCCCAAGAGCAGGACCAAACCTTTAAGACAAAAACCTTTGGGGA  150
      | |||| |||||||||| ||||||  |||| ||  |||||||||||||| 
seq2  CCCCAGCCCCAAGAGCA-GACCAA--CTTTTAGCAAAAAACCTTTGGGG-  138

seq1  ATAGTCC-AGATTCAAACTATGGCACCAAACAGAAGAAATGTCAG-TTTC  198
      ||||||| ||||||||||||||||||||||||||||||||||||| ||||
seq2  ATAGTCCAAGATTCAAACTATGGCACCAAACAGAAGAAATGTCAGTTTTC  188

seq1  TTACATGTGTTGATTTCTGCCTTTACGAATGTTCTAGTGTGGTAGTGCAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGTGTTGATTTCTGCCTTTACGAATGTTCTAGTGTGGTAGTGCAG  238

seq1  CATGATACATAAATTACTGCATAAAGACCAAGGAAGGGAGGGCGGTGACA  298
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CATGATACATAAA-TACTGCATAAAGACCAAGGAAGGGAGGGCGGTGACA  287

seq1  GAGCTCCTGTCTTGTTTTGAAGAACACTGATGTTAGGTTTGGGCAGGGGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCTGTCTTGTTTTGAAGAACACTGATGTTAGGTTTGGGCAGGGGA  337

seq1  A-GGTTATAAGGTAGGTACACAGGCACCTAGACAGAGCAATACAGGGCTT  397
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTATAAGGTAGGTACACAGGCACCTAGACAGAGCAATACAGGGCTT  387

seq1  GCTTGCAGTATGGGGAGCTCACTCAGGCTGAAACAGAGTGCGCAAGAGAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCAGTATGGGGAGCTCACTCAGGCTGAAACAGAGTGCGCAAGAGAG  437

seq1  GAAGCAGGGGAAAAGGATTGCAGAAGTGGGTTGAGGCTCGCAGAGGCCGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGGGGAAAAGGATTGCAGAAGTGGGTTGAGGCTCGCAGAGGCCGC  487

seq1  TGCCCCGTGTCAGAGGCAGCCAACTGTTAAATGCTCAGAAGTGGAGGAGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCGTGTCAGAGGCAGCCAACTGTTAAATGCTCAGAAGTGGAGGAGT  537

seq1  GACTTGCTCAGAACTCTCTGGAGGGAGAGAGCACTCCATTTTGCTGTTTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGCTCAGAACTCTCTGGAGGGAGAGAGCACTCCATTTTGCTGTTTA  587

seq1  ACCTTCAAGGGGTCAGATGTCCCCAGATACATGAGGCAAATCCTTCTGGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCAAGGGGTCAGATGTCCCCAGATACATGAGGCAAATCCTTCTGGA  637

seq1  GCAGATGAGAACCGCAAGCATACCTCTGGTTAATTTCTTAGTCTTTCTTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGAGAACCGCAAGCATACCTCTGGTTAATTTCTTAGTCTTTCTTC  687

seq1  ACACACCAATAAACAACTGGCTTAGCTATACACCATCAACATGTGGGGCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCAATAAACAACTGGCTTAGCTATACACCATCAACATGTGGGGCT  737

seq1  CATATAACTTTAACAGCATCATGTAACTCAAGAGAGCCTTCCTTTACCAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAACTTTAACAGCATCATGTAACTCAAGAGAGCCTTCCTTTACCAT  787

seq1  TCTCTGAACGGGAAATGCTTTTCCTCCAACACTCAGTGAGCCATTGTTCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAACGGGAAATGCTTTTCCTCCAACACTCAGTGAGCCATTGTTCT  837

seq1  CCAAACTTCCAGACATCCAAAGGCTTTTAAATGCTGAGTTGTTTTGGCTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTTCCAGACATCCAAAGGCTTTTAAATGCTGAGTTGTTTTGGCTT  887

seq1  TTTCCTCCTTGAGTTCATGCTATCAGACCTGCGGAGAGTGGGGTTATAAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCCTTGAGTTCATGCTATCAGACCTGCGGAGAGTGGGGTTATAAC  937

seq1  CTAAGAGTAGATATACTGAGGGGCGGAGGCACTGTGGCACCTGGTTTGGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGTAGATATACTGAGGGGCGGAGGCACTGTGGCACCTGGTTTGGG  987

seq1  TGAGAAAGCAACAGGAATTAGATTGTTTGACATCCTTAGTTCTACTTTCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAGCAACAGGAATTAGATTGTTTGACATCCTTAGTTCTACTTTCA  1037

seq1  TGAAATTATTTGAACACAGAAATAACCAGGTTCCATCATCATGGAATTC  1096
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTATTTGAACACAGAAATAACCAGGTTCCATCATCATGGAATTC  1086