BAC Information

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BAC

Clone NameB6Ng01-083D18
Chromosome11 (Build37)6 (Build37)
Map Location 84,830,817 - 84,830,931120,625,878 - 120,627,005
singlet/doubletsingletsinglet
Overlap geneUsp32
Upstream geneAp1gbp1, Dusp14, Tada2l, OTTMUSG00000000997, Acaca, LOC100043671, Aatf, Lhx1, Mrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4
Downstream geneLOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d, Bcas3, Tbx2, Tbx4, LOC668751
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083D18.bB6Ng01-083D18.g
ACCDH897554DH897555
length1,0301,116
definitionDH897554|Mus musculus domesticus DNA, BAC clone: B6Ng01-083D18, 5' end.DH897555|Mus musculus domesticus DNA, BAC clone: B6Ng01-083D18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(84,830,817 - 84,830,931)(120,625,878 - 120,627,005)
sequence
gaattcctaaaattatatccgtgattattaagcttttttataataaaggt
cctttattaggtccttttctgatagtcaaagctgcaatgagaactctatc
aatctcccaagtgccacccattaattgctcctagatggtaaccagacttt
ctcctactcagagcacattccaagaggttgtaaaacaattaaccaaaggt
cataaaaaaggaactaatgatttattataggtgctaagacagaagataaa
atattgactgggcttatctatacaaaactttgctagtaacttagggtctt
aaatcttcagtgagcctgtgatgctgagacaggtgatggatgtttagtca
gataattactcctaatggctctgcatgtaaacattctcagttgtaaactt
ctgtttcaatttatgatttggtttttgggtgaacttgtgatgaactttgt
aacatgctatcatgtactctgaaagatgttgtaagtgctgaggacaaaga
gaagagtcagaaatgaactgagaagaacagaggtgagaagaactgagctg
tggacaagtttttagacagaacactttttagacagaaccaaactcaagaa
gaacatagaagtataggcccagcattgggagaaaaggcattgagagttag
agcattattgtgacatcagagcaggagaagagcgatattagaaggatgca
gagcggaataacatagaaactataggtaacaaagaactaagagagcaatg
tgcagaatgcagagggaaagaggaaaaaagaagacgctgcagagagcaga
aagagcacgcaggcttctccttaagaacaggtcccatggtaaggaccagg
cttagtctcattaaaaggaacaaagggccaagcagcggtggcacacacct
gtaatcccagcacttgggaggcagaggcagtggatttctgagttcgagac
cagcctggtctacagagtgagttccaggacagccagggctacacagagaa
accctgtcttgaaagccaaaaaggtgagct
gaattccaggacagccaggaaagcctgttttgaaaaacaataaaagtaag
aaagatatgaaacattttaagatatgttcacctatgtatggcttttgaca
ctgtttgtagccccttcccttctcctttcccctcccctcccctccccctc
cctttgcccccacacattgggctggaacctgaagatggacatgctaagcc
aggctctctctgccatgagccacacatccagcctgctgcaccttcttaac
attctcttttaactgagtctcagtggttgacaccctcccttgtttttttc
tttcattcctttgttgtgctcaactcctgatgtctctgggcttgttctgg
gcactgtggaggaggggtagaattttgggcctgtatcgtggtgctaaacc
ccagacttcatataagtaaactgtgaagttctgcagcttttttttttcct
ctctcgctgttctttgaattaatgttgttgtgtcctgtgtcttgtacttc
attagctacacacaggtttcaaatgtaatttcataacaatacacaagagc
tagtattcattttcttgtttaaagtctctgacctcatctgacctttatga
agggtacttggctggtataagtgatagcatgttctttggtgcttccctct
tctgtggtagatttctctatagcactagctcctggctaagtcaggcctac
tttttctctttggtaggttttgctaaagtaactttgttacttgaaagtag
taggtcatagcacgtggtcatctcaagtatacatctatactgtgcatgat
gccttgtttatcccaacaacaaaaagtcagtgtgaaaatagagcagtgat
tgggccacagtgataccaaccatttcacttattaatgtttaatattaatt
cacatctgaagtgtactttccaggagttggtgtaagttcttagactgaga
aggctgtagtagtctttgtgattagatagttattttgttttccttctggc
cagtcttttaatgacaccccttcctgaatgatcattgttttctgcaacca
tggcacttggaatggttattggcctacagaaagtggttaaataacagaac
tctctttgggaatcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_84830817_84830931
seq2: B6Ng01-083D18.b_944_1064

seq1  TAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCAAGGC  50
      |||||||||||||||||||||||||||| |  ||||||||||||| || |
seq2  TAATCCCAGCACTTGGGAGGCAGAGGCA-GTGGATTTCTGAGTTCGAGAC  49

seq1  CAGCCTGGTCTACAAAGTGAGTTCTAGGACAGTCAGGGCTATACAGAGAA  100
      |||||||||||||| ||||||||| ||||||| |||||||| ||||||||
seq2  CAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAA  99

seq1  ACCCTGTCT-------CAAAAA  115
      |||||||||       ||||||
seq2  ACCCTGTCTTGAAAGCCAAAAA  121

seq1: chr6_120625878_120627005
seq2: B6Ng01-083D18.g_67_1182

seq1  GAATTCCAGGACAGCCAGGAAAGCCTGTTTTGAAAAACAATAAAAGTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGAAAGCCTGTTTTGAAAAACAATAAAAGTAAG  50

seq1  AAAGATATGAAACATTTTAAGATATGTTCACCTATGTATGGCTTTTGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATATGAAACATTTTAAGATATGTTCACCTATGTATGGCTTTTGACA  100

seq1  CTTGTTTGTAGCCCCTCCCCTTCTCCCTTTCCCCTCCCCTCCCCTCCCCC  150
      | |||||||||||||| ||||||| |||||||||||||||||||||||||
seq2  C-TGTTTGTAGCCCCTTCCCTTCT-CCTTTCCCCTCCCCTCCCCTCCCCC  148

seq1  TCCCTTTGCCCCCACACATTGGGCTGGAACCTGAAGATGGACATGCTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTGCCCCCACACATTGGGCTGGAACCTGAAGATGGACATGCTAAG  198

seq1  CCAGGCTCTCTCTGCCATGAGCCACACATCCAGCCTGCTGCACCTTCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTCTCTCTGCCATGAGCCACACATCCAGCCTGCTGCACCTTCTTA  248

seq1  ACATTCTCTTTTAACTGAGTCTCAGTGGTTGACACCCTCCCTTGTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTCTTTTAACTGAGTCTCAGTGGTTGACACCCTCCCTTGTTTTTT  298

seq1  TCTTTCATTCCTTTGTTGTGCTCAACTCCTGATGTCTCTGGGCTTGTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCATTCCTTTGTTGTGCTCAACTCCTGATGTCTCTGGGCTTGTTCT  348

seq1  GGGCACTGTGGAGGAGGGGTAGAATTTTGGGCCTGTATCGTGGTGCTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACTGTGGAGGAGGGGTAGAATTTTGGGCCTGTATCGTGGTGCTAAA  398

seq1  CCCCAGACTTCATATAAGTAAACTGTGAAGTTCTGCAGCTTTTTTTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGACTTCATATAAGTAAACTGTGAAGTTCTGCAGCTTTTTTTTTTC  448

seq1  CTCTCTCGCTGTTCTTTGAATTAATGTTGTTGTGTCCTGTGTCTTGTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCGCTGTTCTTTGAATTAATGTTGTTGTGTCCTGTGTCTTGTACT  498

seq1  TCATTAGCTACACACAGGTTTCAAATGTAATTTCATAACAATACACAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGCTACACACAGGTTTCAAATGTAATTTCATAACAATACACAAGA  548

seq1  GCTAGTATTCATTTTCTTGTTTAAAGTCTCTGACCTCATCTGACCTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTATTCATTTTCTTGTTTAAAGTCTCTGACCTCATCTGACCTTTAT  598

seq1  GAAGGGTACTTGGCTGGTATAAGTGATAGCATGTTCTTTGGTGCTTCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTACTTGGCTGGTATAAGTGATAGCATGTTCTTTGGTGCTTCCCT  648

seq1  CTTCAGTGGTAGATTTCTCTATAGCACTAGCTCCTGGCTAAGTCAGGCCT  700
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTGGTAGATTTCTCTATAGCACTAGCTCCTGGCTAAGTCAGGCCT  698

seq1  ACTTTTTCTCTTTGGTAGG-TTTGCTAAAGTAACTTTGTTACTTGAAAGT  749
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACTTTTTCTCTTTGGTAGGTTTTGCTAAAGTAACTTTGTTACTTGAAAGT  748

seq1  AGTAGGTCATAGCACGTGGTCATCTCAAGTATACATCTATACTGTGCATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGTCATAGCACGTGGTCATCTCAAGTATACATCTATACTGTGCATG  798

seq1  ATGCCTTGTTTATCCCAACAACAAAAAGTCAGTGTGAAAATAGAGCAGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTGTTTATCCCAACAACAAAAAGTCAGTGTGAAAATAGAGCAGTG  848

seq1  ATTGGGCCACAGTGATACCAACCATTTCACTTATTAATGTTTAATATTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGCCACAGTGATACCAACCATTTCACTTATTAATGTTTAATATTAA  898

seq1  TTCACATCTGAAGTGTACTTTCCAGGAG-TGGTGTAAGTTCTTAGAACTG  948
      |||||||||||||||||||||||||||| |||||||||||||||| ||||
seq2  TTCACATCTGAAGTGTACTTTCCAGGAGTTGGTGTAAGTTCTTAG-ACTG  947

seq1  AGAAGGCTGTTAAGTAGTCTTGTTGATTAGAATAGTTATTTTTGTTTTCC  998
      ||||||||||  |||||||||  ||||||| ||||||| |||||||||||
seq2  AGAAGGCTGT--AGTAGTCTTTGTGATTAG-ATAGTTA-TTTTGTTTTCC  993

seq1  TTCTGGCCAGTTCTTTTAATGAACACCCCTTCCCTGAATGATCATTGTTT  1048
      |||||||||| |||||||||| ||||||||| ||||||||||||||||||
seq2  TTCTGGCCAG-TCTTTTAATG-ACACCCCTT-CCTGAATGATCATTGTTT  1040

seq1  TCTGCAACAATGGCACTTGGGATAGGTTATTTGCCTAACAGAAAGTGTGT  1098
      |||||||| ||||||||||| || ||||||| |||| |||||||||| ||
seq2  TCTGCAACCATGGCACTTGGAAT-GGTTATTGGCCT-ACAGAAAGTG-GT  1087

seq1  TAAATTAACAGATCTCCTTTGGGGAATCCT  1128
      |||| ||||||| |||  || |||||||||
seq2  TAAA-TAACAGAACTCTCTTTGGGAATCCT  1116