BAC Information

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BAC

Clone NameB6Ng01-083N06
Chromosome6 (Build37)
Map Location 40,781,428 - 40,946,491
singlet/doubletdoublet
Overlap geneEG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208
Upstream geneLOC665247, LOC665254, EG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam
Downstream gene2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083N06.bB6Ng01-083N06.g
ACCDH897981DH897982
length1,2441,144
definitionDH897981|Mus musculus domesticus DNA, BAC clone: B6Ng01-083N06, 5' end.DH897982|Mus musculus domesticus DNA, BAC clone: B6Ng01-083N06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,781,428 - 40,782,708)(40,945,332 - 40,946,491)
sequence
gaattcttctgattgttccagcaagcaacgattcctggagtacccacctg
tttctacgacaccattccccagtatgctgccagtaacattcagtaccagc
ccacaggcatcaccatggacctgaccctcctggaaaactcaacatctgcc
caggcagctgcagctccaagagttgtgtctgatcctctttctggaaagat
cagctctcttaaactgagtgtgacttaccatacggaaaatatgctgcagg
tcaaggtaatcctcacatggcagttgctgatttttttcttgtttgtaatc
cttctctcatgtattatatccccctaactatagtttttccaccatcctcc
ccttccagttcctcccttttacctcctgtctcccccatatccactcctcc
tcttcctcttctctttccgttcaaaagagagcaggcctcccagagatatc
aaatatggcattacaaattacaataagtctaggcacatactctcatatca
agactggatgctgaagcaacccagtaggagggaaaggtcccaaagcagga
taaaaagacagagacagtcctcattcccactgttaggagtaccacaagaa
catagtgttcttcatactgatgttttttattcaaggctttatacagatga
gaatattaaaagactgttaatggtccatcacggaactatgtgcctttaat
cccaatagtcaataggcagagataggtggatctctatggaaattggtctg
ttgctctgaatagcaagtttcatgccagccaaaggtacactgagactctc
acaaataaacatacagatagacagacagacaattaatgcaattccctatc
ttacagatacagaagcagaagattcgagaagtgaagatcagaaaggagta
gacagctagtcaggatatgaacttagacccaccacagttttgcatcttct
cttgtgatcagtattctgcatcacacatgtcataaaacctatcccctgag
aaccatgagtctgctttgtgaggaacacacaggaaagactctagtttact
ccgacgtttagcagttctgtagtggcactgttaacattgtatcagcagca
gtagaaaaatcctcataactccttttcccttccgattaagtatcagtaag
aaaaaggatgagtcagtaaccctgaacatccttcccactacttgaactct
tgtatagtaaggttagaacaaccattgattcaaattcagcgtaa
gaattcccatgggatgagataagtcctatgagtaaaaacaggttttctca
ctgtaatattcatggataacctcaaggttgaactatgtacaaaagatggt
atgcaaacagtacatggaaacaaacttctgagaagctggtttatagcatg
caaccactcttgaaagacagcaaaaggaacagcaagaaataccgccagcc
tttatcttttcctgacctttgtcaactaaggaaccttgagcttatagaga
cagtattaaaaataagggggaaattgcaattaactgtacagggagtcttc
attgcttcaatgtcagtacctgttattttggctccatgaaaacaggaaaa
catcgtggagtccattctcgcacctcaacataaacatattgtaatcttat
tttctttctgaccagggtgattctggtggacctgttgtctgcaatggaga
gatccagggtattgtctcctggggttcagtctgtgcaatgagagggaagc
ctggtgtttacaccaaagtctgcaactacctaagctggattcaggagacc
atggcgaacaactgatttctcttgccttccataaatcatctatttcttat
ccatttctctttcttcttatgcctgaaatgaggttgaaataaatacattt
ctgctgctctatatctaataacattttgctcttgtattctatgatttacc
attctttaaaaattggttgataaatgagaacataattatagagttgaaaa
ttctaaataatttcaacattcatataacaataagaattttctcatatttt
tctatggtctatgatgtatggtgaatacattagtaaagtgcttgcattag
cattatatttttacagaataatgataatattttattaataggtcatatat
attttgttttaaaaatatagctatcatacacatatgtttaaacttcctac
attgcatatttcatctaaaatagatagcatgaaattgttattcattgata
gcataccaattgatatgaaactgctatctattttttcatcatcagttttc
taagtacttctgaaaactgaaatcatcatgatatttctgaatgctggggt
cttgcatgtcttaaaatacaggcctatgtctctttaattttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_40781428_40782708
seq2: B6Ng01-083N06.b_47_1290

seq1  GAATTCTTCTGATTGTTCCAGCAAGCAACGATTCCTGGAGTACCCACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGATTGTTCCAGCAAGCAACGATTCCTGGAGTACCCACCTG  50

seq1  TTTCTACGACACCATTCCCCAGTATGCTGCCAGTAACATTCAGTACCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACGACACCATTCCCCAGTATGCTGCCAGTAACATTCAGTACCAGC  100

seq1  CCACAGGCATCACCATGGACCTGACCCTCCTGGAAAACTCAACATCTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGCATCACCATGGACCTGACCCTCCTGGAAAACTCAACATCTGCC  150

seq1  CAGGCAGCTGCAGCTCCAAGAGTTGTGTCTGATCCTCTTTCTGGAAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGCTGCAGCTCCAAGAGTTGTGTCTGATCCTCTTTCTGGAAAGAT  200

seq1  CAGCTCTCTTAAACTGAGTGTGACTTACCATACGGAAAATATGCTGCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTCTTAAACTGAGTGTGACTTACCATACGGAAAATATGCTGCAGG  250

seq1  TCAAGGTAATCCTCACATGGCAGTTGCTGATTTTTTTCTTGTTTGTAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTAATCCTCACATGGCAGTTGCTGATTTTTTTCTTGTTTGTAATC  300

seq1  CTTCTCTCATGTATTATATCCCCCTAACTATAGTTTTTCCACCATCCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTCATGTATTATATCCCCCTAACTATAGTTTTTCCACCATCCTCC  350

seq1  CCTTCCAGTTCCTCCCTTTTACCTCCTGTCTCCCCCATATCCACTCCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAGTTCCTCCCTTTTACCTCCTGTCTCCCCCATATCCACTCCTCC  400

seq1  TCTTCCTCTTCTCTTTCCGTTCAAAAGAGAGCAGGCCTCCCAGAGATATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCTTCTCTTTCCGTTCAAAAGAGAGCAGGCCTCCCAGAGATATC  450

seq1  AAATATGGCATTACAAATTACAATAAGTCTAGGCACATACTCTCATATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGGCATTACAAATTACAATAAGTCTAGGCACATACTCTCATATCA  500

seq1  AGACTGGATGCTGAAGCAACCCAGTAGGAGGGAAAGGTCCCAAAGCAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGATGCTGAAGCAACCCAGTAGGAGGGAAAGGTCCCAAAGCAGGA  550

seq1  TAAAAAGACAGAGACAGTCCTCATTCCCACTGTTAGGAGTACCACAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGACAGAGACAGTCCTCATTCCCACTGTTAGGAGTACCACAAGAA  600

seq1  CATAGTGTTCTTCATACTGATGTTTTTTATTCAAGGCTTTATACAGATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGTTCTTCATACTGATGTTTTTTATTCAAGGCTTTATACAGATGA  650

seq1  GAATATTAAAAGACTGTTAATGGTCCATCACGGAACTATGTGCCTTTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTAAAAGACTGTTAATGGTCCATCACGGAACTATGTGCCTTTAAT  700

seq1  CCCAATAGTCAATAGGCAGAGATAGGTGGATCTCTATGGAAATTGGTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATAGTCAATAGGCAGAGATAGGTGGATCTCTATGGAAATTGGTCTG  750

seq1  TTGCTCTGAATAGCAAGTTTCATGCCAGCCAAAGGTACACTGAGACTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTGAATAGCAAGTTTCATGCCAGCCAAAGGTACACTGAGACTCTC  800

seq1  ACAAATAAACATACAGATAGACAGACAGACAATTAATGCAATTCCCTATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAAACATACAGATAGACAGACAGACAATTAATGCAATTCCCTATC  850

seq1  TTACAGATACAGAAGCAGAAGATTCGAGAAGTGAAGATCAGAAAGGAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGATACAGAAGCAGAAGATTCGAGAAGTGAAGATCAGAAAGGAGTA  900

seq1  GACAGCTAGTCAGGATATGAACTTAGACCCACCACAGTTTTGCATCTTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTAGTCAGGATATGAACTTAGACCCACCACAGTTTTGCATCTTCT  950

seq1  CTTGTGATCAGTATTCTGCATCACACATGTCATTAAAACCTATCCCCCTG  1000
      |||||||||||||||||||||||||||||||| |||||||||| ||||||
seq2  CTTGTGATCAGTATTCTGCATCACACATGTCA-TAAAACCTAT-CCCCTG  998

seq1  AGAACCATGAGTCTGCTTTGTGAGGAACACACAGGAGAGACTCTAGTTTA  1050
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGAACCATGAGTCTGCTTTGTGAGGAACACACAGGAAAGACTCTAGTTTA  1048

seq1  CTCCCGACAGTTTTAGCAGTTTCTGTAGTGGGCACTGTTAACA-TGTATC  1099
      || |||||   |||||||| ||||||||| ||||||||||||| ||||||
seq2  CT-CCGAC--GTTTAGCAG-TTCTGTAGT-GGCACTGTTAACATTGTATC  1093

seq1  AGCAGCAGTAG-AAGATCCTCATAAACTCCTTTTTCCCCTTCCCAGATTT  1148
      ||||||||||| || |||||||| ||||||||||  |||||||  |||| 
seq2  AGCAGCAGTAGAAAAATCCTCAT-AACTCCTTTT--CCCTTCC--GATT-  1137

seq1  ACAGTACCAGTAAGAAAAGGTATGAGGTCCCAGTACCTCTGACCATCCCT  1198
        |||| ||||||||||| | |||||    ||||| | |||| ||| |||
seq2  -AAGTATCAGTAAGAAAAAGGATGAG---TCAGTAACCCTGAACAT-CCT  1182

seq1  TCTCCACCACTTAACACCTGTGAGAACTGCTTGTATGATGTAAGTGTTAA  1248
      || |||| ||||           ||||| |||||||   ||||| ||| |
seq2  TC-CCACTACTT-----------GAACT-CTTGTAT--AGTAAG-GTT-A  1215

seq1  GACCAACCCATTTGGACTCCAAATTCAGCGTAA  1281
      || ||| |||||  || | ||||||||||||||
seq2  GAACAA-CCATT--GA-TTCAAATTCAGCGTAA  1244

seq1: chr6_40945332_40946491
seq2: B6Ng01-083N06.g_69_1212 (reverse)

seq1  AATAAAATTAAAAATATAAGGAAGACATAGCACTGTATTTTAGGACATGC  50
      ||||||||||||          ||||||||  |||||||||| |||||||
seq2  AATAAAATTAAA---------GAGACATAGGCCTGTATTTTAAGACATGC  41

seq1  AAGACACCAGGCATCAGAAATATTCATGATGAATTTCAGTTTTTCAAGGA  100
      ||||| ||||   ||||||||| |||||||| |||||||||||   || |
seq2  AAGACCCCAGCATTCAGAAATA-TCATGATG-ATTTCAGTTTT--CAGAA  87

seq1  GTACTTAGATAACTTGGTGATTGGTAAAATAGATAGCAGTTTCATATCAA  150
      ||||||||| ||| || ||| ||  |||||||||||||||||||||||||
seq2  GTACTTAGAAAAC-TGATGA-TGAAAAAATAGATAGCAGTTTCATATCAA  135

seq1  TTGGTATGCTATCAATGAATAACAATTTCATGCTATCTATTTTAAGATGG  200
      ||||||||||||||||||||||||||||||||||||||||||| |||| |
seq2  TTGGTATGCTATCAATGAATAACAATTTCATGCTATCTATTTT-AGAT-G  183

seq1  AAATATGCAATGTAGGAAGTTTAAACATATGTGTATGATAGCTATATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGCAATGTAGGAAGTTTAAACATATGTGTATGATAGCTATATTTT  233

seq1  TAAAACAAAATATATATGACCTATTAATAAAATATTATCATTATTCTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAAAATATATATGACCTATTAATAAAATATTATCATTATTCTGTA  283

seq1  AAAATATAATGCTAATGCAAGCACTTTACTAATGTATTCACCATACATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAATGCTAATGCAAGCACTTTACTAATGTATTCACCATACATCA  333

seq1  TAGACCATAGAAAAATATGAGAAAATTCTTATTGTTATATGAATGTTG-A  399
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAGACCATAGAAAAATATGAGAAAATTCTTATTGTTATATGAATGTTGAA  383

seq1  ATTATTTAGAATTTTCAACTCTATAATTATGTTCTCATTTATCAACCAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTAGAATTTTCAACTCTATAATTATGTTCTCATTTATCAACCAAT  433

seq1  TTTTAAAGAATGGTAAATCATAGAATACAAGAGCAAAATGTTATTAGATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGAATGGTAAATCATAGAATACAAGAGCAAAATGTTATTAGATA  483

seq1  TAGAGCAGCAGAAATGTATTTATTTCAACCTCATTTCAGGCATAAGAAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCAGCAGAAATGTATTTATTTCAACCTCATTTCAGGCATAAGAAGA  533

seq1  AAGAGAAATGGATAAGAAATAGATGATTTATGGAAGGCAAGAGAAATCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAATGGATAAGAAATAGATGATTTATGGAAGGCAAGAGAAATCAG  583

seq1  TTGTTCGCCATGGTCTCCTGAATCCAGCTTAGGTAGTTGCAGACTTTGGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCGCCATGGTCTCCTGAATCCAGCTTAGGTAGTTGCAGACTTTGGT  633

seq1  GTAAACACCAGGCTTCCCTCTCATTGCACAGACTGAACCCCAGGAGACAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACACCAGGCTTCCCTCTCATTGCACAGACTGAACCCCAGGAGACAA  683

seq1  TACCCTGGATCTCTCCATTGCAGACAACAGGTCCACCAGAATCACCCTGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTGGATCTCTCCATTGCAGACAACAGGTCCACCAGAATCACCCTGG  733

seq1  TCAGAAAGAAAATAAGATTACAATATGTTTATGTTGAGGTGCGAGAATGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAGAAAATAAGATTACAATATGTTTATGTTGAGGTGCGAGAATGG  783

seq1  ACTCCACGATGTTTTCCTGTTTTCATGGAGCCAAAATAACAGGTACTGAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACGATGTTTTCCTGTTTTCATGGAGCCAAAATAACAGGTACTGAC  833

seq1  ATTGAAGCAATGAAGACTCCCTGTACAGTTAATTGCAATTTCCCCCTTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGCAATGAAGACTCCCTGTACAGTTAATTGCAATTTCCCCCTTAT  883

seq1  TTTTAATACTGTCTCTATAAGCTCAAGGTTCCTTAGTTGACAAAGGTCAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATACTGTCTCTATAAGCTCAAGGTTCCTTAGTTGACAAAGGTCAG  933

seq1  GAAAAGATAAAGGCTGGCGGTATTTCTTGCTGTTCCTTTTGCTGTCTTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGATAAAGGCTGGCGGTATTTCTTGCTGTTCCTTTTGCTGTCTTTC  983

seq1  AAGAGTGGTTGCATGCTATAAACCAGCTTCTCAGAAGTTTGTTTCCATGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGGTTGCATGCTATAAACCAGCTTCTCAGAAGTTTGTTTCCATGT  1033

seq1  ACTGTTTGCATACCATCTTTTGTACATAGTTCAACCTTGAGGTTATCCAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTGCATACCATCTTTTGTACATAGTTCAACCTTGAGGTTATCCAT  1083

seq1  GAATATTACAGTGAGAAAACCTGTTTTTACTCATAGGACTTATCTCATCC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTACAGTGAGAAAACCTGTTTTTACTCATAGGACTTATCTCATCC  1133

seq1  CATGGGAATTC  1160
      |||||||||||
seq2  CATGGGAATTC  1144