BAC Information

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BAC

Clone NameB6Ng01-084D11
Chromosome6 (Build37)3 (Build37)
Map Location 18,835,442 - 18,835,968156,594,790 - 156,595,469
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084D11.bB6Ng01-084D11.g
ACCDH898243DH898244
length1,005681
definitionDH898243|Mus musculus domesticus DNA, BAC clone: B6Ng01-084D11, 5' end.DH898244|Mus musculus domesticus DNA, BAC clone: B6Ng01-084D11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,442 - 18,835,968)(156,594,790 - 156,595,469)
sequence
gaattctttgttcagttctgagccccattttttaatggggttattagatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgatttgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccaatgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattcagccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagaacttccttaatttctttcttcagagatttgaagtttttatcata
cagatctttcacttccttagttagagtcacgccagatattttatattatt
tgtgactattgagaaggtgttgtttccctaatttctttctcagcctgttt
attct
gaattcctattccccagagtgctatgaaattgtcaaatattaagtagtta
cagtagagtatggcatacagtgcatgccggacacatattatttagcatca
ttgtacttagttttggtgggaaaaaatgaagaaactccggagtcttgttt
cccctgtgctgtgatgagcacgataacacatggtttcatttcttatatgc
ttttccagacctcctttgctcagattttataacactaattctctcttcaa
ttattttctaatgtgattattgtttatagcttcctattcatatgcaatat
gattttatggggtgaaatttattttgtgcaaatatatgaaatcatgtcat
taattaccacagcacagaaaagaaaataagctaccccctctgaatgttat
ttgaaaattaacaccgtacatgttcctccatggttgaatactctgcaatt
aaaataatgtgattatttcctaagaacaattttcattaaaatttatttga
ataaaatgtccattctatagtattcttaaaagtgaaactttatttaggta
ctcacattttaaaaattgtgcttgtttgttggttggttggttggttggtt
ggttggttcatttggagaaatttttccttctataacccacagtgatctga
aactcacttgtagccccaggatactctggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835442_18835968
seq2: B6Ng01-084D11.b_52_579 (reverse)

seq1  CCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50

seq1  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100

seq1  ACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCT  150
      |||||||||||||||| ||||||||||||  |||||||||||||||||||
seq2  ACAACTGGTTGTTATCGTGTAGAAGAATGCAAATCGATCCATACTTATCT  150

seq1  CCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250

seq1  TGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTG  299
      |||||| ||||||||| ||||||||||||||||||||||| |||||||| 
seq2  TGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTA  300

seq1  AGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  349
      || | |||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  350

seq1  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  399
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAGACACTGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  400

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  450

seq1  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAA  499
      |||||||||||||||||||||||||||||||| |||||||||||||| ||
seq2  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCTAATAACCCCATTAAAAA  500

seq1  ATGGGGCTCAGAACTGAACAAAGAATTC  527
      ||||||||||||||||||||||||||||
seq2  ATGGGGCTCAGAACTGAACAAAGAATTC  528

seq1: chr3_156594790_156595469
seq2: B6Ng01-084D11.g_67_747

seq1  GAATTCCTATTCCCCAGAGTGCTATGAAATTGTCAAATATTAAGTAGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATTCCCCAGAGTGCTATGAAATTGTCAAATATTAAGTAGTTA  50

seq1  CAGTAGAGTATGGCATACAGTGCATGCCGGACACATATTATTTAGCATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGAGTATGGCATACAGTGCATGCCGGACACATATTATTTAGCATCA  100

seq1  TTGTACTTAGTTTTGGTGGGAAAAAATGAAGAAACTCCGGAGTCTTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTTAGTTTTGGTGGGAAAAAATGAAGAAACTCCGGAGTCTTGTTT  150

seq1  CCCCTGTGCTGTGATGAGCACGATAACACATGGTTTCATTTCTTATATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTGCTGTGATGAGCACGATAACACATGGTTTCATTTCTTATATGC  200

seq1  TTTTCCAGACCTCCTTTGCTCAGATTTTATAACACTAATTCTCTCTTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAGACCTCCTTTGCTCAGATTTTATAACACTAATTCTCTCTTCAA  250

seq1  TTATTTTCTAATGTGATTATTGTTTATAGCTTCCTATTCATATGCAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCTAATGTGATTATTGTTTATAGCTTCCTATTCATATGCAATAT  300

seq1  GATTTTATGGGGTGAAATTTATTTTGTGCAAATATATGAAATCATGTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTATGGGGTGAAATTTATTTTGTGCAAATATATGAAATCATGTCAT  350

seq1  TAATTACCACAGCACAGAAAAGAAAATAAGCTACCCCCTCTGAATGTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACCACAGCACAGAAAAGAAAATAAGCTACCCCCTCTGAATGTTAT  400

seq1  TTGAAAATTAACACCGTACATGTTCCTCCATGGTTGAATACTCTGCAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATTAACACCGTACATGTTCCTCCATGGTTGAATACTCTGCAATT  450

seq1  AAAATAATGTGATTATTTCCTAAGAACAATTTTCATTAAAATTTATTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATGTGATTATTTCCTAAGAACAATTTTCATTAAAATTTATTTGA  500

seq1  ATAAAATGTCCATTCTATAGTATTCTTAAAAGTGAAACTTTATTTAGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATGTCCATTCTATAGTATTCTTAAAAGTGAAACTTTATTTAGGTA  550

seq1  CTCACATTTTAAAAATTGTGCTTGTTTGTTGGTTGGTTGGTTGGTTGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATTTTAAAAATTGTGCTTGTTTGTTGGTTGGTTGGTTGGTTGGTT  600

seq1  GGTTGGTTCATTTGGAGAAA-TTTTCCTTCTATAACCCACAGTGATCTGA  649
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGTTGGTTCATTTGGAGAAATTTTTCCTTCTATAACCCACAGTGATCTGA  650

seq1  AACTCACATGTAGCCCCAGGATACTCTGGAA  680
      ||||||| |||||||||||||||||||||||
seq2  AACTCACTTGTAGCCCCAGGATACTCTGGAA  681