BAC Information

Click to search

BAC

Clone NameB6Ng01-084D24
Chromosome6 (Build37)
Map Location 109,856,887 - 109,967,392
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC639110, LOC100043720
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084D24.bB6Ng01-084D24.g
ACCDH898267DH898268
length1,027690
definitionDH898267|Mus musculus domesticus DNA, BAC clone: B6Ng01-084D24, 5' end.DH898268|Mus musculus domesticus DNA, BAC clone: B6Ng01-084D24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,966,771 - 109,967,392)(109,856,887 - 109,857,576)
sequence
gaattctggaggaccttccatggtgataagattgattttaagaatgtgcc
ttgccaccacccagtgcatagatggagtgctgaggatcaatgcagaactc
gagcagctgagctacatctaagcccttccatgtgctttacttcatctcta
agttaatgtacttgaaatatctaatgaaatgtcaatgctaaccaattatt
tgtcatctgtactgttttaggaaataataagagagagcctgaacatattt
aaactaaatacattcttctaaataattttgaatttccaaaatgcaggaaa
aaattaaatgcaaaaataggtatatgttgtttaattttcaaatatttgta
tgtttgaaagaatgtctaagatttctaattttattcaaacattttagttt
gtgtgatttcagtctctttaagtttggagacttattttatgatataatat
atggtctatcatggtgaatattttactagttcagaaaagagtttatattt
gactgttagatatggtattacgtgaatgttatctatactaagattattga
ctgtgttatttatatattccatatccttaatgactcagagttctacttgt
tgttatatattaaattactaattaaaattacattcttttgtaaaaataac
tcttagggaaaaatattcatcccattggattttacccttagacctcaaat
tcattctctctcaacagacaatctacacattcaatagcctcaaaagtctt
aactaattctcaagtttaaaattcaaatatctatatgtcatcaaagtaag
ttatggctaaaattcaagggaaaggtttttaccatctgtaaacttaagaa
actaggtaaatcagatgttttcaaaatacaatgagaaagtaaaggctaag
cattttgacccttaaagtaagaataggaacggaaaggcaagataggccac
aagtaggatccacacacagtagagtctcataaacgaactgaaagtttgag
aataatttttcttgggctgaaactctg
gaattctacatatttttacaaagagaaacagaagactgctgcctagagtg
ctagcaagagggtctcaaagttcacccccacaatgccacacttcctccaa
caagcctgcatgtagtctaacaaggccctatttcctaaccatgccattcc
ctaggccaaatatattcaaaccaccatagactttaagagaaagttgaaaa
atacatgtgttattttttggagggattgttttattttctttaaaatttta
ttgctcacactaacacaagcacaatgttaaaaaatacttttttcctggaa
tatacataaaaactaaaattaagtgagagatattccctttttattttatt
attttcactgtccaaataaacctttgactgcaaaggacccaagatataag
gggtaggtaaaatcctagttcatgttaaaataaaaatgttatatatttaa
aactttatgcttaagtaaatgttatgtatattaattgtatgcaaaagggg
tctgcaaccctataggtggaacagcaatacgaactaaccagtacccccgg
agctcgtgtctctagctgcatatgtatcagaagatggcctagtcggccat
catttggaagagaggcccattggtcttgcaaactttatatgcctcagtac
gggggaacgccagggccaagaagtggggggggggggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_109966771_109967392
seq2: B6Ng01-084D24.b_47_668 (reverse)

seq1  ATTAGTAATTTAATATATAACAACAAGTAGAACTCTGAGTCATTAAGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTAATTTAATATATAACAACAAGTAGAACTCTGAGTCATTAAGGAT  50

seq1  ATGGAATATATAAATAACACAGTCAATAATCTTAGTATAGATAACATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATATATAAATAACACAGTCAATAATCTTAGTATAGATAACATTCA  100

seq1  CGTAATACCATATCTAACAGTCAAATATAAACTCTTTTCTGAACTAGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAATACCATATCTAACAGTCAAATATAAACTCTTTTCTGAACTAGTAA  150

seq1  AATATTCACCATGATAGACCATATATTATATCATAAAATAAGTCTCCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCACCATGATAGACCATATATTATATCATAAAATAAGTCTCCAAA  200

seq1  CTTAAAGAGACTGAAATCACACAAACTAAAATGTTTGAATAAAATTAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGAGACTGAAATCACACAAACTAAAATGTTTGAATAAAATTAGAA  250

seq1  ATCTTAGACATTCTTTCAAACATACAAATATTTGAAAATTAAACAACATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGACATTCTTTCAAACATACAAATATTTGAAAATTAAACAACATA  300

seq1  TACCTATTTTTGCATTTAATTTTTTCCTGCATTTTGGAAATTCAAAATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTATTTTTGCATTTAATTTTTTCCTGCATTTTGGAAATTCAAAATTA  350

seq1  TTTAGAAGAATGTATTTAGTTTAAATATGTTCAGGCTCTCTCTTATTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAGAATGTATTTAGTTTAAATATGTTCAGGCTCTCTCTTATTATT  400

seq1  TCCTAAAACAGTACAGATGACAAATAATTGGTTAGCATTGACATTTCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAAACAGTACAGATGACAAATAATTGGTTAGCATTGACATTTCATT  450

seq1  AGATATTTCAAGTACATTAACTTAGAGATGAAGTAAAGCACATGGAAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTTCAAGTACATTAACTTAGAGATGAAGTAAAGCACATGGAAGGG  500

seq1  CTTAGATGTAGCTCAGCTGCTCGAGTTCTGCATTGATCCTCAGCACTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGATGTAGCTCAGCTGCTCGAGTTCTGCATTGATCCTCAGCACTCCA  550

seq1  TCTATGCACTGGGTGGTGGCAAGGCACATTCTTAAAATCAATCTTATCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGCACTGGGTGGTGGCAAGGCACATTCTTAAAATCAATCTTATCAC  600

seq1  CATGGAAGGTCCTCCAGAATTC  622
      ||||||||||||||||||||||
seq2  CATGGAAGGTCCTCCAGAATTC  622

seq1: chr6_109856887_109857576
seq2: B6Ng01-084D24.g_67_756

seq1  GAATTCTACATATTTTTACAAAGAGAAACAGAAGACTGCTGCCTAGAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATATTTTTACAAAGAGAAACAGAAGACTGCTGCCTAGAGTG  50

seq1  CTAGCAAGAGGGTCTCAAAGTTCACCCCCACAATGCCACACTTCCTCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAAGAGGGTCTCAAAGTTCACCCCCACAATGCCACACTTCCTCCAA  100

seq1  CAAGCCTGCATGTAGTCTAACAAGGCCCTATTTCCTAACCATGCCATTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTGCATGTAGTCTAACAAGGCCCTATTTCCTAACCATGCCATTCC  150

seq1  CTAGGCCAAATATATTCAAACCACCATAGACTTTAAGAGAAAGTTGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCCAAATATATTCAAACCACCATAGACTTTAAGAGAAAGTTGAAAA  200

seq1  ATACATGTGTTATTTTTTGGAGGGATTGTTTTATTTTCTTTAAAATTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGTGTTATTTTTTGGAGGGATTGTTTTATTTTCTTTAAAATTTTA  250

seq1  TTGCTCACACTAACACAAGCACAATGTTAAAAAATACTTTTTTCCTGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCACACTAACACAAGCACAATGTTAAAAAATACTTTTTTCCTGGAA  300

seq1  TATACATAAAAACTAAAATTAAGTGAGAGATATTCCCTTTTTATTTTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATAAAAACTAAAATTAAGTGAGAGATATTCCCTTTTTATTTTATT  350

seq1  ATTTTCACTGTCCAAATAAACCTTTGACTGCAAAGGACCCAAGATATAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCACTGTCCAAATAAACCTTTGACTGCAAAGGACCCAAGATATAAG  400

seq1  GGGTAGGTAAAATCCTAGTTCATGTTAAAATAAAAATGTTATATATTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGGTAAAATCCTAGTTCATGTTAAAATAAAAATGTTATATATTTAA  450

seq1  AACTTTATGCTTAAGTAAATGTTATGTATATTAATTGTATGCAAAAGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTATGCTTAAGTAAATGTTATGTATATTAATTGTATGCAAAAGGGG  500

seq1  TCTGCAACCCTATAGGTGGAACAGCAATACGAACTAACCAGTACCCCCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAACCCTATAGGTGGAACAGCAATACGAACTAACCAGTACCCCCGG  550

seq1  AGCTCGTGTCTCTAGCTGCATATGTATCAGAAGATGGCCTAGTCGGCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCGTGTCTCTAGCTGCATATGTATCAGAAGATGGCCTAGTCGGCCAT  600

seq1  CATTTGGAAGAGAGGCCCATTGGTCTTGCAAACTTTATATGCCTCAGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGAAGAGAGGCCCATTGGTCTTGCAAACTTTATATGCCTCAGTAC  650

seq1  GGGGGAACGCCAGGGCCAAGAAGTGGGGGGGGGGGGGGAA  690
      |||||||||||||||||||||||||||||||||||||| |
seq2  GGGGGAACGCCAGGGCCAAGAAGTGGGGGGGGGGGGGGGA  690