BAC Information

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BAC

Clone NameB6Ng01-085M03
Chromosome6 (Build37)
Map Location 8,718,209 - 8,847,783
singlet/doubletdoublet
Overlap geneIca1
Upstream geneEG667529, C1galt1, LOC100040661, Col28a1, BC020002, Rpa3, LOC100036521, LOC667028, A430035B10Rik, Glcci1
Downstream geneLOC100040238, Nxph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085M03.bB6Ng01-085M03.g
ACCDH899339DH899340
length9951,179
definitionDH899339|Mus musculus domesticus DNA, BAC clone: B6Ng01-085M03, 5' end.DH899340|Mus musculus domesticus DNA, BAC clone: B6Ng01-085M03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,846,785 - 8,847,783)(8,718,209 - 8,719,378)
sequence
gaattcagtttacaaagccttttgttttgtttgtttcttgttgttgttgt
tctcacctgtcgctaagaaaaatcattcatggcatcgtggatctgaacta
gcggagactgcatgaatcaaaaaggtaaaaaaaaaaaaaaaaaagaaaaa
agaaaagaaaaaatgctccctccccagagaggcagccagctgtctcattg
attcagctctgctcttggctgatttggaggctaccttggcatctgatcca
gagagtgcagtataataaggtacaacaatggaaactgttaccagggagaa
acagaacatctggtctggaacaaaagcagagtccattgctaagaacccgt
ctggacatcatcgttcgagcgtgaatatatgcctggtcctgtcacctgaa
agaagagctctttggagccaactcagagaagagaacacagagcaacaagg
aaaagaaaccccaaggaagaaattatgtgtcattttctcagagcttttgc
ctaaatgtagaataatttccaatcagtcttctgggagtttgatttttcaa
aacctgaaatttgaaaccagcagggatgtactggtttgtgccttttcatt
ctgcggtgtgagatttgtgggattttctgtttgtttagctttgttgggat
ggctaaagcgtcctttgccgtcctgctgttataagcagagctaatgattg
gcatgcattttgtagaactattttaactgccaaggacctactgatgcaga
cagccactcagagaccaatgagaagggagccatacacaccagccacgtgc
ctcctcccaagctgggcgtctacatggcccaggaggggctttggctgtcc
aggttgctttttaagcttataagcttattgttgttattttggttgctgta
aatactgagcaacaccttcagaaaggagaatctgacttccattgccttaa
atgctgattaaaaggggtggtgtgcgtaggggaggtgttttccct

gaattctctattacagaaaacatcgcagctataccagggggctgacattt
gcagacaataaccgtgaaggctgtaagtgggaaccacgtaagatggcgta
tcagtcaactgtgacactagaaacagggaaagagcaaagaggtggccttt
gctgatgaaaaaagtaattgctgaagcaaagagggagaggatctgctgta
taagtcatatttgcctttgactttatcagtttatatgactttcaaatgct
aactcaaatgtggcagagagattttaatctatacttatggtgctgttttg
tccaaaacattaacctgtgaaggtgaagtgtcaaggtgacaaatgaagaa
cactagcaaaaaccacaagtgtagtatcaaatgtcggcacagggcatcac
gaaatgaccaagtcagatgctattcttcggttgcatttcaattcagactc
aaatataaaactgggaaggctcttccatatgttactttaaaatgtggaaa
ccaagtctacatttttaatgaaaaactagtctatgatacgctaactttat
catataagacatgtaagaccatccaatatagcagctagtggcaactaaac
actggaaatagagctacttagaactcagatgtgttgtctgtgtaaaactc
actagttgtttcaaagacttaacaaaacaaaaagaaccaaacacagcaaa
atatctcactaataaatctctatttgtatgtttatacaaatcatttgtag
ttgcatatttacacttacatatctatttaaattttataaagttgtatttt
atattgtaatttatattgtttaataaataaaacaaatattaaatgaaata
taccatacatgttttaatatataaataatttatatttagttgtattctat
gtatgtgctatatatttacacttcatactgaattatttttatgtattgag
taatataaaagttcatctgcttcttctagttttttaatttaagaatactt
tacaacaactagactgcttcaaatcctacctgtatgttctacccacagga
ttttttttggacagccttggtcctaaggcattaaggccaattaaccaaag
aagcttaagcacaaatattccatggtctaaataatggataacctttgatt
cattaccttcctgagaaaggagaatttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_8846785_8847783
seq2: B6Ng01-085M03.b_46_1040 (reverse)

seq1  AGGGAAAACACCCCCCCTACGCACACCACCACCTTTTAATCAGCATTTTA  50
      |||||||||||| ||||||||||||||||| |||||||||||||| ||||
seq2  AGGGAAAACACCTCCCCTACGCACACCACC-CCTTTTAATCAGCA-TTTA  48

seq1  AGGCAATTGGAAGTCAGATTCTCCTTTTCTGAAGGTGTTGCTCAGTATTT  100
      |||||| ||||||||||||||||| |||||||||||||||||||||||||
seq2  AGGCAA-TGGAAGTCAGATTCTCC-TTTCTGAAGGTGTTGCTCAGTATTT  96

seq1  ACAGCAACCAAAATAACAACAATAAGCTTATAAGCTTAAAAAGCAACCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAACCAAAATAACAACAATAAGCTTATAAGCTTAAAAAGCAACCTG  146

seq1  GACAGCCAAAGCCCCTCCTGGGCCATGTAGACGCCCAGCTTGGGAGGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCAAAGCCCCTCCTGGGCCATGTAGACGCCCAGCTTGGGAGGAGG  196

seq1  CACGTGGCTGGTGTGTATGGCTCCCTTCTCATTGGTCTCTGAGTGGCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGGCTGGTGTGTATGGCTCCCTTCTCATTGGTCTCTGAGTGGCTGT  246

seq1  CTGCATCAGTAGGTCCTTGGCAGTTAAAATAGTTCTACAAAATGCATGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCAGTAGGTCCTTGGCAGTTAAAATAGTTCTACAAAATGCATGCC  296

seq1  AATCATTAGCTCTGCTTATAACAGCAGGACGGCAAAGGACGCTTTAGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTAGCTCTGCTTATAACAGCAGGACGGCAAAGGACGCTTTAGCCA  346

seq1  TCCCAACAAAGCTAAACAAACAGAAAATCCCACAAATCTCACACCGCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACAAAGCTAAACAAACAGAAAATCCCACAAATCTCACACCGCAGA  396

seq1  ATGAAAAGGCACAAACCAGTACATCCCTGCTGGTTTCAAATTTCAGGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAGGCACAAACCAGTACATCCCTGCTGGTTTCAAATTTCAGGTTT  446

seq1  TGAAAAATCAAACTCCCAGAAGACTGATTGGAAATTATTCTACATTTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATCAAACTCCCAGAAGACTGATTGGAAATTATTCTACATTTAGG  496

seq1  CAAAAGCTCTGAGAAAATGACACATAATTTCTTCCTTGGGGTTTCTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCTCTGAGAAAATGACACATAATTTCTTCCTTGGGGTTTCTTTTC  546

seq1  CTTGTTGCTCTGTGTTCTCTTCTCTGAGTTGGCTCCAAAGAGCTCTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGCTCTGTGTTCTCTTCTCTGAGTTGGCTCCAAAGAGCTCTTCTT  596

seq1  TCAGGTGACAGGACCAGGCATATATTCACGCTCGAACGATGATGTCCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGACAGGACCAGGCATATATTCACGCTCGAACGATGATGTCCAGA  646

seq1  CGGGTTCTTAGCAATGGACTCTGCTTTTGTTCCAGACCAGATGTTCTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTTCTTAGCAATGGACTCTGCTTTTGTTCCAGACCAGATGTTCTGTT  696

seq1  TCTCCCTGGTAACAGTTTCCATTGTTGTACCTTATTATACTGCACTCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTGGTAACAGTTTCCATTGTTGTACCTTATTATACTGCACTCTCT  746

seq1  GGATCAGATGCCAAGGTAGCCTCCAAATCAGCCAAGAGCAGAGCTGAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAGATGCCAAGGTAGCCTCCAAATCAGCCAAGAGCAGAGCTGAATC  796

seq1  AATGAGACAGCTGGCTGCCTCTCTGGGGAGGGAGCATTTTTTCTTTTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGACAGCTGGCTGCCTCTCTGGGGAGGGAGCATTTTTTCTTTTCTT  846

seq1  TTTTCTTTTTTTTTTTTTTTTTTACCTTTTTGATTCATGCAGTCTCCGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTTTTTTTTTTTTTTTACCTTTTTGATTCATGCAGTCTCCGCT  896

seq1  AGTTCAGATCCACGATGCCATGAATGATTTTTCTTAGCGACAGGTGAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGATCCACGATGCCATGAATGATTTTTCTTAGCGACAGGTGAGAA  946

seq1  CAACAACAACAAGAAACAAACAAAACAAAAGGCTTTGTAAACTGAATTC  999
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACAACAAGAAACAAACAAAACAAAAGGCTTTGTAAACTGAATTC  995


seq1: chr6_8718209_8719378
seq2: B6Ng01-085M03.g_69_1247

seq1  GAATTCTCTATTACAGAAAACATCGCAGCTATACCAGGGGGCTGACATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATTACAGAAAACATCGCAGCTATACCAGGGGGCTGACATTT  50

seq1  GCAGACAATAACCGTGAAGGCTGTAAGTGGGAACCACGTAAGATGGCGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACAATAACCGTGAAGGCTGTAAGTGGGAACCACGTAAGATGGCGTA  100

seq1  TCAGTCAACTGTGACACTAGAAACAGGGAAAGAGCAAAGAGGTGGCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCAACTGTGACACTAGAAACAGGGAAAGAGCAAAGAGGTGGCCTTT  150

seq1  GCTGATGAAAAAAGTAATTGCTGAAGCAAAGAGGGAGAGGATCTGCTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGAAAAAAGTAATTGCTGAAGCAAAGAGGGAGAGGATCTGCTGTA  200

seq1  TAAGTCATATTTGCCTTTGACTTTATCAGTTTATATGACTTTCAAATGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCATATTTGCCTTTGACTTTATCAGTTTATATGACTTTCAAATGCT  250

seq1  AACTCAAATGTGGCAGAGAGATTTTAATCTATACTTATGGTGCTGTTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAATGTGGCAGAGAGATTTTAATCTATACTTATGGTGCTGTTTTG  300

seq1  TCCAAAACATTAACCTGTGAAGGTGAAGTGTCAAGGTGACAAATGAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAACATTAACCTGTGAAGGTGAAGTGTCAAGGTGACAAATGAAGAA  350

seq1  CACTAGCAAAAACCACAAGTGTAGTATCAAATGTCGGCACAGGGCATCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGCAAAAACCACAAGTGTAGTATCAAATGTCGGCACAGGGCATCAC  400

seq1  GAAATGACCAAGTCAGATGCTATTCTTCGGTTGCATTTCAATTCAGACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGACCAAGTCAGATGCTATTCTTCGGTTGCATTTCAATTCAGACTC  450

seq1  AAATATAAAACTGGGAAGGCTCTTCCATATGTTACTTTAAAATGTGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAAAACTGGGAAGGCTCTTCCATATGTTACTTTAAAATGTGGAAA  500

seq1  CCAAGTCTACATTTTTAATGAAAAACTAGTCTATGATACGCTAACTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCTACATTTTTAATGAAAAACTAGTCTATGATACGCTAACTTTAT  550

seq1  CATATAAGACATGTAAGACCATCCAATATAGCAGCTAGTGGCAACTAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAAGACATGTAAGACCATCCAATATAGCAGCTAGTGGCAACTAAAC  600

seq1  ACTGGAAATAGAGCTACTTAGAACTCAGATGTGTTGTCTGTGTAAAACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAATAGAGCTACTTAGAACTCAGATGTGTTGTCTGTGTAAAACTC  650

seq1  ACTAGTTGTTTCAAAGACTTAACAAAACAAAAAGAACCAAACACAGCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTGTTTCAAAGACTTAACAAAACAAAAAGAACCAAACACAGCAAA  700

seq1  ATATCTCACTAATAAATCTCTATTTGTATGTTTATACAAATCATTTGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCACTAATAAATCTCTATTTGTATGTTTATACAAATCATTTGTAG  750

seq1  TTGCATATTTACACTTACATATCTATTTAAATTTTATAAAGTTGTATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATATTTACACTTACATATCTATTTAAATTTTATAAAGTTGTATTTT  800

seq1  ATATTGTAATTTATATTGTTTAATAAATAAAACAAATATTAAATGAAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTAATTTATATTGTTTAATAAATAAAACAAATATTAAATGAAATA  850

seq1  TACCATACATGTTTAAATATATAAATAATTTATATTTAGTTGTATTCTAT  900
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TACCATACATGTTTTAATATATAAATAATTTATATTTAGTTGTATTCTAT  900

seq1  GTATGTGCTATATATTTACACTTCATACTGAATTATTTTTATGTATTGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGCTATATATTTACACTTCATACTGAATTATTTTTATGTATTGAG  950

seq1  TAATATAAAAGTTCATCTGCTTCTTCTAGTTTTTTAAATTAAGAATACTT  1000
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TAATATAAAAGTTCATCTGCTTCTTCTAGTTTTTTAATTTAAGAATACTT  1000

seq1  TACAACAACTAGACTGCTTCAAATCCTACCTGTATG-TCTA-CCACAGGA  1048
      |||||||||||||||||||||||||||||||||||| |||| ||||||||
seq2  TACAACAACTAGACTGCTTCAAATCCTACCTGTATGTTCTACCCACAGGA  1050

seq1  TTTTTTTTGGACAGCCTTGGT-CTAAGGCATTA--GGCAAATAAGCAAAG  1095
      ||||||||||||||||||||| |||||||||||  | ||| ||| |||||
seq2  TTTTTTTTGGACAGCCTTGGTCCTAAGGCATTAAGGCCAATTAACCAAAG  1100

seq1  -AGCTTAAGCCACCAATATTCCATG--CTAAATAAATGAT-ACCTTTAAT  1141
       |||||||| ||| |||||||||||  ||||||||  ||| |||||| ||
seq2  AAGCTTAAG-CACAAATATTCCATGGTCTAAATAATGGATAACCTTTGAT  1149

seq1  CCATTACCTTCCT-AGAAATGGAG-ATTTTA  1170
       |||||||||||| ||||| |||| ||||||
seq2  TCATTACCTTCCTGAGAAA-GGAGAATTTTA  1179


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