BAC Information

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BAC

Clone NameB6Ng01-085N21
Chromosome6 (Build37)
Map Location 147,873,571 - 148,067,455
singlet/doubletdoublet
Overlap geneMlstd1
Upstream genePpfibp1, 1700034J05Rik, 2210417D09Rik, Mrps35, EG545893, Klhdc5, EG665288, LOC100039641, Pthlh, EG622129, Ccdc91, LOC100039712, LOC100039727, LOC100039736
Downstream geneErgic2, Tmtc1, 1110033J19Rik, EG622319, LOC100042984, LOC665372, Ipo8, Caprin2, EG665395, Tera, LOC667138, D030011O10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085N21.bB6Ng01-085N21.g
ACCDH899420DH899421
length1,0651,089
definitionDH899420|Mus musculus domesticus DNA, BAC clone: B6Ng01-085N21, 5' end.DH899421|Mus musculus domesticus DNA, BAC clone: B6Ng01-085N21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,873,571 - 147,874,646)(148,066,375 - 148,067,455)
sequence
gaattctcaccatggagactttaaagtctaaaagaaaacgaaactccaag
gagaattttccagagtgcctctcttaaaatgaatacatattatacaaaca
aaacaaagggagaaagcactgaatcattaaatcctgggctcatggaaaaa
cacccacctccagtcatgttgcttgactctgtcattgtagaatgaagaaa
gcggggttcatgggggaaaactctcaaaatttagagtcagcacaaggtga
ttgttggtgtttctgcctcttagcccttgccaagatcatgggacattgat
tgtctgagttttttgaaagtcttcagagaaaactaagacaaggtcttaaa
cttatttatttcactgctacaacagaataccagacaaaagcaacttaagg
gaggaggagttaattagtttattttgggcttgaagtttagagggtatagt
gtggtggaagaggaacatgaggcagctggtcacactgcttcgcagtcagg
aagcacagagacaaatcagtatttgtttctcccttttaattagttcaagg
ctccagctggtggcatggtaccaccctcttttagtgtggctctcctacct
cagttaacctcatctagatgatccctcacgtggacacacagaagcatgtc
tcctaggtgattctacatcctatcaagttgacaagatcagccatctcagc
agggtgaaagggaagtgaggaacactggggagttggtgtctgagacacag
caaatcttttaagctggggacatcctaggcagtgatgagaaagatgggat
gagagaacatttgcttttcttaggtaattcctgtgtgaaggctaaaggtg
tcagatgatacaccctgcattctggggttggttgaaagataaattggcag
aaatgagagttgagaggctttccttgtggtatttctagacatgtaatctg
gacttcagaggcaagggggaatacccaactcacttaagtgttctgaagaa
cacctcaaagaccctggaactcggagggatggtttggtctttctgtttgt
ttggggaattttgtt
gaattcaaagacacaaaggagctcagttaccctaagtaaataacttgctc
tcaaagcaactgacaaccaatgtaatttcttcaaaacagccagacaaagg
ttcacttctgatactagtaagcagctctaaggagtgagcttgcaaaaact
taagtaaacaggttctaattaagtcagaagtataactctttcatctttct
atattatccagtaacaacctgtgagaaggctacctatcttaaagttatgt
ttgagtaacaattgagtagagccttttaggcttaatttcttttcctcttc
agccacctgcacggtggacctgggcacgcaagatggggagagacacagac
ttcactgtggagttagaaccagaccttaagcagacaatgggcaaacaggc
aaaatgtcccaagtcttaaaaaaggacaaactctcaagggaagacattca
aaagtccagaggcacaggaagaagttgtccatcattactggtcagcagag
aaatgcaagttggaaccacaagatagaacccgagtccattgaggaacgct
ctgaatgacgagtgccggtaaggatgtggagaaagagagtcactgtggaa
gacactgaagcagaaggatcgtaggatcagcaagtcaacctggggcttat
atctgaagaaaatgacgacagcatgacacagaggcttctgcactccggtg
atctctgcagaagctcacagcagtcagaaaacggaagcaaccatttaccc
tgagtgtacaaaggtggaaccacactgagggggtagtaagcccaaaagga
atgagatttcctcacttgacacactatagatagggctagatatcattaag
tcaatcaggcatcaaggcttcatgatcccgctgtatgtggaacccagcaa
caggagagtgtaagggaagtcagaagaacctagggagagtggaaaggctg
gggacaggggaggttgggtcagtgggtgccatattggagtcaggtaggag
caagaagctctgggttaggttgtatagcttggtgacttgcagaataagag
ccacagactatatatcctcaccatttgaaagaaggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_147873571_147874646
seq2: B6Ng01-085N21.b_50_1114

seq1  GAATTCTCACCATGGAGACTTTAAAGTCTAAAAGAAAACGAAACTCCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCATGGAGACTTTAAAGTCTAAAAGAAAACGAAACTCCAAG  50

seq1  GAGAATTTTCCAGAGTGCCTCTCTTAAAATGAATACATATTATACAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTTTCCAGAGTGCCTCTCTTAAAATGAATACATATTATACAAACA  100

seq1  AAACAAAGGGAGAAAGCACTGAATCATTAAATCCTGGGCTCATGGAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGGGAGAAAGCACTGAATCATTAAATCCTGGGCTCATGGAAAAA  150

seq1  CACCCACCTCCAGTCATGTTGCTTGACTCTGTCATTGTAGAATGAAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACCTCCAGTCATGTTGCTTGACTCTGTCATTGTAGAATGAAGAAA  200

seq1  GCGGGGTTCATGGGGGAAAACTCTCAAAATTTAGAGTCAGCACAAGGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGGTTCATGGGGGAAAACTCTCAAAATTTAGAGTCAGCACAAGGTGA  250

seq1  TTGTTGGTGTTTCTGCCTCTTAGCCCTTGCCAAGATCATGGGACATTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGTGTTTCTGCCTCTTAGCCCTTGCCAAGATCATGGGACATTGAT  300

seq1  TGTCTGAGTTTTTTGAAAGTCTTCAGAGAAAACTAAGACAAGGTCTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAGTTTTTTGAAAGTCTTCAGAGAAAACTAAGACAAGGTCTTAAA  350

seq1  CTTATTTATTTCACTGCTACAACAGAATACCAGACAAAAGCAACTTAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTATTTCACTGCTACAACAGAATACCAGACAAAAGCAACTTAAGG  400

seq1  GAGGAGGAGTTAATTAGTTTATTTTGGGCTTGAAGTTTAGAGGGTATAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGAGTTAATTAGTTTATTTTGGGCTTGAAGTTTAGAGGGTATAGT  450

seq1  GTGGTGGAAGAGGAACATGAGGCAGCTGGTCACACTGCTTCGCAGTCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGAAGAGGAACATGAGGCAGCTGGTCACACTGCTTCGCAGTCAGG  500

seq1  AAGCACAGAGACAAATCAGTATTTGTTTCTCCCTTTTAATTAGTTCAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAGAGACAAATCAGTATTTGTTTCTCCCTTTTAATTAGTTCAAGG  550

seq1  CTCCAGCTGGTGGCATGGTACCACCCTCTTTTAGTGTGGCTCTCCTACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCTGGTGGCATGGTACCACCCTCTTTTAGTGTGGCTCTCCTACCT  600

seq1  CAGTTAACCTCATCTAGATGATCCCTCACGTGGACACACAGAAGCATGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAACCTCATCTAGATGATCCCTCACGTGGACACACAGAAGCATGTC  650

seq1  TCCTAGGTGATTCTACATCCTATCAAGTTGACAAGATCAGCCATCTCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGTGATTCTACATCCTATCAAGTTGACAAGATCAGCCATCTCAGC  700

seq1  AGGGTGAAAGGGAAGTGAGGAACACTGGGGAGTTGGTGTCTGAGACACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGAAAGGGAAGTGAGGAACACTGGGGAGTTGGTGTCTGAGACACAG  750

seq1  CAAATCTTTTAAGCTGGGGACATCCTAGGCAGTGATGAGAAAGATGGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTTTTAAGCTGGGGACATCCTAGGCAGTGATGAGAAAGATGGGAT  800

seq1  GAGAGAACATTTGCTTTTCTTAGGTAATTCCTGTGTGAAGGCTAAAGGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAACATTTGCTTTTCTTAGGTAATTCCTGTGTGAAGGCTAAAGGTG  850

seq1  TCAGATGAATACAACCCTGCATTTCTTGGGGTTGGTTGAAAAGATAAAAT  900
      ||||||| |||| ||||||||||   |||||||||||| |||||| ||||
seq2  TCAGATG-ATAC-ACCCTGCATT--CTGGGGTTGGTTG-AAAGAT-AAAT  894

seq1  TGGCAGAAATGAGAGTTGAGGAGGCTTTCCTTGTGGTATTTCTAGACCAT  950
      ||||||||||||||||||| |||||||||||||||||||||||||| |||
seq2  TGGCAGAAATGAGAGTTGA-GAGGCTTTCCTTGTGGTATTTCTAGA-CAT  942

seq1  GTAATCTGGAACTTCAGAGGCAAGGGGGGAATACCCAACCCAC-TAAGTG  999
      ||||||||| ||||||||||||| ||||||||||||||| ||| ||||||
seq2  GTAATCTGG-ACTTCAGAGGCAA-GGGGGAATACCCAACTCACTTAAGTG  990

seq1  TTCTGAAGAACA-CTCAAAGAACCTGGAACTCAGAGGGATGGGTTTGTTC  1048
      |||||||||||| |||||||| |||||||||| ||||||| |||||| ||
seq2  TTCTGAAGAACACCTCAAAGACCCTGGAACTCGGAGGGAT-GGTTTGGTC  1039

seq1  TTTTCTGTTTTGTTTGGGGATTTTTGTT  1076
       |||||| |||||||||||| |||||||
seq2  -TTTCTG-TTTGTTTGGGGAATTTTGTT  1065

seq1: chr6_148066375_148067455
seq2: B6Ng01-085N21.g_71_1159 (reverse)

seq1  ---TCCTCCTGTCAAAT-GTGAG---ATATAGTCTGTGGCTCTTA-TCTG  42
         |||| || |||||| |||||   ||||||||||||||||||| ||||
seq2  TCCTCCTTCTTTCAAATGGTGAGGATATATAGTCTGTGGCTCTTATTCTG  50

seq1  CAAGTCACC-AGCTATACAACCTTATCCCAGAGCTTCTTGCTCCTACCTG  91
      ||||||||| |||||||||||| || ||||||||||||||||||||||||
seq2  CAAGTCACCAAGCTATACAACC-TAACCCAGAGCTTCTTGCTCCTACCTG  99

seq1  ACTCCAATATGGCACCCACTGA-CCAACCTCCCCTGTCCCCAGCCTTTCC  140
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACTCCAATATGGCACCCACTGACCCAACCTCCCCTGTCCCCAGCCTTTCC  149

seq1  ACTCTCCCTAGGTTCTTCTGACTTCCCTTACACTCTCCTGTTGCTGGGTT  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCCCTAGGTTCTTCTGACTTCCCTTACACTCTCCTGTTGCTGGGTT  199

seq1  CCACATACAGCGGGATCATGAAGCCTTTGATGCCTGATTGACTTAATGAT  240
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCACATACAGCGGGATCATGAAGCC-TTGATGCCTGATTGACTTAATGAT  248

seq1  ATCTAGCCCTATCTATAGTGTGTCAAGTGAGGAAATCTCATTCCTTTTGG  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGCCCTATCTATAGTGTGTCAAGTGAGGAAATCTCATTCCTTTTGG  298

seq1  GCTTACTACCCCCTCAGTGTGGTTCCACCTTTGTACACTCAGGGTAAATG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACTACCCCCTCAGTGTGGTTCCACCTTTGTACACTCAGGGTAAATG  348

seq1  GTTGCTTCCGTTTTCTGACTGCTGTGAGCTTCTGCAGAGATCACCGGAGT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTCCGTTTTCTGACTGCTGTGAGCTTCTGCAGAGATCACCGGAGT  398

seq1  GCAGAAGCCTCTGTGTCATGCTGTCGTCATTTTCTTCAGATATAAGCCCC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGCCTCTGTGTCATGCTGTCGTCATTTTCTTCAGATATAAGCCCC  448

seq1  AGGTTGACTTGCTGATCCTACGATCCTTCTGCTTCAGTGTCTTCCACAGT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGACTTGCTGATCCTACGATCCTTCTGCTTCAGTGTCTTCCACAGT  498

seq1  GACTCTCTTTCTCCACATCCTTACCGGCACTCGTCATTCAGAGCGTTCCT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCTTTCTCCACATCCTTACCGGCACTCGTCATTCAGAGCGTTCCT  548

seq1  CAATGGACTCGGGTTCTATCTTGTGGTTCCAACTTGCATTTCTCTGCTGA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGACTCGGGTTCTATCTTGTGGTTCCAACTTGCATTTCTCTGCTGA  598

seq1  CCAGTAATGATGGACAACTTCTTCCTGTGCCTCTGGACTTTTGAATGTCT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAATGATGGACAACTTCTTCCTGTGCCTCTGGACTTTTGAATGTCT  648

seq1  TCCCTTGAGAGTTTGTCCTTTTTTAAGACTTGGGACATTTTGCCTGTTTG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGAGAGTTTGTCCTTTTTTAAGACTTGGGACATTTTGCCTGTTTG  698

seq1  CCCATTGTCTGCTTAAGGTCTGGTTCTAACTCCACAGTGAAGTCTGTGTC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTGTCTGCTTAAGGTCTGGTTCTAACTCCACAGTGAAGTCTGTGTC  748

seq1  TCTCCCCATCTTGCGTGCCCAGGTCCACCGTGCAGGTGGCTGAAGAGGAA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCATCTTGCGTGCCCAGGTCCACCGTGCAGGTGGCTGAAGAGGAA  798

seq1  AAGAAATTAAGCCTAAAAGGCTCTACTCAATTGTTACTCAAACATAACTT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTAAGCCTAAAAGGCTCTACTCAATTGTTACTCAAACATAACTT  848

seq1  TAAGATAGGTAGCCTTCTCACAGGTTGTTACTGGATAATATAGAAAGATG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATAGGTAGCCTTCTCACAGGTTGTTACTGGATAATATAGAAAGATG  898

seq1  AAAGAGTTATACTTCTGACTTAATTAGAACCTGTTTACTTAAGTTTTTGC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTTATACTTCTGACTTAATTAGAACCTGTTTACTTAAGTTTTTGC  948

seq1  AAGCTCACTCCTTAGAGCTGCTTACTAGTATCAGAAGTGAACCTTTGTCT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCACTCCTTAGAGCTGCTTACTAGTATCAGAAGTGAACCTTTGTCT  998

seq1  GGCTGTTTTGAAGAAATTACATTGGTTGTCAGTTGCTTTGAGAGCAAGTT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTTTGAAGAAATTACATTGGTTGTCAGTTGCTTTGAGAGCAAGTT  1048

seq1  ATTTACTTAGGGTAACTGAGCTCCTTTGTGTCTTTGAATTC  1081
      |||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTTAGGGTAACTGAGCTCCTTTGTGTCTTTGAATTC  1089