BAC Information

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BAC

Clone NameB6Ng01-087A08
Chromosome6 (Build37)
Map Location 112,773,809 - 112,901,249
singlet/doubletdoublet
Overlap geneSrgap3, EG666387
Upstream gene1700054K19Rik, Lmcd1, D630042P16Rik, LOC619975, Cav3, Oxtr, LOC434076, EG434077, Rad18
Downstream geneEG620161, LOC666397, Thumpd3, EG434078, Setd5, Lhfpl4, Mtmr14, Cpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2, 4931417G12Rik, 6720456B07Rik, Vhlh, Irak2, Tatdn2, Ghrl, Sec13, Atp2b2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087A08.bB6Ng01-087A08.g
ACCDH900263DH900264
length1,163495
definitionDH900263|Mus musculus domesticus DNA, BAC clone: B6Ng01-087A08, 5' end.DH900264|Mus musculus domesticus DNA, BAC clone: B6Ng01-087A08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,900,068 - 112,901,249)(112,773,809 - 112,774,309)
sequence
gaattctctggactttgcttgttgcgtttacattttttctttatttctga
gaatttcatgcatttgtataatgacatatgtgcatgtctaccccctcatt
tcttcccacgactcatctacctcccaacttcatacctttccccttccttt
ctttttgtcttcttctttctcctccttaatatagcccatttggtccaggt
agtgctgcccatagggcaaggtcatggggactgaacccagggcctgcgag
tgctagctaggcaaagcactttaccaccgagtcacacccacagttccatt
agtagcaactggctgacttagttatattacatccatttttcaaaaccaag
ttagaaggccagacttcttctttgaactgacggtggatgcattagctggt
ggcagtgtggaaaaatgtcacaaaattagtcatcctgagctggaggcagg
gagtgtttctagttgaccagaaaagtaaaattgccttaaaccaaaaccga
ctctggctactcttccttcaaacacagcactaccctcccccatcccactt
ttttttttcttcttcttttttttctaccaggaaaagaaaccggtcgggtg
agttttgtattattctgctgcaattgtaatttaagtcacaccaatggtca
tttgtgatgttttccttatatatttttaacctctagtttgtttaatggaa
aactttcacttgaagctattaagacgaacataaccatggaatgaaaagct
atgtaaagacttgagagccattactatgcttacaattcctcctttggtta
gtttcttgggtcttgatcttggtcagatctgcatttcaatgagttccaga
gtgggtgtggtttctagatagtgcctggcccgagcaaattgctctctgct
ctgtgtctctgcttccccaatttgaaaataaagttttttttacagcacca
gacctaatgaggtatagcaaggacttacctatatctatgagatctatatg
gatatttgggctgtcatctatacacaggaggccttaataaaagtaaaatt
tagggctgtgagatgcctgagtggttaggccctgctgctctttccgagga
ctgggtgggttgagtcacacccacatgtccatctcaaactctctataact
cagttcaggaaat
tcagatgcatgagctaaaggctgatggatgaatttgcaaagtataagttc
ctatatcatccttaaagtccacctacctattctacctacctaagtggatg
gagacagaactaaactcctatataaatatcacttcttaaagctacccatc
atccttaatacagaaaaagtgctattggcacatagatgaaatatatgcac
atacacacacacacacacacacacacacacaaactcacaacctggtaaat
agtttgatgattatggtgtttccagggtatgtgtgtaggagccatgagaa
ccataaggaaagctaagaagagaagaaggagctgtagccatcataaagag
cctcaagaaacctgccatggaagagaaaagaatgtggtggtgatgaaagg
tggaaagtggaggatacagaaggtggaaggcagtggatgatgaacaaggg
gaagtggatgttagagaagaagaagataatgggggtggaggatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_112900068_112901249
seq2: B6Ng01-087A08.b_41_1203 (reverse)

seq1  ATTTCCTGAAACTGGAGTTATAGAGAGTTTTGAG-TGGCCATGTGGGTGT  49
      |||||||| |||| ||||||||||||| |||||| ||| |||||||||||
seq2  ATTTCCTG-AACT-GAGTTATAGAGAG-TTTGAGATGGACATGTGGGTGT  47

seq1  GAACTTCAACCCCACCCAGGTCCTCTGGAAGAGCAGCCAGGGCTCTTAAC  99
      ||   |||| |||||||| |||||| | |||||||| |||||  | ||||
seq2  GA--CTCAA-CCCACCCA-GTCCTCGGAAAGAGCAG-CAGGG--CCTAAC  90

seq1  CACTCAGCCATCTCACCAGCCCCTAAATTTTTACTTTTTTATTAAGGCCT  149
      ||||||| ||||||| ||| ||||||| ||||||  ||||||||||||||
seq2  CACTCAGGCATCTCA-CAG-CCCTAAA-TTTTAC--TTTTATTAAGGCCT  135

seq1  CCCTGTGTATAGATGACAGCCCAAATACTCCATATAGATCTCATAGATAT  199
       |||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  -CCTGTGTATAGATGACAGCCCAAATA-TCCATATAGATCTCATAGATAT  183

seq1  AGGTAGGTCCTTGCTATACCTCATTAGGTCTGGTGCTGTAAAAAAAATCT  249
      ||||| ||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGGTAAGTCCTTGCTATACCTCATTAGGTCTGGTGCTGTAAAAAAAA-CT  232

seq1  TTATTTTCAAATTGGGGAAGCAGAGACACAGAGCAGAGAGCAATTTGCTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCAAATTGGGGAAGCAGAGACACAGAGCAGAGAGCAATTTGCTC  282

seq1  GGGGCCAAGGCACTATCTAGTAACCACACCCACTCTGGAACTCATTGAAA  349
      |||  | ||||||||||||| |||||||||||||||||||||||||||||
seq2  GGG--CCAGGCACTATCTAGAAACCACACCCACTCTGGAACTCATTGAAA  330

seq1  TGCAGATCTGACCAAGATCAAGACCCAAGAAACTAACCAAAGGAGGAATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATCTGACCAAGATCAAGACCCAAGAAACTAACCAAAGGAGGAATT  380

seq1  GTAAGCATAGTAATGGCTCTCAAGTCTTTACATAGCTTTTCATTCCATGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCATAGTAATGGCTCTCAAGTCTTTACATAGCTTTTCATTCCATGG  430

seq1  TTATGTTCGTCTTAATAGCTTCAAGTGAAAGTTTTCCATTAAACAAACTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTCGTCTTAATAGCTTCAAGTGAAAGTTTTCCATTAAACAAACTA  480

seq1  GAGGTTAAAAATATATAAGGAAAACATCACAAATGACCATTGGTGTGACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTAAAAATATATAAGGAAAACATCACAAATGACCATTGGTGTGACT  530

seq1  TAAATTACAATTGCAGCAGAATAATACAAAACTCACCCGACCGGTTTCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTACAATTGCAGCAGAATAATACAAAACTCACCCGACCGGTTTCTT  580

seq1  TTCCTGGTAGAAAAAAAAGAAGAAGAAAAAAAAAAGTGGGATGGGGGAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGTAGAAAAAAAAGAAGAAGAAAAAAAAAAGTGGGATGGGGGAGG  630

seq1  GTAGTGCTGTGTTTGAAGGAAGAGTAGCCAGAGTCGGTTTTGGTTTAAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGCTGTGTTTGAAGGAAGAGTAGCCAGAGTCGGTTTTGGTTTAAGG  680

seq1  CAATTTTACTTTTCTGGTCAACTAGAAACACTCCCTGCCTCCAGCTCAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTACTTTTCTGGTCAACTAGAAACACTCCCTGCCTCCAGCTCAGG  730

seq1  ATGACTAATTTTGTGACATTTTTCCACACTGCCACCAGCTAATGCATCCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTAATTTTGTGACATTTTTCCACACTGCCACCAGCTAATGCATCCA  780

seq1  CCGTCAGTTCAAAGAAGAAGTCTGGCCTTCTAACTTGGTTTTGAAAAATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCAGTTCAAAGAAGAAGTCTGGCCTTCTAACTTGGTTTTGAAAAATG  830

seq1  GATGTAATATAACTAAGTCAGCCAGTTGCTACTAATGGAACTGTGGGTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAATATAACTAAGTCAGCCAGTTGCTACTAATGGAACTGTGGGTGT  880

seq1  GACTCGGTGGTAAAGTGCTTTGCCTAGCTAGCACTCGCAGGCCCTGGGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCGGTGGTAAAGTGCTTTGCCTAGCTAGCACTCGCAGGCCCTGGGTT  930

seq1  CAGTCCCCATGACCTTGCCCTATGGGCAGCACTACCTGGACCAAATGGGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCCATGACCTTGCCCTATGGGCAGCACTACCTGGACCAAATGGGC  980

seq1  TATATTAAGGAGGAGAAAGAAGAAGACAAAAAGAAAGGAAGGGGAAAGGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAAGGAGGAGAAAGAAGAAGACAAAAAGAAAGGAAGGGGAAAGGT  1030

seq1  ATGAAGTTGGGAGGTAGATGAGTCGTGGGAAGAAATGAGGGGGTAGACAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTTGGGAGGTAGATGAGTCGTGGGAAGAAATGAGGGGGTAGACAT  1080

seq1  GCACATATGTCATTATACAAATGCATGAAATTCTCAGAAATAAAGAAAAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATATGTCATTATACAAATGCATGAAATTCTCAGAAATAAAGAAAAA  1130

seq1  ATGTAAACGCAACAAGCAAAGTCCAGAGAATTC  1182
      |||||||||||||||||||||||||||||||||
seq2  ATGTAAACGCAACAAGCAAAGTCCAGAGAATTC  1163

seq1: chr6_112773809_112774309
seq2: B6Ng01-087A08.g_70_570

seq1  GAATTCTCAGATGCATGAGCTAAAGGCTGATGGATGAATTTGCAAAGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGATGCATGAGCTAAAGGCTGATGGATGAATTTGCAAAGTAT  50

seq1  AAGTTCCTATATCATCCTTAAAGTCCACCTACCTATTCTACCTACCTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCTATATCATCCTTAAAGTCCACCTACCTATTCTACCTACCTAAG  100

seq1  TGGATGGAGACAGAACTAAACTCCTATATAAATATCACTTCTTAAAGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGAGACAGAACTAAACTCCTATATAAATATCACTTCTTAAAGCTA  150

seq1  CCCATCATCCTTAATACAGAAAAAGTGCTATTGGCACATAGATGAAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCATCCTTAATACAGAAAAAGTGCTATTGGCACATAGATGAAATAT  200

seq1  ATGCACATACACACACACACACACACACACACACACAAACTCACAACCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACATACACACACACACACACACACACACACACAAACTCACAACCTG  250

seq1  GTAAATAGTTTGATGATTATGGTGTTTCCAGGGTATGTGTGTAGGAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAGTTTGATGATTATGGTGTTTCCAGGGTATGTGTGTAGGAGCCA  300

seq1  TGAGAACCATAAGGAAAGCTAAGAAGAGAAGAAGGAGCTGTAGCCATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACCATAAGGAAAGCTAAGAAGAGAAGAAGGAGCTGTAGCCATCAT  350

seq1  AAAGAGCCTCAAGAAACCTGCCATGGAAGAGAAAAGAATGTGGTGGTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCCTCAAGAAACCTGCCATGGAAGAGAAAAGAATGTGGTGGTGAT  400

seq1  GAAAGGTGGAAAGTGGAGGATACAGAAGGTGGAAGGCAGTGGATGATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTGGAAAGTGGAGGATACAGAAGGTGGAAGGCAGTGGATGATGAA  450

seq1  CAAGGGGAAGTGGATGTTAGAGAAGAAGAAGATAATGGGGGTGGAGGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGGAAGTGGATGTTAGAGAAGAAGAAGATAATGGGGGTGGAGGATG  500

seq1  G  501
      |
seq2  G  501