BAC Information

Click to search

BAC

Clone NameB6Ng01-087D19
Chromosome6 (Build37)
Map Location 128,847,020 - 128,848,123
singlet/doubletsinglet
Overlap genenone
Upstream geneTspan11, Tspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i
Downstream geneClec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087D19.bB6Ng01-087D19.g
ACCDH900421DH900422
length1,2231,103
definitionDH900421|Mus musculus domesticus DNA, BAC clone: B6Ng01-087D19, 5' end.DH900422|Mus musculus domesticus DNA, BAC clone: B6Ng01-087D19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggtgagaagctggaagcaatcccactaaa
atcagggactagacaaggctacccactttctccctacctattcaacatag
tacttgaagtcctagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagatgaagtcaaaatatcactttttgcagaagatat
gatagtatatataagtgaccctaaaaattccaccagagaacacctaaacc
tgataaacagcttcggtgaagtagatggatataaaattaactcaaacaag
aaatggcttttctctacacaaagaataaacaggctgagaaagaaattagg
gaaacaacacccttctcaatagtcacaaataatataaaatgtcttggtgt
gactctaactaaggaaatgaaagatctgtatgagaagaacttcaagtctc
tgaagaaagaaattaagaatatctcagaagatggaaagatctcccatgct
catggattggcaggatcaacattgtaaaaatggctatcttgccaaaagca
atctacagattcaatgcaatccccatcaaaattccaacacaattcttcaa
tgaattagaaaaagcaatctgcaaattcatctggaataacaaaaaaccta
ggatagcaaaaactcttcttaagaataaaagaacctctggtggaatcacc
atgcctgacctaaagctttactacagagcaattgtgataaaaactgcatg
gtactggtatagtgacagacaagtagaccaatggaatagaattgaagacc
cagaaatgaacccatacacctatggtcacttgatctttgacaagggagct
aaaaccatccagtggaagaaagacagcattttcaacaaatggtgctggca
caactggttgttatcatgtagagaaatgcgaatcgatccatacttatctc
ctatactagatcaaatctaagtggattaggaactccacataaaatagaga
cactgaaactatagtgagaagtggggaaagcctcgagatatggcacaggg
aaattctgatagaacagcatgcttgtgctgtagaatcaggatggacaaat
ggacctcatgaactgcagctctgcaggcagaaccgtcatagacaaagctc
ctccacagaattggaaggaaact
gaattcttcttttgaatttatgagactacaaaaatgagtccccaacgtga
ggtgtcctttaataatgtaagcagaatggctgggatagtgagaagcatct
gcaatcccaggtacctaagggttgacacaggagggtctcaggttcacgag
tggggacagaaagcacagaaacactttcataatgatagggaagatgagaa
tctttctgtagcatcccataatttgaagaaacatattatacatgcttttc
aaaaattcaaaccaacatacagaagaatttttaaaaagtgtaaaattaag
atttactttatactctgcaatttaaaagatgagggacattggcaaaatgt
ttctccactttagttttcaatatttccaattatactgttctaagtataat
tataattacttacttatcctgttctaagtacaatgcattttataaacaga
tgccattttaatttcactattttatgccaggagccttctggcccgggcca
gggtaatggtggggtctatatagcatcactacaagatccatgtttgtgga
tctgcagagatctgctcctagggggagtgttcctacttagcaattgttat
atatgtttaatgataacaggaaaagcacattaatagcaggaatctttcct
aaaatgagtcactcatagccttgcttaatgagggctcacctgtcacagat
tatataataatccgaggcaggccacttcaggatgatcacctgctaattat
tagcttgtctcattatgactcttgacaattttattgtatttatttcccat
caaatatgagttaaactccttaggtatttaatacttaattttacactagc
atctgcattatttggtctttaaaattattaaaaatcttatagagttagct
actctgtattaatgagttctaaaagggaagaatttcacgttaaagcatct
cttgatctcttcatcctttcttctcctctgttctttttaagactatatca
acttgatatgctgtgtggggcgcggttgatatcttttgggaggcctccag
gtttttaaggagaaagatatggagaaatggaggaaaggggagaaggagag
gga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_128847020_128848123
seq2: B6Ng01-087D19.g_68_1170

seq1  GAATTCTTCTTTTGAATTTATGAGACTACAAAAATGAGTCCCCAACGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTTTGAATTTATGAGACTACAAAAATGAGTCCCCAACGTGA  50

seq1  GGTGTCCTTTAATAATGTAAGCAGAATGGCTGGGATAGTGAGAAGCATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCCTTTAATAATGTAAGCAGAATGGCTGGGATAGTGAGAAGCATCT  100

seq1  GCAATCCCAGGTACCTAAGGGTTGACACAGGAGGGTCTCAGGTTCACGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCCCAGGTACCTAAGGGTTGACACAGGAGGGTCTCAGGTTCACGAG  150

seq1  TGGGGACAGAAAGCACAGAAACACTTTCATAATGATAGGGAAGATGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACAGAAAGCACAGAAACACTTTCATAATGATAGGGAAGATGAGAA  200

seq1  TCTTTCTGTAGCATCCCATAATTTGAAGAAACATATTATACATGCTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGTAGCATCCCATAATTTGAAGAAACATATTATACATGCTTTTC  250

seq1  AAAAATTCAAACCAACATACAGAAGAATTTTTAAAAAGTGTAAAATTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTCAAACCAACATACAGAAGAATTTTTAAAAAGTGTAAAATTAAG  300

seq1  ATTTACTTTATACTCTGCAATTTAAAAGATGAGGGACATTGGCAAAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTTTATACTCTGCAATTTAAAAGATGAGGGACATTGGCAAAATGT  350

seq1  TTCTCCACTTTAGTTTTCAATATTTCCAATTATACTGTTCTAAGTATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCACTTTAGTTTTCAATATTTCCAATTATACTGTTCTAAGTATAAT  400

seq1  TATAATTACTTACTTATCCTGTTCTAAGTACAATGCATTTTATAAACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTACTTACTTATCCTGTTCTAAGTACAATGCATTTTATAAACAGA  450

seq1  TGCCATTTTAATTTCACTATTTTATGCCAGGAGCCTTCTGGCCCGGGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTTTAATTTCACTATTTTATGCCAGGAGCCTTCTGGCCCGGGCCA  500

seq1  GGGTAATGGTGGGGTCTATATAGCATCACTACAAGATCCATGTTTGTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAATGGTGGGGTCTATATAGCATCACTACAAGATCCATGTTTGTGGA  550

seq1  TCTGCAGAGATCTGCTCCTAGGGGGAGTGTTCCTACTTAGCAATTGTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGAGATCTGCTCCTAGGGGGAGTGTTCCTACTTAGCAATTGTTAT  600

seq1  ATATGTTTAATGATAACAGGAAAAGCACATTAATAGCAGGAATCTTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTTAATGATAACAGGAAAAGCACATTAATAGCAGGAATCTTTCCT  650

seq1  AAAATGAGTCACTCATAGCCTTGCTTAATGAGGGCTCACCTGTCACAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAGTCACTCATAGCCTTGCTTAATGAGGGCTCACCTGTCACAGAT  700

seq1  TATATAATAATCCGAGGCAGGCCACTTCAGGATGATCACCTGCTAATTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATAATCCGAGGCAGGCCACTTCAGGATGATCACCTGCTAATTAT  750

seq1  TAGCTTGTCTCATTATGACTCTTGACAATTTTATTGTATTTATTTCCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTGTCTCATTATGACTCTTGACAATTTTATTGTATTTATTTCCCAT  800

seq1  CAAATATGAGTTAAACTCCTTAGGTATTTAATACTTAATTTTACACTAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATGAGTTAAACTCCTTAGGTATTTAATACTTAATTTTACACTAGC  850

seq1  ATCTGCATTATTTGGTCTTTAAAATTATTAAAAATCTTATAGAGTTAGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCATTATTTGGTCTTTAAAATTATTAAAAATCTTATAGAGTTAGCT  900

seq1  ACTCTGTATTAATGAGTTCTAAAAGGGAAGAATTTCAGGTTAAAAGCATC  950
      ||||||||||||||||||||||||||||||||||||| ||| ||||||||
seq2  ACTCTGTATTAATGAGTTCTAAAAGGGAAGAATTTCACGTT-AAAGCATC  949

seq1  TCTTGATCTCTTCATCCTTTCTTCTCCCTCTTGTTCTTTTTAAAGACTAT  1000
      ||||||||||||||||||||||||| |||| |||||||||| ||||||||
seq2  TCTTGATCTCTTCATCCTTTCTTCT-CCTC-TGTTCTTTTT-AAGACTAT  996

seq1  ATCAACTTGATATGCTGTGTGGGGCGCGGTTGATATC-TATGGGAGGCCT  1049
      ||||||||||||||||||||||||||||||||||||| | ||||||||||
seq2  ATCAACTTGATATGCTGTGTGGGGCGCGGTTGATATCTTTTGGGAGGCCT  1046

seq1  CCAGGTCTTTAAGGAGAAAGATATGGAGAAATGGAGG-AAGGGGAG-AGG  1097
      |||||| |||||||||||||||||||||||||||||| |||||||| |||
seq2  CCAGGTTTTTAAGGAGAAAGATATGGAGAAATGGAGGAAAGGGGAGAAGG  1096

seq1  AGAGGGA  1104
      |||||||
seq2  AGAGGGA  1103