BAC Information

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BAC

Clone NameB6Ng01-087F14
Chromosome6 (Build37)
Map Location 112,533,246 - 112,629,665
singlet/doubletdoublet
Overlap geneEG434077, Rad18
Upstream gene1700054K19Rik, Lmcd1, D630042P16Rik, LOC619975, Cav3, Oxtr, LOC434076
Downstream geneSrgap3, EG666387, EG620161, LOC666397, Thumpd3, EG434078, Setd5, Lhfpl4, Mtmr14, Cpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2, 4931417G12Rik, 6720456B07Rik, Vhlh, Irak2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087F14.bB6Ng01-087F14.g
ACCDH900498DH900499
length513983
definitionDH900498|Mus musculus domesticus DNA, BAC clone: B6Ng01-087F14, 5' end.DH900499|Mus musculus domesticus DNA, BAC clone: B6Ng01-087F14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,629,147 - 112,629,665)(112,533,246 - 112,534,072)
sequence
acttatcttttaaactttctttttagaattttcagttggtcatgcagagg
ccttgcccaaagagagcaaggacagcttgaatttgaagaatgtaaaatct
ttcattagttcttaggatgttttaatatttttatatacatctttaaacaa
ttaaaatgtagtattttaagtattaatttaaataaaatttactgtatatt
atttatccatctgtctgtatgtatgtggtgctgagaattgaatcctagtg
cgctttttcaaaaactttttttgaataggatgttcaatagcataatgatg
ccctgcaaaaatgatgcagaagaatattttagctgaggttagtgagatgt
gccagccagtccaagcattcaggaggctaagacaggagactccgagacta
ctaaaaagtaggccagcccaggttgctcagtgtcatccagcccagagctt
ctgatttcccccttctgtgccggagagtatgtatgggatatgtatgggag
agtatgtatggga
gaattcactcctggtactgtaaacctgatagaaagcccatggctggcagc
tgagagatgaattggttaagcgtctgttcttcaagaggacctggtttgaa
ttcccagcacccacatgcacgttcacaaccacctgcagtttcaggagatc
tgaaaccttctagcttcttcagggcactgtgtgcaggcatatgtacatgt
agtactcctatatacatgtagacaaaacacccacacacataaaataacaa
gtctttttgtactggctggttttgtgtgtcaacttgacacagctggagtt
atcacagagaaaggagcttcagttgaggaaatgcctccatgagatcctgc
tgtaaggcattttctcaattagtgacaggggggagggccccttgtgagtg
gtgccatccatgggctggtagtcttgggttctataagagagcaggctgag
caagccagaggaaacaagccagtaaggaacatccctccatggcctctgca
tcagctcctgcttcctgacctgcttgagttccagtcctgacttcctttgg
tgatgaacagcaatgtggaggtgtaagctgaacaaaccctttcctcccca
acttgcttcttggtcatcatattttgtgcaggaatagaaaccctgatcaa
gacttattggctgaggaggttataacccttagtggggaaatggcaggaca
gatatgtatatatacatatacatcagtatatatacatatacacatatatt
tgtgtgttaaatagatgtgtgtttgacaaattgccttctaaacatgtaat
ttgtgcccaaaggttagtgctaacacccatttagatagagcagctttttt
tttttttttttgccatggatagtagtactacccagacttaagactgtttt
ttgtttgtttggttgttttgttttagattttttactttatatgagtacca
gaaagagggcatcaattccattatacatggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_112629147_112629665
seq2: B6Ng01-087F14.b_46_564 (reverse)

seq1  TCCCATACATACTCTCCCATACATATCCCATACATACTCTCCGGCACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATACATACTCTCCCATACATATCCCATACATACTCTCCGGCACAGA  50

seq1  AGGGGGAAATCAGAAGCTCTGGGCTGGATGACACTGAGCAACCTGGGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGAAATCAGAAGCTCTGGGCTGGATGACACTGAGCAACCTGGGCTG  100

seq1  GCCTACTTTTTAGTAGTCTCGGAGTCTCCTGTCTTAGCCTCCTGAATGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACTTTTTAGTAGTCTCGGAGTCTCCTGTCTTAGCCTCCTGAATGCT  150

seq1  TGGACTGGCTGGCACATCTCACTAACCTCAGCTAAAATATTCTTCTGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTGGCTGGCACATCTCACTAACCTCAGCTAAAATATTCTTCTGCAT  200

seq1  CATTTTTGCAGGGCATCATTATGCTATTGAACATCCTATTCAAAAAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTGCAGGGCATCATTATGCTATTGAACATCCTATTCAAAAAAAGT  250

seq1  TTTTGAAAAAGCGCACTAGGATTCAATTCTCAGCACCACATACATACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAAAGCGCACTAGGATTCAATTCTCAGCACCACATACATACAGA  300

seq1  CAGATGGATAAATAATATACAGTAAATTTTATTTAAATTAATACTTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGATAAATAATATACAGTAAATTTTATTTAAATTAATACTTAAAA  350

seq1  TACTACATTTTAATTGTTTAAAGATGTATATAAAAATATTAAAACATCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACATTTTAATTGTTTAAAGATGTATATAAAAATATTAAAACATCCT  400

seq1  AAGAACTAATGAAAGATTTTACATTCTTCAAATTCAAGCTGTCCTTGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTAATGAAAGATTTTACATTCTTCAAATTCAAGCTGTCCTTGCTC  450

seq1  TCTTTGGGCAAGGCCTCTGCATGACCAACTGAAAATTCTAAAAAGAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGGCAAGGCCTCTGCATGACCAACTGAAAATTCTAAAAAGAAAGT  500

seq1  TTAAAAGATAAGTGAATTC  519
      |||||||||||||||||||
seq2  TTAAAAGATAAGTGAATTC  519

seq1: chr6_112533246_112534072
seq2: B6Ng01-087F14.g_228_1053

seq1  TTCTAGCTTCTTCAGGGCACTGTGTGCAGGCATATGTACATGTAGTACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCTTCTTCAGGGCACTGTGTGCAGGCATATGTACATGTAGTACTC  50

seq1  CTATATACATGTAGACAAAACACCCACACACATAAAATAACAAGTCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATACATGTAGACAAAACACCCACACACATAAAATAACAAGTCTTTT  100

seq1  TGTACTGGCTGGTTTTGTGTGTCAACTTGACACAGCTGGAGTTATCACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGGCTGGTTTTGTGTGTCAACTTGACACAGCTGGAGTTATCACAG  150

seq1  AGAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCCTGCTGTAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCCTGCTGTAAGG  200

seq1  CATTTTCTCAATTAGTGACAGGGGGGAGGGCCCCTTGTGAGTGGTGCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTCAATTAGTGACAGGGGGGAGGGCCCCTTGTGAGTGGTGCCAT  250

seq1  CCATGGGCTGGTAGTCTTGGGTTCTATAAGAGAGCAGGCTGAGCAAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGGCTGGTAGTCTTGGGTTCTATAAGAGAGCAGGCTGAGCAAGCCA  300

seq1  GAGGAAACAAGCCAGTAAGGAACATCCCTCCATGGCCTCTGCATCAGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAACAAGCCAGTAAGGAACATCCCTCCATGGCCTCTGCATCAGCTC  350

seq1  CTGCTTCCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTTGGTGATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTTGGTGATGAA  400

seq1  CAGCAATGTGGAGGTGTAAGCTGAACAAACCCTTTCCTCCCCAACTTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATGTGGAGGTGTAAGCTGAACAAACCCTTTCCTCCCCAACTTGCT  450

seq1  TCTTGGTCATCATATTTTGTGCAGGAATAGAAACCCTGATCAAGACTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTCATCATATTTTGTGCAGGAATAGAAACCCTGATCAAGACTTAT  500

seq1  TGGCTGAGGAGGTTATAACCCTTAGTGGGGAAATGGCAGGACAGATATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGAGGAGGTTATAACCCTTAGTGGGGAAATGGCAGGACAGATATGT  550

seq1  ATATATACATATACATCAGTATATATACATATACACATATATTTGTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATACATATACATCAGTATATATACATATACACATATATTTGTGTGT  600

seq1  TAAATAGATGTGTGTTTGACAAATTGCCTTCTAAACATGTAATTTGTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGATGTGTGTTTGACAAATTGCCTTCTAAACATGTAATTTGTGCC  650

seq1  CAAAGGTTAGTGCTAACACCCATTTTAGATAGAGCAGCTTTTTTTTTTTT  700
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CAAAGGTTAGTGCTAACACCCA-TTTAGATAGAGCAGCTTTTTTTTTTTT  699

seq1  TTTTTGCCATGGATAGTAGTACTACCAAGACTTAAGACTGTTTTTTGTTT  750
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTTTGCCATGGATAGTAGTACTACCCAGACTTAAGACTGTTTTTTGTTT  749

seq1  GTTTGTTTGTTTGTTTTAAGATTTATTTACTTTATATGAGTACCAG-AAG  799
      ||||| ||||||  ||| |||||| ||||||||||||||||||||| |||
seq2  GTTTGGTTGTTTTGTTTTAGATTT-TTTACTTTATATGAGTACCAGAAAG  798

seq1  AGGGCATCAATTCCATTATACATGGTTG  827
      ||||||||||||||||||||||||||||
seq2  AGGGCATCAATTCCATTATACATGGTTG  826