BAC Information

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BAC

Clone NameB6Ng01-088K22
Chromosome6 (Build37)
Map Location 137,562,765 - 137,710,932
singlet/doubletdoublet
Overlap geneEps8, Strap, Dera
Upstream gene1100001H23Rik, LOC100043894, Gucy2c, Hist4h4, H2afj, Wbp11, BC049715, C030030A07Rik, Art4, Mgp, Erp27, Arhgdib, Pde6h, Rerg, Ptpro
Downstream gene9830102E05Rik, Mgst1, Lmo3, Igbp1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088K22.bB6Ng01-088K22.g
ACCDH901470DH901471
length1,2181,103
definitionDH901470|Mus musculus domesticus DNA, BAC clone: B6Ng01-088K22, 5' end.DH901471|Mus musculus domesticus DNA, BAC clone: B6Ng01-088K22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,709,710 - 137,710,932)(137,562,765 - 137,563,876)
sequence
gaattctacccaaggcgaaggcaggaggctccctggcctcattggccagg
gatctcgttggccgctagtctagctgaaatggtgagatgaagagcaacag
agggagacacccaacactgagattggagacatctagagggaagggcaggg
tagtacagagtctcagtcagagggcaagaggtgcaaagtgaccggtctgg
aaagaaaagccagagagacttgccaccagcaggacaagaggaagaaaggg
caaacccaagaatatcagcctgcatagctgcatgaacgaccactgaagga
tcacagaaccagaagaaccctcggagtctgagagactgtacacccatttc
ttttgtttcgaacataatttttagagtagctttagaatttcaaaaacagc
gagaggcacaaagatgccccacacgtccacacaagcataacttcctgcgt
tatcaacatgtgcctcagtggtagcacatctgagacttgtcttacagatc
aggaaaggacgagccagggcacaggagtccctgttcaaggtcaaagccac
ctttatccttcctgtatctgggaaccatacacagttcccatacagaaaga
aggcagcacaatagagacacagatttgcaactctcttctacactcattaa
attacagaggaaaggtccatttgttcttttgtttttttctgagacagggt
ttctctgtgtagccctggctgtcctggaactcactttgtagaccagagtg
gcctcgaactcagaaatccgcctgcctctgcctcccaagtgctgggatta
gaggtgtgcgccaccacgcccagctctgtgggatttttaatatagattcc
aggattaaagccaagctttgaggcacgggtggccagtgctgttagtcact
gggccacttcttgactcggctgtgacacctgaacgaactacacacccccc
cacacacactcatacacacacacacacacacacacacacacacacacaca
cacacacacaccacaaaccctcctgacactgtgacccggaggtgttcacc
aaaacgctcaccggagtcagattctgatcagataatttcagtgtcctcct
ttcctttacagagcaacctggccatcattaacagtgtctagagacaccct
ggcaaccaggcactcgaatttttacagaccattacagcagctactctctg
tgctccggcaatttcttt
gaattcaggcattccttgttgacatttaagacttgtcatgtcgaaggcac
ctgaacagctgtggtagcttctcttaaattctctgctccaaaagtgctta
aaccagtctctcctgcgtacccaacgccacagttcattcccaatgtcaca
gccttgggctccgtcctttcctttccttcattgctgagcagcagtcaggt
cttctcccatgatcccccagcctgtcgctccatttctcagatgcagccac
cccccacagatccaaacgacattgaaaagtacattgttgcaaacaacatc
ctgactaatgtttctggtccttattcctccgccaaggcagcctatcagct
gcttacacaacattgacactgtgaggtaggataagtaattggagatgacc
tagaggatactaaggtgtatgtgccggctacaagaaaacctcacagcgtt
ttagagaacacacttgaccttcacggacttcagtgacttcgagggaaatg
caaactgaagtagtctctgcggacactgaaagatgaattccagacgaagc
ggatccactgctgtgtagctcgccctcccagagctgagcaagtcaccatc
tttctctgaccctactaactttccactggccagggctcatttatcctggg
attcccagttccctggccacaattctctggataacgagagagcacgactt
agcaggatgcttcactgatttgttctatgaacttgttaactgatccatcc
actctctcctgagatctgtcctgtgataaaagtcacttggaagaaatact
cctaaatactctgtcaagagcagctatcagggaagccacagacctcataa
gagaattaaaagtcctgagccctgaaaagctgtcaaagggctatacacaa
gcaatgtgcataggaattttccttctcgtttgtctaattatatatcgcag
cagaacttaaataggatttggggattttaagagtctaagtaatgtgccag
tgtgaatccaaatggagacaagtggtgcttcttcctttatcagagaatct
atgtcttattcggcagaacaaattcaaagtcctactaatcatgcatcctt
cgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_137709710_137710932
seq2: B6Ng01-088K22.b_49_1266 (reverse)

seq1  AAAGAAA-TGCCGG---GCAGAGAGTAGCTGCTGGTAATTGCTCTGTAAA  46
      ||||||| ||||||    ||||||||||||||| |||| || ||||||||
seq2  AAAGAAATTGCCGGAGCACAGAGAGTAGCTGCT-GTAA-TGGTCTGTAAA  48

seq1  AGGACTCCGAGTGGCTGG-TGCCAGGGTTGTCT-TAGACACTAGTTAATG  94
         | | |||||| |||| |||||||| ||||| |||||||| |||||||
seq2  ---AATTCGAGTGCCTGGTTGCCAGGG-TGTCTCTAGACACT-GTTAATG  93

seq1  AT-GCCAGGTTTGCTCTGTAAAGG-AAGGAGGACCACTGAAATTATCTGA  142
      || |||||| |||||||||||||| |||||||| ||||||||||||||||
seq2  ATGGCCAGG-TTGCTCTGTAAAGGAAAGGAGGA-CACTGAAATTATCTGA  141

seq1  TCAGAATCCTGACTCCGGTGAGCGTTTTGGTTGAACACCTCCGGGTCACA  192
      ||||||| |||||||||||||||||||||| |||||||||||||||||||
seq2  TCAGAAT-CTGACTCCGGTGAGCGTTTTGG-TGAACACCTCCGGGTCACA  189

seq1  GTGTCAGGGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  242
      |||||| || | ||||||| ||||||||||||||||||||||||||||||
seq2  GTGTCA-GGAGGGTTTGTG-GTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  237

seq1  GTGTGTGTGTGTGTGTGTATGTGTGTGTGTGGGGGGGTGTGTAGTTCGTT  292
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTATGAGTGTGTGTGGGGGGGTGTGTAGTTCGTT  287

seq1  CAGGTGTCACAGCCGAGTCAAGAAGTGGCCCAGTGACTAACAGCACTGGC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTCACAGCCGAGTCAAGAAGTGGCCCAGTGACTAACAGCACTGGC  337

seq1  CACCCGTGCCTCAAAGCTTGGCTTTAATCCTGGAATCTATATTAAAAATC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCGTGCCTCAAAGCTTGGCTTTAATCCTGGAATCTATATTAAAAATC  387

seq1  CCACAGAGCTGGGCGTGGTGGCGCACACCTCTAATCCCAGCACTTGGGAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAGCTGGGCGTGGTGGCGCACACCTCTAATCCCAGCACTTGGGAG  437

seq1  GCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCACTCTGGTCTACAAAGTG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCACTCTGGTCTACAAAGTG  487

seq1  AGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAGAAAAAAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAGAAAAAAA  537

seq1  CAAAAGAACAAATGGACCTTTCCTCTGTAATTTAATGAGTGTAGAAGAGA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAACAAATGGACCTTTCCTCTGTAATTTAATGAGTGTAGAAGAGA  587

seq1  GTTGCAAATCTGTGTCTCTATTGTGCTGCCTTCTTTCTGTATGGGAACTG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAAATCTGTGTCTCTATTGTGCTGCCTTCTTTCTGTATGGGAACTG  637

seq1  TGTATGGTTCCCAGATACAGGAAGGATAAAGGTGGCTTTGACCTTGAACA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGTTCCCAGATACAGGAAGGATAAAGGTGGCTTTGACCTTGAACA  687

seq1  GGGACTCCTGTGCCCTGGCTCGTCCTTTCCTGATCTGTAAGACAAGTCTC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTCCTGTGCCCTGGCTCGTCCTTTCCTGATCTGTAAGACAAGTCTC  737

seq1  AGATGTGCTACCACTGAGGCACATGTTGATAACGCAGGAAGTTATGCTTG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGCTACCACTGAGGCACATGTTGATAACGCAGGAAGTTATGCTTG  787

seq1  TGTGGACGTGTGGGGCATCTTTGTGCCTCTCGCTGTTTTTGAAATTCTAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACGTGTGGGGCATCTTTGTGCCTCTCGCTGTTTTTGAAATTCTAA  837

seq1  AGCTACTCTAAAAATTATGTTCGAAACAAAAGAAATGGGTGTACAGTCTC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTCTAAAAATTATGTTCGAAACAAAAGAAATGGGTGTACAGTCTC  887

seq1  TCAGACTCCGAGGGTTCTTCTGGTTCTGTGATCCTTCAGTGGTCGTTCAT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTCCGAGGGTTCTTCTGGTTCTGTGATCCTTCAGTGGTCGTTCAT  937

seq1  GCAGCTATGCAGGCTGATATTCTTGGGTTTGCCCTTTCTTCCTCTTGTCC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTATGCAGGCTGATATTCTTGGGTTTGCCCTTTCTTCCTCTTGTCC  987

seq1  TGCTGGTGGCAAGTCTCTCTGGCTTTTCTTTCCAGACCGGTCACTTTGCA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTGGCAAGTCTCTCTGGCTTTTCTTTCCAGACCGGTCACTTTGCA  1037

seq1  CCTCTTGCCCTCTGACTGAGACTCTGTACTACCCTGCCCTTCCCTCTAGA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGCCCTCTGACTGAGACTCTGTACTACCCTGCCCTTCCCTCTAGA  1087

seq1  TGTCTCCAATCTCAGTGTTGGGTGTCTCCCTCTGTTGCTCTTCATCTCAC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCAATCTCAGTGTTGGGTGTCTCCCTCTGTTGCTCTTCATCTCAC  1137

seq1  CATTTCAGCTAGACTAGCGGCCAACGAGATCCCTGGCCAATGAGGCCAGG  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAGCTAGACTAGCGGCCAACGAGATCCCTGGCCAATGAGGCCAGG  1187

seq1  GAGCCTCCTGCCTTCGCCTTGGGTAGAATTC  1223
      |||||||||||||||||||||||||||||||
seq2  GAGCCTCCTGCCTTCGCCTTGGGTAGAATTC  1218

seq1: chr6_137562765_137563876
seq2: B6Ng01-088K22.g_68_1170

seq1  GAATTCAGGCATTCCTTGTTGACATTTAAGACTTGTCATGTCGAAGGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCATTCCTTGTTGACATTTAAGACTTGTCATGTCGAAGGCAC  50

seq1  CTGAACAGCTGTGGTAGCTTCTCTTAAATTCTCTGCTCCAAAAGTGCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACAGCTGTGGTAGCTTCTCTTAAATTCTCTGCTCCAAAAGTGCTTA  100

seq1  AACCAGTCTCTCCTGCGTACCCAACGCCACAGTTCATTCCCAATGTCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGTCTCTCCTGCGTACCCAACGCCACAGTTCATTCCCAATGTCACA  150

seq1  GCCTTGGGCTCCGTCCTTTCCTTTCCTTCATTGCTGAGCAGCAGTCAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGGCTCCGTCCTTTCCTTTCCTTCATTGCTGAGCAGCAGTCAGGT  200

seq1  CTTCTCCCATGATCCCCCAGCCTGTCGCTCCATTTCTCAGATGCAGCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCCATGATCCCCCAGCCTGTCGCTCCATTTCTCAGATGCAGCCAC  250

seq1  CCCCCACAGATCCAAACGACATTGAAAAGTACATTGTTGCAAACAACATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACAGATCCAAACGACATTGAAAAGTACATTGTTGCAAACAACATC  300

seq1  CTGACTAATGTTTCTGGTCCTTATTCCTCCGCCAAGGCAGCCTATCAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTAATGTTTCTGGTCCTTATTCCTCCGCCAAGGCAGCCTATCAGCT  350

seq1  GCTTACACAACATTGACACTGTGAGGTAGGATAAGTAATTGGAGATGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACACAACATTGACACTGTGAGGTAGGATAAGTAATTGGAGATGACC  400

seq1  TAGAGGATACTAAGGTGTATGTGCCGGCTACAAGAAAACCTCACAGCGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGATACTAAGGTGTATGTGCCGGCTACAAGAAAACCTCACAGCGTT  450

seq1  TTAGAGAACACACTTGACCTTCACGGACTTCAGTGACTTCGAGGGAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAACACACTTGACCTTCACGGACTTCAGTGACTTCGAGGGAAATG  500

seq1  CAAACTGAAGTAGTCTCTGCGGACACTGAAAGATGAATTCCAGACGAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGAAGTAGTCTCTGCGGACACTGAAAGATGAATTCCAGACGAAGC  550

seq1  GGATCCACTGCTGTGTAGCTCGCCCTCCCAGAGCTGAGCAAGTCACCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCACTGCTGTGTAGCTCGCCCTCCCAGAGCTGAGCAAGTCACCATC  600

seq1  TTTCTCTGACCCTACTAACTTTCCACTGGCCAGGGCTCATTTATCCTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGACCCTACTAACTTTCCACTGGCCAGGGCTCATTTATCCTGGG  650

seq1  ATTCCCAGTTCCCTGGCCACAATTCTCTGGATAACGAGAGAGCACGACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCAGTTCCCTGGCCACAATTCTCTGGATAACGAGAGAGCACGACTT  700

seq1  AGCAGGATGCTTCACTGATTTGTTCTATGAACTTGTTAACTGATCCATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGATGCTTCACTGATTTGTTCTATGAACTTGTTAACTGATCCATCC  750

seq1  ACTCTCTCCTGAGATCTGTCCTGTGATAAAAGTCACTTGGAAGAAATACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTCCTGAGATCTGTCCTGTGATAAAAGTCACTTGGAAGAAATACT  800

seq1  CCTAAATACTCTGTCAAGAGCAGCTATCAGGGAAGCCACAGACCTCATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATACTCTGTCAAGAGCAGCTATCAGGGAAGCCACAGACCTCATAA  850

seq1  GAGAATTAAAAGTCCTGAGCCCTGAAAAGCTGTCAAAGGGCTATACACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTAAAAGTCCTGAGCCCTGAAAAGCTGTCAAAGGGCTATACACAA  900

seq1  GCAATGTGCATAGGAATTTTCCTTCTCGTTTGTCTTAAATTATATATCGC  950
      |||||||||||||||||||||||||||||||||||  |||||||||||||
seq2  GCAATGTGCATAGGAATTTTCCTTCTCGTTTGTCT--AATTATATATCGC  948

seq1  AGCAAGAACTTTAAATAGAATTTGGGATTTTAAAGAGTCTAAGTAAATGT  1000
      ||| ||||| |||||||| |||||||  ||| |||||||||||| |||||
seq2  AGC-AGAAC-TTAAATAGGATTTGGGGATTTTAAGAGTCTAAGT-AATGT  995

seq1  GCCCAGTGTGAAATCCAAAT-GAGACAAAGTGGTGCCTTCTCCCTTTATC  1049
      | |||||||| ||||||||| ||||| |||||||| ||||| ||||||||
seq2  G-CCAGTGTG-AATCCAAATGGAGAC-AAGTGGTG-CTTCTTCCTTTATC  1041

seq1  AGAG-ATCTATGGTTCTTA-TCGGCAGACAAAATTCAAAAGTCCTACTTA  1097
      |||| |||||||  ||||| ||||||||  |||||| |||||||||| ||
seq2  AGAGAATCTATG--TCTTATTCGGCAGAACAAATTC-AAAGTCCTAC-TA  1087

seq1  ATCATGCAT-CTTCGC  1112
      ||||||||| ||||||
seq2  ATCATGCATCCTTCGC  1103