BAC Information

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BAC

Clone NameB6Ng01-088L11
Chromosome6 (Build37)12 (Build37)
Map Location 120,114,877 - 120,115,7423,851,940 - 3,852,366
singlet/doubletsingletsinglet
Overlap geneNinj2
Upstream geneCacna1c, Dcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14, Erc1, LOC666887, Rad52, Wnk1, EG406236
Downstream geneB4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid, Mical3, LOC100043793, Minpp1-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088L11.bB6Ng01-088L11.g
ACCDH901496DH901497
length868335
definitionDH901496|Mus musculus domesticus DNA, BAC clone: B6Ng01-088L11, 5' end.DH901497|Mus musculus domesticus DNA, BAC clone: B6Ng01-088L11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(120,114,877 - 120,115,742)(3,851,940 - 3,852,366)
sequence
gaattcagatctgagtgacagcagccaaggtgccccagctgctcaggagg
ctggaggagacattaatgtaaatctggatgccaacttgcttctggcacat
tccccaagactcagacactaaccagcgtaggcaggtggatgaggaggtgg
gaatgatgcctgaggtatataagtgttggcaccggagcatgctccagtca
tggtaatgcaaaccctgatgctagtaagactgggaaatgagattccatcc
agcatgctggatgcagagccctcactcttcataccttagtggacttcaca
gggtctagttcatctaactctgctgaggtcagggctcagatctcaatgaa
gctgtctgtaatcatgctgtgagctcctctctgaaccatggatttaggat
ttatgtctgggtggagctactcagccccacctactagaccctgccaggct
cagaggtcatataaagtccagcagagcttgatatagggccaatgccgcct
ggttaggagatcaccattcctagcactgggatgccccacaaatatctact
tagttgtgttattatcatctctttttgttttaagatttatttatgtatgt
gagtacacggcagctgtcttcagacacaccagaaaaagacatcagatccc
attacagatggttgtaagccaccatgtggttgctggaaattgaactcagg
acctctagaagagtagttagtgctcttaaccgcttgagccatctctccag
ccctattatcctctctctctttttttttttttttttttttaaaggggagc
tcttccttcctctttttttttttttaaggatttatttaattatttaattg
gttggttatttattatta
cagaggagtttccctagcccatacactttattttaacccaagcataagat
tatcatcccttctccctttcttttgttcttattgtttttagtatgtactt
atgtacttgttgttttaaagatttatttatttactccggcggtggtggcg
ctcgcctttaatcccagttggaggccagcctggtctacaaagtgagttcc
aggatagccagggctatatagagaaaccctgtctcaaaaaaacaaacaag
tatttatttatttatttatttatttatttatttatttaatgtatgtgagt
acattgtcactgtcttcagacacaccagaagaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_120114877_120115742
seq2: B6Ng01-088L11.b_50_917

seq1  GAATTCAGATCTGAGTGACAGCAGCCAAGGTGCCCCAGCTGCTCAGGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATCTGAGTGACAGCAGCCAAGGTGCCCCAGCTGCTCAGGAGG  50

seq1  CTGGAGGAGACATTAATGTAAATCTGGATGCCAACTTGCTTCTGGCACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGAGACATTAATGTAAATCTGGATGCCAACTTGCTTCTGGCACAT  100

seq1  TCCCCAAGACTCAGACACTAACCAGCGTAGGCAGGTGGATGAGGAGGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAGACTCAGACACTAACCAGCGTAGGCAGGTGGATGAGGAGGTGG  150

seq1  GAATGATGCCTGAGGTATATAAGTGTTGGCACCGGAGCATGCTCCAGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGATGCCTGAGGTATATAAGTGTTGGCACCGGAGCATGCTCCAGTCA  200

seq1  TGGTAATGCAAACCCTGATGCTAGTAAGACTGGGAAATGAGATTCCATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATGCAAACCCTGATGCTAGTAAGACTGGGAAATGAGATTCCATCC  250

seq1  AGCATGCTGGATGCAGAGCCCTCACTCTTCATACCTTAGTGGACTTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCTGGATGCAGAGCCCTCACTCTTCATACCTTAGTGGACTTCACA  300

seq1  GGGTCTAGTTCATCTAACTCTGCTGAGGTCAGGGCTCAGATCTCAATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTAGTTCATCTAACTCTGCTGAGGTCAGGGCTCAGATCTCAATGAA  350

seq1  GCTGTCTGTAATCATGCTGTGAGCTCCTCTCTGAACCATGGATTTAGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTGTAATCATGCTGTGAGCTCCTCTCTGAACCATGGATTTAGGAT  400

seq1  TTATGTCTGGGTGGAGCTACTCAGCCCCACCTACTAGACCCTGCCAGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTCTGGGTGGAGCTACTCAGCCCCACCTACTAGACCCTGCCAGGCT  450

seq1  CAGAGGTCATATAAAGTCCAGCAGAGCTTGATATAGGGCCAATGCCGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTCATATAAAGTCCAGCAGAGCTTGATATAGGGCCAATGCCGCCT  500

seq1  GGTTAGGAGATCACCATTCCTAGCACTGGGATGCCCCACAAATATCTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGGAGATCACCATTCCTAGCACTGGGATGCCCCACAAATATCTACT  550

seq1  TAGTTGTGTTATTATCATCTCTTTTTGTTTTAAGATTTATTTATGTATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGTGTTATTATCATCTCTTTTTGTTTTAAGATTTATTTATGTATGT  600

seq1  GAGTACACGGCAGCTGTCTTCAGACACACCAGAAAAAGACATCAGATCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACACGGCAGCTGTCTTCAGACACACCAGAAAAAGACATCAGATCCC  650

seq1  ATTACAGATGGTTGTAAGCCACCATGTGGTTGCTGGAAATTGAACTCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGATGGTTGTAAGCCACCATGTGGTTGCTGGAAATTGAACTCAGG  700

seq1  ACCTCTAGAAGAGTAGTTAGTGCTCTTAACCGCTTGAGCCATCTCTCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTAGAAGAGTAGTTAGTGCTCTTAACCGCTTGAGCCATCTCTCCAG  750

seq1  CCCTATTATCCTCTCTCTCTTTTTTTTTTTTTTTTTTTTTAAA-GGGAGC  799
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCCTATTATCCTCTCTCTCTTTTTTTTTTTTTTTTTTTTTAAAGGGGAGC  800

seq1  TC-TCCTT-CTCTTTTTTTTTTTTTAAAGATTTTTTTATTTATTTATTTG  847
      || ||||| |||||||||||||||||| ||||| |||| ||||||| |||
seq2  TCTTCCTTCCTCTTTTTTTTTTTTTAAGGATTTATTTAATTATTTAATTG  850

seq1  TTTGTTTATTTATTTATTA  866
       ||| ||||||| ||||||
seq2  GTTGGTTATTTA-TTATTA  868

seq1: chr12_3851940_3852366
seq2: B6Ng01-088L11.g_212_405

seq1  GTGGTGGAGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGG  50
      ||||||| || |||||||||||||                          
seq2  GTGGTGGCGCTCGCCTTTAATCCC--------------------------  24

seq1  ATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGC  100
             |||| |||||||||||||||||||||||||||||||||| |||
seq2  -------AGTTGGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGATAGC  67

seq1  CAGGGCTACACAGAGAAACCCTGTCTCAAAAAAACAAAAACAAAAACAAG  150
      |||||||| | ||||||||||||||||||||||||        |||||||
seq2  CAGGGCTATATAGAGAAACCCTGTCTCAAAAAAAC--------AAACAAG  109

seq1  TTCAAGGTATTCTCTGTTAAATAGTGAGTTTGAGGCCAGCCTTGGCTATG  200
      |   |  ||||                                   ||| 
seq2  T---ATTTATT-----------------------------------TATT  121

seq1  TGAGACCCAGTCTAAAGAGTTAAATTTAAAAAAAAAATTTTAAAGATTTA  250
      |                      |||||          ||||   |||||
seq2  T----------------------ATTTA----------TTTATTTATTTA  139

seq1  TTTATTTTATGTA--TGAGTACA----CACTTTAGTTGTAC--------A  286
      ||||||| |||||  ||||||||    |||| |  |   ||        |
seq2  TTTATTTAATGTATGTGAGTACATTGTCACTGTCTTCAGACACACCAGAA  189

seq1  GATGGTTGTGAGCCTTCATGTGATTGTTGGGAATTGAACTTAGGACCTCT  336
      || ||                                             
seq2  GAGGG---------------------------------------------  194

seq1  GCTTGCTCTAGCCAACCCAACTTGCTCCGGCCAAAGATTTATTTATTAGT  386
                                                        
seq2  --------------------------------------------------  194

seq1  ATAAGTTCACTGTAGTTGTCTTCAAACACACCAGAAGAGGG  427
                                               
seq2  -----------------------------------------  194