BAC Information

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BAC

Clone NameB6Ng01-088N11
Chromosome6 (Build37)
Map Location 107,336,061 - 107,529,023
singlet/doubletdoublet
Overlap geneLrrn1
Upstream geneCntn4, Il5ra, Trnt1, Crbn, Ppia-ps6_1128.1
Downstream geneSetmar, Sumf1, LOC100043718, Itpr1, LOC677205
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088N11.bB6Ng01-088N11.g
ACCDH901586DH901587
length6011,092
definitionDH901586|Mus musculus domesticus DNA, BAC clone: B6Ng01-088N11, 5' end.DH901587|Mus musculus domesticus DNA, BAC clone: B6Ng01-088N11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,528,423 - 107,529,023)(107,336,061 - 107,337,183)
sequence
gaattcatactaatcatctttaaagttcaggaaatgctggcagcacgaag
acggctggctgttttaaataagactttcagggtttgtggaactgtaagca
caccccacagaaaccataagggatgcagatttatcttctgagggagtttt
catgtctatagaatttagcaagacccgcagtatggtccagaagagtaagc
tgtttggctgtgaatttggaacatcttggggcttgagcaccaatctgaat
agtccctgttccccacaagtggtatgacctctgcagaccatgaaggtgct
ctagatgaatgattcctacgacatgggaatagttcaggcagaattttcaa
gtcatcaaaatggaggggctgagggagcaagtaaattcaagcactgtagc
atgtctccccaatcaaccaaatgccagcatgttcgctgcaactgtctaaa
atatctgttatcagacacaacatcaaatagaaagatacatctggttctag
caaagttttgttattcactgcaaagccgaagtcatgagtggcttcaccca
ttcaacaaactccttggcttttggattctctatgtgtattcatgtgtgtg
t
gaattcttttactgttgctgcctgtgacactcatttatcaaacattattt
taataactcagtttttccccccttcctatgctttttgtgaaccgtaattg
tctagactttaccttcctggaagacaaacgtcatacttatttattgttgt
ttgagggcctccaccaatggcttacaatcttgttgccaatctgctcccac
ccagtgtttccaagctatacctggggactcctaaatgctatggtctagaa
agccacaacttgcttctgcctgatcctgtcgtcctaggaaattcagagcc
tctcccgagtataaagaaattctcatggaaatggcctgggccattccttc
tccataatcccctcctttaaaagtcttaatgggccccaggacagccactg
tgaacaccatctcagtaaatcagtcagccagagatgtgcggagggaagcc
acacaccaacagggcagcaattcagttatgctccgttctgcccagaagca
agaggcatactgagtttccatgccatgcggggaaaggaacagcaagataa
aacctggaaagaaaacaatgggtctgggggaagaaaaaaaaaacctgcta
tatctaagtggatgccaaatgcatgacttaggataaaaatgtttaagaat
tgaagctgagacttcaaaagatggacctgaaatttcacagcgcagagagt
tactacagagtcactaataaagacatttcttacactgccacaatatgttc
ttctctttggtctttaagaactctggaatcatcagatatggtgatgtatg
cttttaatcccagcattggtgagtcagaggcggatgaatctctatgagtt
tgaggccaggcagagctatctcagtaagtgctgtctaaacaacagcaaca
aacccattggaatcaaagctgatgaatttataatatgaagatgactttat
tctaaatatttcttctttgaatacaggaaagggcagatctgagcagagac
aacgagagaatctgatgatgggatctcatactttcatgtcttttttctga
aagaaggaaaataattcttggctaggtgatcagtctatgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_107528423_107529023
seq2: B6Ng01-088N11.b_48_648 (reverse)

seq1  ACACACACATGAATACACATAGAGAATCCAAAAGCCAAGGAGTTTGTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACATGAATACACATAGAGAATCCAAAAGCCAAGGAGTTTGTTGA  50

seq1  ATGGGTGAAGCCACTCATGACTTCGGCTTTGCAGTGAATAACAAAACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTGAAGCCACTCATGACTTCGGCTTTGCAGTGAATAACAAAACTTT  100

seq1  GCTAGAACCAGATGTATCTTTCTATTTGATGTTGTGTCTGATAACAGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAACCAGATGTATCTTTCTATTTGATGTTGTGTCTGATAACAGATA  150

seq1  TTTTAGACAGTTGCAGCGAACATGCTGGCATTTGGTTGATTGGGGAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGACAGTTGCAGCGAACATGCTGGCATTTGGTTGATTGGGGAGACA  200

seq1  TGCTACAGTGCTTGAATTTACTTGCTCCCTCAGCCCCTCCATTTTGATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACAGTGCTTGAATTTACTTGCTCCCTCAGCCCCTCCATTTTGATGA  250

seq1  CTTGAAAATTCTGCCTGAACTATTCCCATGTCGTAGGAATCATTCATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAATTCTGCCTGAACTATTCCCATGTCGTAGGAATCATTCATCTA  300

seq1  GAGCACCTTCATGGTCTGCAGAGGTCATACCACTTGTGGGGAACAGGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACCTTCATGGTCTGCAGAGGTCATACCACTTGTGGGGAACAGGGAC  350

seq1  TATTCAGATTGGTGCTCAAGCCCCAAGATGTTCCAAATTCACAGCCAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGATTGGTGCTCAAGCCCCAAGATGTTCCAAATTCACAGCCAAAC  400

seq1  AGCTTACTCTTCTGGACCATACTGCGGGTCTTGCTAAATTCTATAGACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTACTCTTCTGGACCATACTGCGGGTCTTGCTAAATTCTATAGACAT  450

seq1  GAAAACTCCCTCAGAAGATAAATCTGCATCCCTTATGGTTTCTGTGGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTCCCTCAGAAGATAAATCTGCATCCCTTATGGTTTCTGTGGGGT  500

seq1  GTGCTTACAGTTCCACAAACCCTGAAAGTCTTATTTAAAACAGCCAGCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTACAGTTCCACAAACCCTGAAAGTCTTATTTAAAACAGCCAGCCG  550

seq1  TCTTCGTGCTGCCAGCATTTCCTGAACTTTAAAGATGATTAGTATGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCGTGCTGCCAGCATTTCCTGAACTTTAAAGATGATTAGTATGAATT  600

seq1  C  601
      |
seq2  C  601

seq1: chr6_107336061_107337183
seq2: B6Ng01-088N11.g_68_1159

seq1  GAATTCTTTTACTGTTGCTGCCTGTGACACTCATTTATCAAACATTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTACTGTTGCTGCCTGTGACACTCATTTATCAAACATTATTT  50

seq1  TAATAACTCAGTTTTTCCCCCCTTCCTATGCTTTTTGTGAACCGTAATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACTCAGTTTTTCCCCCCTTCCTATGCTTTTTGTGAACCGTAATTG  100

seq1  TCTAGACTTTACCTTCCTGGAAGACAAACGTCATACTTATTTATTGTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGACTTTACCTTCCTGGAAGACAAACGTCATACTTATTTATTGTTGT  150

seq1  TTGAGGGCCTCCACCAATGGCTTACAATCTTGTTGCCAATCTGCTCCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGCCTCCACCAATGGCTTACAATCTTGTTGCCAATCTGCTCCCAC  200

seq1  CCAGTGTTTCCAAGCTATACCTGGGGACTCCTAAATGCTATGGTCTAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTTTCCAAGCTATACCTGGGGACTCCTAAATGCTATGGTCTAGAA  250

seq1  AGCCACAACTTGCTTCTGCCTGATCCTGTCGTCCTAGGAAATTCAGAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAACTTGCTTCTGCCTGATCCTGTCGTCCTAGGAAATTCAGAGCC  300

seq1  TCTCCCGAGTATAAAGAAATTCTCATGGAAATGGCCTGGGCCATTCCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCGAGTATAAAGAAATTCTCATGGAAATGGCCTGGGCCATTCCTTC  350

seq1  TCCATAATCCCCTCCTTTAAAAGTCTTAATGGGCCCCAGGACAGCCACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAATCCCCTCCTTTAAAAGTCTTAATGGGCCCCAGGACAGCCACTG  400

seq1  TGAACACCATCTCAGTAAATCAGTCAGCCAGAGATGTGCGGAGGGAAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACCATCTCAGTAAATCAGTCAGCCAGAGATGTGCGGAGGGAAGCC  450

seq1  ACACACCAACAGGGCAGCAATTCAGTTATGCTCCGTTCTGCCCAGAAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCAACAGGGCAGCAATTCAGTTATGCTCCGTTCTGCCCAGAAGCA  500

seq1  AGAGGCATACTGAGTTTCCATGCCATGCGGGGAAAGGAACAGCAAGATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCATACTGAGTTTCCATGCCATGCGGGGAAAGGAACAGCAAGATAA  550

seq1  AACCTGGAAAGAAAACAATGGGTCTGGGGGAAGAAAAAAAAAACCTGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGAAAGAAAACAATGGGTCTGGGGGAAGAAAAAAAAAACCTGCTA  600

seq1  TATCTAAGTGGATGCCAAATGCATGACTTAGGATAAAAATGTTTAAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAAGTGGATGCCAAATGCATGACTTAGGATAAAAATGTTTAAGAAT  650

seq1  TGAAGCTGAGACTTCAAAAGATGGACCTGAAATTTCACAGCGCAGAGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTGAGACTTCAAAAGATGGACCTGAAATTTCACAGCGCAGAGAGT  700

seq1  TACTACAGAGTCACTAATAAAGACATTTCTTACACTGCCACAATATGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACAGAGTCACTAATAAAGACATTTCTTACACTGCCACAATATGTTC  750

seq1  TTCTCTTTGGTCTTTAAGAACTCTGGAATCATCAGATATGGTGATGTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTGGTCTTTAAGAACTCTGGAATCATCAGATATGGTGATGTATG  800

seq1  CTTTTAATCCCAGCATTGGTGAGTCAGAGGCGGATGAATCTCTATGAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATCCCAGCATTGGTGAGTCAGAGGCGGATGAATCTCTATGAGTT  850

seq1  TGAGGCCAGGCAGAGCTATCTCAGTAAGGTGCTGTCTAAAACAACAGCAA  900
      ||||||||||||||||||||||||||| ||||||||| ||||||||||||
seq2  TGAGGCCAGGCAGAGCTATCTCAGTAA-GTGCTGTCT-AAACAACAGCAA  898

seq1  CAAAACCCATTGGAATCAAAGCTGATGAATTTAATTAATATGAAAGATGA  950
      | |||||||||||||||||||||||||||||||  ||||||| |||||||
seq2  C-AAACCCATTGGAATCAAAGCTGATGAATTTA--TAATATG-AAGATGA  944

seq1  CCTTTATTCTAAATATTTCCTTCTTTGAAATACAGGAAAGGGCAGAACCT  1000
       ||||||||||||||||| |||||||| ||||||||||||||||| | ||
seq2  -CTTTATTCTAAATATTT-CTTCTTTG-AATACAGGAAAGGGCAG-ATCT  990

seq1  GAAGCAGAGACAAACCGAGGAGATACTTGGATAGATGGGATCTCATAACT  1050
      | |||||||||||  ||| ||||  ||  ||| ||||||||||||| |||
seq2  G-AGCAGAGACAA--CGA-GAGAATCT--GAT-GATGGGATCTCAT-ACT  1032

seq1  TTTCCAATGTCCTTTTTTTCTGAAAAGAAGGGACAATAAATTTCTTGTGC  1100
      ||    |||||  ||||||||| |||||| ||| |||||  |||||| ||
seq2  TT---CATGTC--TTTTTTCTG-AAAGAA-GGAAAATAA--TTCTTG-GC  1072

seq1  CAAAGTTGATCAGTCTAATGCAA  1123
         || |||||||||| ||||||
seq2  --TAGGTGATCAGTCT-ATGCAA  1092