BAC Information

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BAC

Clone NameB6Ng01-089E23
Chromosome6 (Build37)
Map Location 18,086,396 - 18,087,610
singlet/doubletsinglet
Overlap genenone
Upstream geneEG232599, Cav2, Cav1, Met, Capza2, St7, Wnt2, Asz1
Downstream geneLOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7, LOC626180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089E23.bB6Ng01-089E23.g
ACCDH901921DH901922
length4501,203
definitionDH901921|Mus musculus domesticus DNA, BAC clone: B6Ng01-089E23, 5' end.DH901922|Mus musculus domesticus DNA, BAC clone: B6Ng01-089E23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
catccagtctcacttgaaatctgggagaaactctgaggaaaaatagcatt
gctggttttgactttgagcagtataagaacgtatgcatgtctatgcatac
acaatggtaagggtatacacttgtttgaaagccaaaacaaagccatagta
gttaacaaagtcaatcctcacgtactttataagtttcattgttgggccgg
gagagttcagtcggtaatatgtctgctacacaaacataagaacctgaggt
cagattccaagcacacatgaaaaactttgggcctgtactgaatgtctgta
atgctagagatgaagacacatgggtcccggggcctccctggccagccagt
ccagctgaaccagcaaatgccaggttctgtgagaaactcatgagagagag
agaagggaaggaagaaagggaggaaggaagaaaagagggatggtgggggg

gaattcattctttaataggaggaaaaactagaaagcattcttagagttgc
taattctattcttcttgtattcaataagaaaagaatacatttagcttagg
tgagtcatgaacttcactgtatgtattgagcagtaggagaaattagccta
tcatttagttctcttagaataaatgcttcctggtacagtaaactggggtt
ggatttctgatgtgtaacttaaatgtgctagtataagatatttttaaaat
aagagaaacaagctggatgagaaaaaaattttttacctttgttgaaaaag
cctcttgctcttaaaagagaatttttaattattgaccggaaatacgtctc
cccatggcatatactgaagatgagcttatatagctcgggacacaggtgtg
aacttgaggagggatcttgaagactgggtgaacaggaaatcttggtcaga
cagagtgatagagcttcgggcccatgtgtaatttctctgaactatttctt
cctgttgtactttgtgggtgagcctgtttagtccagttttacctttctta
aaatacaacatgattttatttccttgctctaagccctaggaagacagttg
caaactttttatgtttttattttcagatttttgagtttatgatgatacaa
aagggcgcttgctattcaagagaaagcattttgaagtttgacttgcttat
tctgttaatatgcagaaaggctccctttgtgccaggtacccaattgatac
tttaaagtaaattctgttgctaaactatgatgtctagcaacttaggtgta
ttaaatgtacatttaaaaaatattttatttgttttatgtgtataattata
ctgtagttgtttcagacacaccagaatggggcatcagatcacattacaga
tggttgtaagctaccatgtggttgctgggaattgaacccaggacctctag
aaagctgccagtgctcttaaccggggagccatctctccagcccctttaat
gtgcatctttatttgatatgttttctatttaagtgactttatcaagattt
gggcttatcagaaaagctagggagctttactgacttcttagcagctcata
ggtatggctacttatctgccaggttcttctggaaagaccagtcagtcgtt
tttcataaccatctctctgttacgggtcctattatccactcttcatataa
gac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18086396_18087610
seq2: B6Ng01-089E23.g_69_1271

seq1  GAATTCATTCTTTAATAGGAGGAAAAACTAGAAAGCATTCTTAGAGTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTTTAATAGGAGGAAAAACTAGAAAGCATTCTTAGAGTTGC  50

seq1  TAATTCTATTCTTCTTGTATTCAATAAGAAAAGAATACATTTAGCTTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTATTCTTCTTGTATTCAATAAGAAAAGAATACATTTAGCTTAGG  100

seq1  TGAGTCATGAACTTCACTGTATGTATTGAGCAGTAGGAGAAATTAGCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCATGAACTTCACTGTATGTATTGAGCAGTAGGAGAAATTAGCCTA  150

seq1  TCATTTAGTTCTCTTAGAATAAATGCTTCCTGGTACAGTAAACTGGGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAGTTCTCTTAGAATAAATGCTTCCTGGTACAGTAAACTGGGGTT  200

seq1  GGATTTCTGATGTGTAACTTAAATGTGCTAGTATAAGATATTTTTAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCTGATGTGTAACTTAAATGTGCTAGTATAAGATATTTTTAAAAT  250

seq1  AAGAGAAACAAGCTGGATGAGAAAAAAATTTTTTACCTTTGTTGAAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAACAAGCTGGATGAGAAAAAAATTTTTTACCTTTGTTGAAAAAG  300

seq1  CCTCTTGCTCTTAAAAGAGAATTTTTAATTATTGACCGGAAATACGTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGCTCTTAAAAGAGAATTTTTAATTATTGACCGGAAATACGTCTC  350

seq1  CCCATGGCATATACTGAAGATGAGCTTATATAGCTCGGGACACAGGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGCATATACTGAAGATGAGCTTATATAGCTCGGGACACAGGTGTG  400

seq1  AACTTGAGGAGGGATCTTGAAGACTGGGTGAACAGGAAATCTTGGTCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGAGGAGGGATCTTGAAGACTGGGTGAACAGGAAATCTTGGTCAGA  450

seq1  CAGAGTGATAGAGCTTCGGGCCCATGTGTAATTTCTCTGAACTATTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGATAGAGCTTCGGGCCCATGTGTAATTTCTCTGAACTATTTCTT  500

seq1  CCTGTTGTACTTTGTGGGTGAGCCTGTTTAGTCCAGTTTTACCTTTCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGTACTTTGTGGGTGAGCCTGTTTAGTCCAGTTTTACCTTTCTTA  550

seq1  AAATACAACATGATTTTATTTCCTTGCTCTAAGCCCTAGGAAGACAGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAACATGATTTTATTTCCTTGCTCTAAGCCCTAGGAAGACAGTTG  600

seq1  CAAACTTTTTATGTTTTTATTTTCAGATTTTTGAGTTTATGATGATACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTTTTATGTTTTTATTTTCAGATTTTTGAGTTTATGATGATACAA  650

seq1  AAGGGCGCTTGCTATTCAAGAGAAAGCATTTTGAAGTTTGACTTGCTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCGCTTGCTATTCAAGAGAAAGCATTTTGAAGTTTGACTTGCTTAT  700

seq1  TCTGTTAATATGCAGAAAGGCTCCCTTTGTGCCAGGTACCCAATTGATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTAATATGCAGAAAGGCTCCCTTTGTGCCAGGTACCCAATTGATAC  750

seq1  TTTAAAGTAAATTCTGTTGCTAAACTATGATGTCTAGCAACTTAGGTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGTAAATTCTGTTGCTAAACTATGATGTCTAGCAACTTAGGTGTA  800

seq1  TTAAATGTACATTTAAAAAATATTTTATTTGTTTTATGTGTATAATTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGTACATTTAAAAAATATTTTATTTGTTTTATGTGTATAATTATA  850

seq1  CTGTAGTTGTTTTCAGACACACCAGAAGGGGGCATCAGATCACATTACAG  900
      ||||||||| ||||||||||||||||| ||||||||||||||||||||||
seq2  CTGTAGTTG-TTTCAGACACACCAGAATGGGGCATCAGATCACATTACAG  899

seq1  ATGGTTGTAAGCTACCATGTGGTTGCTGGGAATTGAACCCAGGACCTCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGTAAGCTACCATGTGGTTGCTGGGAATTGAACCCAGGACCTCTA  949

seq1  GAAAAGCTGCCAGTGCTCTTAACCGGGGAGCCATCTCTCCAGCCCCTTAA  1000
      | |||||||||||||||||||||||||||||||||||||||||||||| |
seq2  G-AAAGCTGCCAGTGCTCTTAACCGGGGAGCCATCTCTCCAGCCCCTTTA  998

seq1  ATGTGCATTCTTTATTTGGATTATG-TTTCTATTTAAGGTGACTTTATCC  1049
      ||||||| ||||||||||   |||| ||||||||||| ||||||||||| 
seq2  ATGTGCA-TCTTTATTTG--ATATGTTTTCTATTTAA-GTGACTTTATCA  1044

seq1  AGATTTGGCCTCATCAG-AAAGCTA-GGAGCTTTACCTGACTTCCTTAGC  1097
      |||||||| || ||||| ||||||| ||||||||| ||||||| ||||||
seq2  AGATTTGGGCTTATCAGAAAAGCTAGGGAGCTTTA-CTGACTT-CTTAGC  1092

seq1  AGCCTTAATAGGTATGGGCTACCTTATCTTGGCAGGTGTCATTCTGAAGA  1147
      |||  | |||||||| ||||| |||||| || ||||| || ||||| | |
seq2  AGC--TCATAGGTAT-GGCTA-CTTATC-TGCCAGGT-TC-TTCTGGAAA  1135

seq1  ACACAGTTCAAGTCTGTTTTTTCTATAACCACTCCTCCTTCACCGTCTCT  1197
         ||||   |||| ||||||   |||||||   |||  | || |   ||
seq2  GACCAGT--CAGTC-GTTTTT--CATAACCATCTCTCTGTTACGGGTCCT  1180

seq1  AT----CCCTCTTCATA-AAGAC  1215
      ||    | ||||||||| |||||
seq2  ATTATCCACTCTTCATATAAGAC  1203