BAC Information

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BAC

Clone NameB6Ng01-089G05
Chromosome13 (Build37)6 (Build37)
Map Location 92,804,891 - 92,806,020132,008,423 - 132,009,223
singlet/doubletsingletsinglet
Overlap geneRasgrf2
Upstream geneSsbp2, Acot12, Zcchc9, Ckmt2, Rasgrf2
Downstream geneMsh3, Dhfr, 6430502M16Rik, 4930405M20Rik, Zfyve16, LOC100039070, Spz1, Serinc5, Ppia-ps13_1124.1, Thbs4, EG624619
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089G05.bB6Ng01-089G05.g
ACCDH901980DH901981
length1,160841
definitionDH901980|Mus musculus domesticus DNA, BAC clone: B6Ng01-089G05, 5' end.DH901981|Mus musculus domesticus DNA, BAC clone: B6Ng01-089G05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(92,804,891 - 92,806,020)(132,008,423 - 132,009,223)
sequence
gaattcccctgaactgggggtgaattatttgtattccgatgggcgatctc
ttccagcgatggccgacattgcaccaatattataggagatccgtggatca
tttatctctttctttctcccatatttttattggattccggacacaaagga
attaaatcccttaatttccaagtctactaactcattctccaccatggtga
aacttgcttcttctcagaatcctgacggttcaaaactgcgcatttttctt
ttattattctcttatttaatagaagtaattttggaaaatgcaacacattt
aaaatttgtgttaaataaaatctttcaatttggcagctgtctcctgatga
actataaatatctactttattaatttactattagagcagctcctacaaca
aggctgaagattgggtattattaatacccttgtttatatgcgactgcata
ttattaaaagcggggcatcagcattactcttggaacacaatgtcccaaac
caggttcaaataaatgccaatatatttaacacaatgctaaggaaatagca
gttttgttttacttttttatttcatgaacattaaagatgttcaactcaac
tcaaagaatctcttcaaaattctgagcaacatatggttaaagttttgtta
gagctagcagggaataattatttatgatagaaataaaatttcttccccac
tatgaatgtgacacaatcatgagtttcaacatccgtggagttacccgata
gagaacaccactgtctcaatgcacattcgaggcattcttcccagggacca
aaaggacgctctgtaactggaaagaaatctcggaaattttcagatagcat
ggatccaacgaagggagagcgtaagagccatcaccagaaccctaggaggt
atcagctcggggacatcagaacagggtctctaccacacacctacaacggg
caccatgtaccagaagccttctgcccttacctctaatcttcttgatgcct
gatcttcgacctctgaaggacgtagtgacggaggcatcgaatccttgggc
ttaataagaagtagcaatctctaacaaggacaaggacgatttaaagattt
ggtgaacggtggcatagcgtcagctacaaaactctgcccactgaagacat
ctcggaaacc
gaattccccatagcctatgagggcagtgtgtgtgtgtgtgtgttgtttgt
ctctcttactaagtattccatcttggtgtcctaatcacccgcagaaatga
acagaaagtcaaccaaagggtatgattattggcaaaaatatacttgtttg
cataggagaaaatccttccaggaccacaaataacaaggagagagtcacaa
tcctaacgaactagaatttcaattctaatatctgaaatttcactatattg
cacacattgttgcacaaatatcatgccctgtgatttagaactgaattctt
tctttttcattttttattagaacttttcttcatttacatttcaaatgcta
tcctgaaaatcccctatactctccccactgccctacttctctacccaaac
actcccaatttttgatcctgctgttcccctctactggggcatataaattt
tgctatgtcaaaaggcttttcttctgaatgatggccaactaggccatctg
agaacctatgcagtcccaggcaaatacaaaagtggatgctcacagtcacc
tattggatggaacacagggcaccaatggaggagctagagaaagtacaaag
gagctgaagggggtctgcaacccaatatgtggaataacaatatgaactaa
ccagtaacctcagagaccatgtctctagaactgaattcttgacagcctca
gccctactgcatcctgctaggtagagtcccaaagaatagtcagggatgca
tgtcatgctgctgtcactagtgtgttcatcagtagggaagtgaaatattc
actttgtctatctcctgtaaagactgtggacttccttcctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_92804891_92806020
seq2: B6Ng01-089G05.b_88_1203

seq1  GATCTCTTCAAGCTAAAAGGCC-ACATTTCACCAAGATTAGAGGAGATCC  49
      ||||||||| |||   | |||| ||||| |||||| |||| |||||||||
seq2  GATCTCTTCCAGC--GATGGCCGACATTGCACCAATATTATAGGAGATCC  48

seq1  GTGGTTCATTTGTAAACTTTCTTTCTCCCATATATTTATTTGATTCGGGA  99
      |||| |||||| |   ||||||||||||||||| |||||| ||||| |||
seq2  GTGGATCATTTAT-CTCTTTCTTTCTCCCATATTTTTATTGGATTCCGGA  97

seq1  CACAAAAAAATTAATAACGTTAATTTTGAAATCTACTAACAAATTCAAAA  149
      ||||||  ||||||   | |||||||  || |||||||||  ||||   |
seq2  CACAAAGGAATTAAATCCCTTAATTTCCAAGTCTACTAACTCATTCTCCA  147

seq1  ATAGGTTTAAAGTTGCTTCTTCAGAGAATCATAAAGGTTCAAAACTGTGC  199
        | | | ||| ||||||||||  |||||| | | |||||||||||| ||
seq2  CCATGGTGAAACTTGCTTCTTCTCAGAATCCTGACGGTTCAAAACTGCGC  197

seq1  ATTTTTCTTTTATTATTCTCTTATTTAATAGAAGTAATTTTGGAAAATGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTTTTATTATTCTCTTATTTAATAGAAGTAATTTTGGAAAATGC  247

seq1  AACACAATTAAAATTTGTGTTAAATAAAATCTTTCAATTTGGCAGCTGTC  299
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATTTAAAATTTGTGTTAAATAAAATCTTTCAATTTGGCAGCTGTC  297

seq1  TCCTGATGAACTATAAATAGCTACTTTATTAATTTACTAATAGAGCAGCT  349
      ||||||||||||||||||| ||||||||||||||||||| ||||||||||
seq2  TCCTGATGAACTATAAATATCTACTTTATTAATTTACTATTAGAGCAGCT  347

seq1  CCTACAACAAGGCTGAAGATTGGGTATTATTAATACCCTTGTTTATATGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAACAAGGCTGAAGATTGGGTATTATTAATACCCTTGTTTATATGC  397

seq1  GACTGCATATTATTAAAAGCAAAGCAGCAGCATTAGTCTTGGAACACAAT  449
      ||||||||||||||||||||   ||| |||||||| ||||||||||||||
seq2  GACTGCATATTATTAAAAGCGGGGCATCAGCATTACTCTTGGAACACAAT  447

seq1  GTCAGAAACCAGGTTCAAATAAATGCCAATATATTTAACACAATGCTAAG  499
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAAACCAGGTTCAAATAAATGCCAATATATTTAACACAATGCTAAG  497

seq1  GAAATAGCAGTTTTGTTTTACTTTTTTATTTCATGAACATTAAAAATGTT  549
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAAATAGCAGTTTTGTTTTACTTTTTTATTTCATGAACATTAAAGATGTT  547

seq1  CAACTCAACTCAAAGAATCTCTTCCAAATTCTGAGCAACATATGGTTAAA  599
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CAACTCAACTCAAAGAATCTCTTCAAAATTCTGAGCAACATATGGTTAAA  597

seq1  GTTTTGTTATAGCTAGCAGGGAATAATTATTTATGATAGAAATAAAATTT  649
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTAGAGCTAGCAGGGAATAATTATTTATGATAGAAATAAAATTT  647

seq1  CTTCCCAACTATGAATGTGACAAAATCAGGAGTTTCAACAGTAGTGGAGT  699
      |||||| ||||||||||||||| ||||| |||||||||||   |||||||
seq2  CTTCCCCACTATGAATGTGACACAATCATGAGTTTCAACATCCGTGGAGT  697

seq1  TACCCAATAGAGAACACCACTGTCTCAATGCACATTCGTGGCATTCTTCC  749
      ||||| |||||||||||||||||||||||||||||||| |||||||||||
seq2  TACCCGATAGAGAACACCACTGTCTCAATGCACATTCGAGGCATTCTTCC  747

seq1  CAGGGTCCAAAAGGGACGCTCTAGAACTGGAAAGAAATCTCAGAAAATTT  799
      ||||| |||||| |||||||||  ||||||||||||||||| | ||||||
seq2  CAGGGACCAAAA-GGACGCTCTGTAACTGGAAAGAAATCTC-GGAAATTT  795

seq1  CCAGACCAGCATGGATCCCAACGAAGGGACAGTGTAAGAGCCATTACCAG  849
       ||||  ||||||||| |||||||||||| || ||||||||||| |||||
seq2  TCAGA-TAGCATGGAT-CCAACGAAGGGAGAGCGTAAGAGCCATCACCAG  843

seq1  AAACACCAAGGCAGTTTCCAGCTCGGGGACACAAGAACAAAGTCACTACC  899
      ||   || ||| || |  |||||||||||||  ||||||  ||| |||||
seq2  AA--CCCTAGG-AGGTATCAGCTCGGGGACATCAGAACAGGGTCTCTACC  890

seq1  ACACAGCAGACAAGTGGTCACCATGTTCCCAGAAGCCTCCTGTCTCTTAC  949
      ||||| |  ||||  || ||||||| | |||||||||| ||| | |||||
seq2  ACACA-CCTACAA-CGGGCACCATG-TACCAGAAGCCTTCTG-CCCTTAC  936

seq1  CTTCTTAATCTTCTTGATGTCTGGATCCTCCTCCTCTTGATGGACGTGGT  999
      ||   |||||||||||||| || |||| ||  |||| ||| |||||| ||
seq2  CT--CTAATCTTCTTGATGCCT-GATCTTCGACCTC-TGAAGGACGTAGT  982

seq1  -ACGGACGCATCCGTTCCTTGGTCTTATTAAG-AGCAACAATCTGTAACA  1047
       ||||| |||||   ||||||| |||| |||| || | |||||| |||||
seq2  GACGGAGGCATCGAATCCTTGGGCTTAATAAGAAGTAGCAATCTCTAACA  1032

seq1  AGGAC-AGGTCCAATTCAGGATTTGGTGAACGGTGGCATAGTGTCAAGCT  1096
      ||||| ||| | | || | |||||||||||||||||||||| ||| ||||
seq2  AGGACAAGGACGATTTAAAGATTTGGTGAACGGTGGCATAGCGTC-AGCT  1081

seq1  ACAGAAGTTCTGCCCTC-GAAGACATC-CGGAAACC  1130
      ||| ||  ||||||| | ||||||||| ||||||||
seq2  ACA-AAACTCTGCCCACTGAAGACATCTCGGAAACC  1116

seq1: chr6_132008423_132009223
seq2: B6Ng01-089G05.g_113_911 (reverse)

seq1  GAGGAAGGAAGGCCACAGTCTTTATAAGGAAGATAGAACAAAGTG-ATAT  49
      ||||||||||| |||||||||||| |  | |||||| |||||||| ||||
seq2  GAGGAAGGAAGTCCACAGTCTTTACA--GGAGATAG-ACAAAGTGAATAT  47

seq1  TTCACTTCCTTACTGTTGAACACACTAGTGACAGCAGCATGACATGCATC  99
      ||||||||| ||||| ||||||||||||||||||||||||||||||||||
seq2  TTCACTTCCCTACTGATGAACACACTAGTGACAGCAGCATGACATGCATC  97

seq1  CCTGACTCTTCTTTGGGACTCTAACCTAGCAGGATGCAGTAGGGCTGAGG  149
      ||||||| |||||||||||||| |||||||||||||||||||||||||||
seq2  CCTGACTATTCTTTGGGACTCT-ACCTAGCAGGATGCAGTAGGGCTGAGG  146

seq1  CTGTCAAGAATTCAGTTCTAGAGACATGGTCTCTGAGGTTACTGGTTAGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAAGAATTCAGTTCTAGAGACATGGTCTCTGAGGTTACTGGTTAGT  196

seq1  TCATATTGTTGTTCCACCTATTGGGTTGCAGA-CCCCTTCAGCTCCTTTG  248
      |||||||||| |||||| |||||||||||||| |||||||||||||||||
seq2  TCATATTGTTATTCCACATATTGGGTTGCAGACCCCCTTCAGCTCCTTTG  246

seq1  TACTTTCTCTAGCTCCTCCATTGGTGCCCTGTGTTCCATCCAATAGGTGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCTCTAGCTCCTCCATTGGTGCCCTGTGTTCCATCCAATAGGTGA  296

seq1  CTGTGAGCATCCACTTTTGTATTTGCCTGGGACTGCATAGGTTCTCAGAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGCATCCACTTTTGTATTTGCCTGGGACTGCATAGGTTCTCAGAT  346

seq1  GGCCTAGTTGGCCATCATTCAGAAGAAAAGCCTTTTGACATTGCAAAATT  398
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGCCTAGTTGGCCATCATTCAGAAGAAAAGCCTTTTGACATAGCAAAATT  396

seq1  TATATGCCCCAGTAGAGGGGAACAGCAGGATCAAAAATTGGGAGTGTTTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCCCCAGTAGAGGGGAACAGCAGGATCAAAAATTGGGAGTGTTTG  446

seq1  GGTAGAGAAGTAGGGCAGTGGGGAGAGTATAGGGGATTTTCAGGATAGCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGAAGTAGGGCAGTGGGGAGAGTATAGGGGATTTTCAGGATAGCA  496

seq1  TTTGAAATGTAAATGAAGAAAAGTTCTAATAAAAAATGAAAAAGAAAGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAATGTAAATGAAGAAAAGTTCTAATAAAAAATGAAAAAGAAAGAA  546

seq1  TTCAGTTCTAAATCACAGGGCATGATATTTGTGCAACAATGTGTGCAATA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTCTAAATCACAGGGCATGATATTTGTGCAACAATGTGTGCAATA  596

seq1  TAGTGAAATTTCAGATATTAGAATTGAAATTCTAGTTCGTTATGATTGTG  648
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAGTGAAATTTCAGATATTAGAATTGAAATTCTAGTTCGTTAGGATTGTG  646

seq1  ACTCTCTCCTTGTTATTTGTGGTCCTGGAAGGATTTTCTCCTATGCAAAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTCCTTGTTATTTGTGGTCCTGGAAGGATTTTCTCCTATGCAAAC  696

seq1  AAGTATATTTTTGCCAATAATCATACCCTTTGGTTGACTTTCTGTTCATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATATTTTTGCCAATAATCATACCCTTTGGTTGACTTTCTGTTCATT  746

seq1  TCTGCGGGTGATTAGGACACCAAGATGGAATACATAGTAAGTGAGACAAA  798
      ||||||||||||||||||||||||||||||||| ||||||| ||||||||
seq2  TCTGCGGGTGATTAGGACACCAAGATGGAATACTTAGTAAGAGAGACAAA  796

seq1  CAA  801
      |||
seq2  CAA  799