BAC Information

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BAC

Clone NameB6Ng01-090L03
Chromosome6 (Build37)
Map Location 47,796,868 - 47,927,076
singlet/doubletdoublet
Overlap geneZfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601
Upstream geneCntnap2, LOC622745, LOC100041064, LOC100041078, A930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786
Downstream geneZfp777, Zfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090L03.bB6Ng01-090L03.g
ACCDH902927DH902928
length1,142648
definitionDH902927|Mus musculus domesticus DNA, BAC clone: B6Ng01-090L03, 5' end.DH902928|Mus musculus domesticus DNA, BAC clone: B6Ng01-090L03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,796,868 - 47,798,007)(47,926,429 - 47,927,076)
sequence
gaattcttgctgttcaagtagaaaatcccccaaagaggctgggcttggtg
gcacaggcctagaatctaacactggggaggtggcgacaggaacatcgtct
taagcccatccttggctacaaagcaagttctagattagactgggctgcaa
atattccatctgtaaaaaacaatccaaacagtccttcaaagaccgtgaga
ataatgagtttgttctctaatgtctaaaagtgtcagctaaattataggct
aactgcttgggagaaaaacgctacaaaacagtattggagtgttgctcagc
ggtacagcatttgtgtggcacatctaaagccctagggttaacaccaggta
ttacaagaaacaaaagttagcagtgtcagacaaaatatcctttaagtcag
ccagtaaaccatataaaattggacaagaattccattgactcatgaacttt
aaaaaaaaattcaaactagatacaaaaaaatggaggtagcaagatctcaa
catgaactggagagagaagaataagatccagcatgagctggagagccaga
taatgaaggtctcaagtcagctaacgagtactaccaagccctctcagtgc
aaaggaagctgagggcttctgtgcacctgagttcaggagtctgagagcag
ccttagcagtatagtaaagcctgcattcctgaaagtaaaaacagatcatg
aattagtatgtaagtaagtgaagttcatcagaaatttgtggcacttaatt
ttacaaatgagaacaaattttgaggggctggagagatgattcagcgttaa
aaggctaggcatgcaactaaagatgttaagagtttgggttcctatcactc
atgactttctctccaccctaccccccaaagaaagaaaaactagaatttga
gaacagattagtctattttagagaaaatgaaaatgaagcatgatgtatgg
gagcatcctgagaaagatcaatgtgaagaaaaattgctgattttacagga
tgggctaagaagtatgcagagaggaacttcagagtggttattaaacttca
tacaagtggcatcattgaaatacgaaaatggataatgcatggaaatggga
gaaaaaaaaaaagaaaatctccgatcaaacagcaaatgggtg
gaattcactgatcatctagtgaaaacccacaccagtctctgttcagagga
cccaggctccagctgtggctaccacataagggtttttctttttctttttt
ttttttttttttttttggtttttcgagacagggtttctctgtataggcct
ggctgtcctggaactcactttgtagaccaggctggcctcgaactcagaaa
tctgcctgcttctgcctcccgagtgctgggattaaaggcatgtgccacca
ctcccagccacataaaggtttttatacaagaaaaaaaataaatgaattaa
gtccgctaaaaacaaaacaaaccaaacaaacaaaaaacctaaacactgag
tgtttgctgggtaaataaaaaatgactgccaatgactgtggcaataggct
ttgggtgcctccatgaaacagaacaatagattatttagtctggtgtcagg
aatcctgtggatgtttgagctaacagccaaggggggaatgcctgatgtga
ggcaaaagcaaaagtagtcgtgagttagatgctgtggagaacacagaaga
gggaatgctctttagcggtgagcatggctggagaccaggctattctcttc
gttctttggaaagattacctaatagataggaaggtgggggggtggatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_47796868_47798007
seq2: B6Ng01-090L03.b_37_1178

seq1  GAATTC-TGCTGTTCAAGTAGAAAATCCCCCAAAGAGGCTGGGCTTGGTG  49
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCTGTTCAAGTAGAAAATCCCCCAAAGAGGCTGGGCTTGGTG  50

seq1  GCACAGGCCTAGAATCTAACACTGGGGAGGTGGCGACAGGAACATCGTCT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGCCTAGAATCTAACACTGGGGAGGTGGCGACAGGAACATCGTCT  100

seq1  TAAGCCCATCCTTGGCTACAAAGCAAGTTCTAGATTAGACTGGGCTGCAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCCATCCTTGGCTACAAAGCAAGTTCTAGATTAGACTGGGCTGCAA  150

seq1  ATATTCCATCTGTAAAAAACAATCCAAACAGTCCTTCAAAGACCGTGAGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCATCTGTAAAAAACAATCCAAACAGTCCTTCAAAGACCGTGAGA  200

seq1  ATAATGAGTTTGTTCTCTAATGTCTAAAAGTGTCAGCTAAATTATAGGCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGAGTTTGTTCTCTAATGTCTAAAAGTGTCAGCTAAATTATAGGCT  250

seq1  AACTGCTTGGGAGAAAAACGCTACAAAACAGTATTGGAGTGTTGCTCAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTTGGGAGAAAAACGCTACAAAACAGTATTGGAGTGTTGCTCAGC  300

seq1  GGTACAGCATTTGTGTGGCACATCTAAAGCCCTAGGGTTAACACCAGGTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAGCATTTGTGTGGCACATCTAAAGCCCTAGGGTTAACACCAGGTA  350

seq1  TTACAAGAAACAAAAGTTAGCAGTGTCAGACAAAATATCCTTTAAGTCAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGAAACAAAAGTTAGCAGTGTCAGACAAAATATCCTTTAAGTCAG  400

seq1  CCAGTAAACCATATAAAATTGGACAAGAATTCCATTGACTCATGAACTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAAACCATATAAAATTGGACAAGAATTCCATTGACTCATGAACTTT  450

seq1  AAAAAAAAATTCAAACTAGATACAAAAAAATGGAGGTAGCAAGATCTCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAATTCAAACTAGATACAAAAAAATGGAGGTAGCAAGATCTCAA  500

seq1  CATGAACTGGAGAGAGAAGAATAAGATCCAGCATGAGCTGGAGAGCCAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACTGGAGAGAGAAGAATAAGATCCAGCATGAGCTGGAGAGCCAGA  550

seq1  TAATGAAGGTCTCAAGTCAGCTAACGAGTACTACCAAGCCCTCTCAGTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAGGTCTCAAGTCAGCTAACGAGTACTACCAAGCCCTCTCAGTGC  600

seq1  AAAGGAAGCTGAGGGCTTCTGTGCACCTGAGTTCAGGAGTCTGAGAGCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGCTGAGGGCTTCTGTGCACCTGAGTTCAGGAGTCTGAGAGCAG  650

seq1  CCTTAGCAGTATAGTAAAGCCTGCATTCCTGAAAGTAAAAACAGATCATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGCAGTATAGTAAAGCCTGCATTCCTGAAAGTAAAAACAGATCATG  700

seq1  AATTAGTATGTAAAGTAAGTGAAGTTCATCAGAAA-TTGTGGCACTTAAT  748
      ||||||||||| ||||||||||||||||||||||| ||||||||||||||
seq2  AATTAGTATGT-AAGTAAGTGAAGTTCATCAGAAATTTGTGGCACTTAAT  749

seq1  TTTACAAATGAGAACAAA-TTTGA-GGGCTGGAGAGATGATTCAGGCGTT  796
      |||||||||||||||||| ||||| ||||||||||||||||||| |||||
seq2  TTTACAAATGAGAACAAATTTTGAGGGGCTGGAGAGATGATTCA-GCGTT  798

seq1  -AAAGGCTAGGCATGCAACTAAAGATGTTAAGAGTTT-GGTTCCTATCAC  844
       |||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAAAGGCTAGGCATGCAACTAAAGATGTTAAGAGTTTGGGTTCCTATCAC  848

seq1  TCATGACTTTCTCTCCACCCTACCCCCCAAAAGAAAGAAAAACTAGAATT  894
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCATGACTTTCTCTCCACCCTACCCCCC-AAAGAAAGAAAAACTAGAATT  897

seq1  TGAGAACAGATTAGTCTA-TTTAGAGAAAATGAAAATGGAGCATGATGTA  943
      |||||||||||||||||| ||||||||||||||||||| |||||||||||
seq2  TGAGAACAGATTAGTCTATTTTAGAGAAAATGAAAATGAAGCATGATGTA  947

seq1  TGGAAGCAATCTGAGAAAGATCAATGTGAAGAAAAATTGTTGATTTTACA  993
      ||| ||||  ||||||||||||||||||||||||||||| ||||||||||
seq2  TGGGAGCATCCTGAGAAAGATCAATGTGAAGAAAAATTGCTGATTTTACA  997

seq1  -GATGGCATAAGAGTTAGCCAGAGAGGAACTTCAGAGTGTTAGTTAAACA  1042
       |||||  |||||  ||  |||||||||||||||||||| |  |||||| 
seq2  GGATGGGCTAAGAAGTATGCAGAGAGGAACTTCAGAGTGGTTATTAAACT  1047

seq1  TCA-ACAAGTTGCAAACATTGAAATACAGAAAATGGAAAATGCATTGAAA  1091
      ||| |||||| || | ||||||||||| ||||||||| |||||| || ||
seq2  TCATACAAGTGGC-ATCATTGAAATAC-GAAAATGGATAATGCA-TGGAA  1094

seq1  ATGGAAGAAAAAAAAAAAGAAAAT-TCCGATCCAAAACAGCAAATAGGTG  1140
      |||| ||||||||||||||||||| |||||||  ||||||||||| ||||
seq2  ATGGGAGAAAAAAAAAAAGAAAATCTCCGATC--AAACAGCAAATGGGTG  1142

seq1: chr6_47926429_47927076
seq2: B6Ng01-090L03.g_70_717 (reverse)

seq1  AATCCACCCCCCCACCTTCCTATCTATTAGGTAATCTTTCCAAAGAACGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCACCCCCCCACCTTCCTATCTATTAGGTAATCTTTCCAAAGAACGA  50

seq1  AGAGAATAGCCTGGTCTCCAGCCATGCTCACCGCTAAAGAGCATTCCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATAGCCTGGTCTCCAGCCATGCTCACCGCTAAAGAGCATTCCCTC  100

seq1  TTCTGTGTTCTCCACAGCATCTAACTCACGACTACTTTTGCTTTTGCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGTTCTCCACAGCATCTAACTCACGACTACTTTTGCTTTTGCCTC  150

seq1  ACATCAGGCATTCCCCCCTTGGCTGTTAGCTCAAACATCCACAGGATTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGGCATTCCCCCCTTGGCTGTTAGCTCAAACATCCACAGGATTCC  200

seq1  TGACACCAGACTAAATAATCTATTGTTCTGTTTCATGGAGGCACCCAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACCAGACTAAATAATCTATTGTTCTGTTTCATGGAGGCACCCAAAG  250

seq1  CCTATTGCCACAGTCATTGGCAGTCATTTTTTATTTACCCAGCAAACACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTGCCACAGTCATTGGCAGTCATTTTTTATTTACCCAGCAAACACT  300

seq1  CAGTGTTTAGGTTTTTTGTTTGTTTGGTTTGTTTTGTTTTTAGCGGACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTTAGGTTTTTTGTTTGTTTGGTTTGTTTTGTTTTTAGCGGACTT  350

seq1  AATTCATTTATTTTTTTTCTTGTATAAAAACCTTTATGTGGCTGGGAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATTTATTTTTTTTCTTGTATAAAAACCTTTATGTGGCTGGGAGTG  400

seq1  GTGGCACATGCCTTTAATCCCAGCACTCGGGAGGCAGAAGCAGGCAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCACATGCCTTTAATCCCAGCACTCGGGAGGCAGAAGCAGGCAGATT  450

seq1  TCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAG  500

seq1  GCCTATACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAA  550

seq1  AAAAGAAAAAGAAAAACCCTTATGTGGTAGCCACAGCTGGAGCCTGGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAAGAAAAACCCTTATGTGGTAGCCACAGCTGGAGCCTGGGTC  600

seq1  CTCTGAACAGAGACTGGTGTGGGTTTTCACTAGATGATCAGTGAATTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAACAGAGACTGGTGTGGGTTTTCACTAGATGATCAGTGAATTC  648