BAC Information

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BAC

Clone NameB6Ng01-090L19
Chromosome6 (Build37)
Map Location 88,139,139 - 88,301,705
singlet/doubletdoublet
Overlap geneGata2, Dnajb8, Eefsec
Upstream geneAntxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1
Downstream geneRuvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175, 4933427D06Rik, Gm1965, LOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839, 4930512J16Rik, Plxna1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090L19.bB6Ng01-090L19.g
ACCDH902959DH902960
length1,0791,073
definitionDH902959|Mus musculus domesticus DNA, BAC clone: B6Ng01-090L19, 5' end.DH902960|Mus musculus domesticus DNA, BAC clone: B6Ng01-090L19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,139,139 - 88,140,233)(88,300,622 - 88,301,705)
sequence
gaattcactagaaacgataaaattgaccatcagacagaggaggggagtag
aggaggggagaagagaataactaccgtctaatggatgctatttggccata
ggcagacttcttcgggtggagggaccagcagacaggaggggagggggttc
ttgtccagagactccaaagaaccgcaaggcctcagggccgctgtccctgg
aggaaggaggacggaaacctggcctgggcgtcagcaaggcccctaccatg
gttgcaaaggagattggcttttcttcagtcataggaatgggtttttgttg
ccaacacgcggtggcctttggcagtcagcccctgtcgaatttcctgccgg
tccatccttccagcaaatggttgtggggcacctactgtgtgctagccttt
cccttggagtcgcccaagcaaccacacaaagccaacgcgtcggagggcac
ctgctgcctctcgcgcagcgggcctgggaacgcgaagccgccaggtggcg
ctctgaacccgcgcaccggcccagccagccgcgggggtcgcccgctccgg
ctgcaggggaggagcggtcggaggcggggctcacgccgcaggttgtgtga
ctttgggtttgacctgcctggagatgagctaatcccgctgtataatagac
tccggggagataggaaaatggccgcgcgctatctgcgtcgccatggggac
catcgcccgcgggcggggcgcgggcctggaaaaatacagcctttgtggcg
gcgcgtgtcactcacggccgggacctcgggcggcgggctgggctgtgttg
ccccagctgcaaggcctgggccgaggggcccagagccagcaccaggaccc
ctgggctgtctcaaattcacagtcacttgcccggtgtcgctctccagcac
tccccgaccgagcgtacagcatctcatcttcacagcaatgtccaaccaga
gtctgcacaacacagctcaatcaggcctgaaaaaaaaaaaaaaaccggtc
cttacttccggcatctctctgacacctagtcgtctggttccaatgttcca
cagacccgtgcgtgtttcaaaggctgagt
gaattcagagatctgcccacctctgcctcccaagcactgacattaaaggc
ttgtgacatcaagcccgactccatccccgtttcttagcttagccttgatg
tactctgctaactgtccctgaggttcttggcactctcaagactctgaaag
tcttttttcctttagagagctactcccctgtcctgggcctgtgagtgtta
agcctggtactcaccatgttatggcagcatttgtctctgagcttttgtgt
gtataatgctgacctcctagttgtccatctgtcctcaggactagacccag
ggtgggctctacaaaatatgttgttaataggagtaaaaaccttagagcaa
ataattgaattggctttttgtcagcatttggttggaattggacagtgagt
gtccttggaggttatgtgtagcttctcctggggctgtgtctcctttttga
ggcagtatcctgatgcttcatcagtaagccaaggtagagatgtgccctgg
atcaccatgtggtcttgtttgggaggagcaactgtcatcatgtgtgtagg
gctaaacagctgccttcctcgggccctagtctaggaagcagctttctttc
tctgactttcatctagatgttatatcctggcttcattgctaactgctttc
tgctttggaagaggcatgctggaaggcaagcctccctatgaatttgatat
tttcacgagttggctttgtggagtctgttcttcagtctgcatgtgcctgg
gggtgccagatgcatgggcttggagatcattactggctctggtagaacag
caggcaaggaggggaggcagaggtagaaattggaacagtcgtgggagaac
tgtgtggctgccctttaagcagatcagcctttgcatagtgatcacacagc
tctggctatgctcaggcttatcagactcactggaggcactgccatcactt
catctagtattttaaaagatttatttattattgtaagtacactgatctgt
catctgtcttcatactacagaagaggcataaatctcattatggatggtgt
gagccccatgtggttgccgggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_88139139_88140233
seq2: B6Ng01-090L19.b_47_1125

seq1  GAATTCACTAGAAACGATAAAATTGACCATCAGACAGAGGAGGGGAGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGAAACGATAAAATTGACCATCAGACAGAGGAGGGGAGTAG  50

seq1  AGGAGGGGAGAAGAGAATAACTACCGTCTAATGGATGCTATTTGGCCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGGAGAAGAGAATAACTACCGTCTAATGGATGCTATTTGGCCATA  100

seq1  GGCAGACTTCTTCGGGTGGAGGGACCAGCAGACAGGAGGGGAGGGGGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGACTTCTTCGGGTGGAGGGACCAGCAGACAGGAGGGGAGGGGGTTC  150

seq1  TTGTCCAGAGACTCCAAAGAACCGCAAGGCCTCAGGGCCGCTGTCCCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCAGAGACTCCAAAGAACCGCAAGGCCTCAGGGCCGCTGTCCCTGG  200

seq1  AGGAAGGAGGACGGAAACCTGGCCTGGGCGTCAGCAAGGCCCCTACCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAGGACGGAAACCTGGCCTGGGCGTCAGCAAGGCCCCTACCATG  250

seq1  GTTGCAAAGGAGATTGGCTTTTCTTCAGTCATAGGAATGGGTTTTTGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAAAGGAGATTGGCTTTTCTTCAGTCATAGGAATGGGTTTTTGTTG  300

seq1  CCAACACGCGGTGGCCTTTGGCAGTCAGCCCCTGTCGAATTTCCTGCCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACGCGGTGGCCTTTGGCAGTCAGCCCCTGTCGAATTTCCTGCCGG  350

seq1  TCCATCCTTCCAGCAAATGGTTGTGGGGCACCTACTGTGTGCTAGCCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCTTCCAGCAAATGGTTGTGGGGCACCTACTGTGTGCTAGCCTTT  400

seq1  CCCTTGGAGTCGCCCAAGCAACCACACAAAGCCAACGCGTCGGAGGGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGAGTCGCCCAAGCAACCACACAAAGCCAACGCGTCGGAGGGCAC  450

seq1  CTGCTGCCTCTCGCGCAGCGGGCCTGGGAACGCGAAGCCGCCAGGTGGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCCTCTCGCGCAGCGGGCCTGGGAACGCGAAGCCGCCAGGTGGCG  500

seq1  CTCTGAACCCGCGCACCGGCCCAGCCAGCCGCGGGGGTCGCCCGCTCCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAACCCGCGCACCGGCCCAGCCAGCCGCGGGGGTCGCCCGCTCCGG  550

seq1  CTGCAGGGGAGGAGCGGTCGGAGGCGGGGCTCACGCCGCAGGTTGTGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGGGAGGAGCGGTCGGAGGCGGGGCTCACGCCGCAGGTTGTGTGA  600

seq1  CTTTGGGTTTGACCTGCCTGGAGATGAGCTAATCCCGCTGTATAATAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGTTTGACCTGCCTGGAGATGAGCTAATCCCGCTGTATAATAGAC  650

seq1  TCCGGGGAGATAGGAAAATGGCCGCGCGCTATCTGCGTCGCCATGGGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGGGAGATAGGAAAATGGCCGCGCGCTATCTGCGTCGCCATGGGGAC  700

seq1  CATCGCCCGCGGGCGGGGCGCGGGCCTGGAAAAATACAGCCTTTGTGGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGCCCGCGGGCGGGGCGCGGGCCTGGAAAAATACAGCCTTTGTGGCG  750

seq1  GCGCGTGTCACTCACGGCCGGGACCTCGGGCGGCGGGCTGGGCTGTGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGTGTCACTCACGGCCGGGACCTCGGGCGGCGGGCTGGGCTGTGTTG  800

seq1  CCCCAGCTGCAAGGCCTTGGCCGAGGGGCCCCAGAGCCAGCACCAGGACC  850
      ||||||||||||||||| |||||||||| |||||||||||||||||||||
seq2  CCCCAGCTGCAAGGCCTGGGCCGAGGGG-CCCAGAGCCAGCACCAGGACC  849

seq1  CCTGGGCTGTCTCAAACTCCACAGTCACTTGCCCGGTGTCGCTCTCCAGC  900
      |||||||||||||||| | |||||||||||||||||||||||||||||||
seq2  CCTGGGCTGTCTCAAA-TTCACAGTCACTTGCCCGGTGTCGCTCTCCAGC  898

seq1  ACTCCCCGACCGAGCGTACAGCCATCTCATCCTCACAGCCAATGTCCAAC  950
      ||||||||||||||||||||| ||||||||| |||||| |||||||||| 
seq2  ACTCCCCGACCGAGCGTACAG-CATCTCATCTTCACAG-CAATGTCCAA-  945

seq1  CCAGAGTCTGCACAACACAGGCTCAATCAAGGCCCGAAAAAAAAAAAAAA  1000
      ||||||||||||||||||| |||||||| ||||| |   |||||||||||
seq2  CCAGAGTCTGCACAACACA-GCTCAATC-AGGCCTG---AAAAAAAAAAA  990

seq1  AAAACCGGTCCTTACCTTCGCGCATCTCTCTGCACACCTAGTCGTTCTGG  1050
      |||||||||||||| ||||  ||||||||||| ||||||||||| |||||
seq2  AAAACCGGTCCTTA-CTTCCGGCATCTCTCTG-ACACCTAGTCG-TCTGG  1037

seq1  GTCCACACTGTCCCACAGACCCGTGCGTGTTCCAAAGGCCTGAGT  1095
       ||  || ||| ||||||||||||||||||| |||||| ||||||
seq2  TTC--CAATGTTCCACAGACCCGTGCGTGTTTCAAAGG-CTGAGT  1079

seq1: chr6_88300622_88301705
seq2: B6Ng01-090L19.g_72_1144 (reverse)

seq1  ATCCCGGCAACCACATGGTGGCTCACAACCATCCATAATGAGATCTAATG  50
      |||||||||||||||||| ||||||| ||||||||||||||||| | |||
seq2  ATCCCGGCAACCACATGG-GGCTCAC-ACCATCCATAATGAGAT-TTATG  47

seq1  CCCTCTTCTGGTATGTATGAAGACAGATGACAGATACAGTGTACTTACAT  100
       |||||||| ||| ||||||||||||||||||||| ||||||||||||| 
seq2  -CCTCTTCT-GTA-GTATGAAGACAGATGACAGAT-CAGTGTACTTACA-  92

seq1  ATAATAAATAAATCTTTTTAAAAAATACTAGATGGAGTGATGGCAGTGGC  150
      ||||||||||||||||||   ||||||||||||| ||||||||||||| |
seq2  ATAATAAATAAATCTTTT---AAAATACTAGATGAAGTGATGGCAGTGCC  139

seq1  CTCAGTGAGTCTGATAAGCCTGAGCATAGCCAGGGCTGTGTGATCACTAT  200
        ||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCCAGTGAGTCTGATAAGCCTGAGCATAGCCAGAGCTGTGTGATCACTAT  189

seq1  GCAAAGGCTGATCTGCTTAAAGGGCAGCCACACAGTTCTCCCACGACTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGCTGATCTGCTTAAAGGGCAGCCACACAGTTCTCCCACGACTGT  239

seq1  TCCAATTTCTACCTCTGCCT-CCCTCCTGCCCTGCTGTTCTACCAGAGCC  299
      |||||||||||||||||||| |||||||  ||||||||||||||||||||
seq2  TCCAATTTCTACCTCTGCCTCCCCTCCTTGCCTGCTGTTCTACCAGAGCC  289

seq1  AGTAATGATCTCCAAGCCCATGCATCTGGCACCCCCAGGCACATGCAGAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGTAATGATCTCCAAGCCCATGCATCTGGCACCCCCAGGCACATGCAGA-  338

seq1  CTGAAGAACAGACTCCACAAAGCCAACTCGTGAAAATATCAAATTCATAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAACAGACTCCACAAAGCCAACTCGTGAAAATATCAAATTCATAG  388

seq1  GGAGGCTTGCCTTCCAGCATGCCTCTTCCAAAGCAGAAAGCAGTTAGCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTTGCCTTCCAGCATGCCTCTTCCAAAGCAGAAAGCAGTTAGCAA  438

seq1  TGAAGCCAGGATATAACATCTAGATGAAAGTCAGAGAAAGAAAGCTGCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCAGGATATAACATCTAGATGAAAGTCAGAGAAAGAAAGCTGCTT  488

seq1  CCTAGACTAGGGCCCGAGGAAGGCAGCTGTTTAGCCCTACACACATGATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGACTAGGGCCCGAGGAAGGCAGCTGTTTAGCCCTACACACATGATG  538

seq1  ACAGTTGCTCCTCCCAAACAAGACCACATGGTGATCCAGGGCACATCTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGCTCCTCCCAAACAAGACCACATGGTGATCCAGGGCACATCTCT  588

seq1  ACCTTGGCTTACTGATGAAGCATCAGGATACTGCCTCAAAAAGGAGACAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGCTTACTGATGAAGCATCAGGATACTGCCTCAAAAAGGAGACAC  638

seq1  AGCCCCAGGAGAAGCTACACATAACCTCCAAGGACACTCACTGTCCAATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCAGGAGAAGCTACACATAACCTCCAAGGACACTCACTGTCCAATT  688

seq1  CCAACCAAATGCTGACAAAAAGCCAATTCAATTATTTGCTCTAAGGTTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCAAATGCTGACAAAAAGCCAATTCAATTATTTGCTCTAAGGTTTT  738

seq1  TACTCCTATTAACAACATATTTTGTAGAGCCCACCCTGGGTCTAGTCCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCTATTAACAACATATTTTGTAGAGCCCACCCTGGGTCTAGTCCTG  788

seq1  AGGACAGATGGACAACTAGGAGGTCAGCATTATACACACAAAAGCTCAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGATGGACAACTAGGAGGTCAGCATTATACACACAAAAGCTCAGA  838

seq1  GACAAATGCTGCCATAACATGGTGAGTACCAGGCTTAACACTCACAGGCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATGCTGCCATAACATGGTGAGTACCAGGCTTAACACTCACAGGCC  888

seq1  CAGGACAGGGGAGTAGCTCTCTAAAGGAAAAAAGACTTTCAGAGTCTTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGGGGAGTAGCTCTCTAAAGGAAAAAAGACTTTCAGAGTCTTGA  938

seq1  GAGTGCCAAGAACCTCAGGGACAGTTAGCAGAGTACATCAAGGCTAAGCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCCAAGAACCTCAGGGACAGTTAGCAGAGTACATCAAGGCTAAGCT  988

seq1  AAGAAACGGGGATGGAGTCGGGCTTGATGTCACAAGCCTTTAATGTCAGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACGGGGATGGAGTCGGGCTTGATGTCACAAGCCTTTAATGTCAGT  1038

seq1  GCTTGGGAGGCAGAGGTGGGCAGATCTCTGAATTC  1084
      |||||||||||||||||||||||||||||||||||
seq2  GCTTGGGAGGCAGAGGTGGGCAGATCTCTGAATTC  1073