BAC Information

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BAC

Clone NameB6Ng01-090M19
Chromosome6 (Build37)
Map Location 101,657,223 - 101,658,323
singlet/doubletsinglet
Overlap genenone
Upstream geneBC049816, Ppp4r2, EG545870, LOC100043321, Pdzrn3
Downstream geneEG666084, Cntn3, EG666123
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090M19.bB6Ng01-090M19.g
ACCDH903005DH903006
length1,2121,085
definitionDH903005|Mus musculus domesticus DNA, BAC clone: B6Ng01-090M19, 5' end.DH903006|Mus musculus domesticus DNA, BAC clone: B6Ng01-090M19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggggagaacctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttatccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattctaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaataaactcaaacaag
tcaatggcctttctctatacaaaaaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatcttggcg
tgactctaactaaggaagtgaaagttctgtatgataaaaacttcaaatct
ctgaagaaagaaattaaggaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcagtgcaatccccatcaaaattccaactcaattcttc
aacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacc
taggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatca
ccatgccagacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagagacagacaagtagaccaatggaatagaattgaaga
cccagaaatgaacccacacacctatggtcacttgatcttcgacaagggag
ctaaaaccatccagtggaagaaagacagcattttcacaattggtgctggc
acaactggtgtatcgtgtagaagatgcgaattgatccatacttatctcct
gtactaagtcaaatctagtggatcaggactcaaataaaccagagacactg
aaacttatagaggagaaagtgggaaagcttgaagaatgggcacaggcaaa
tctgaacgaacagcatgcttgtgctgtagatcggaattgacaatggacct
atgaccaagttcgcaggccagaccgtctagtcaggactccctcacgaatt
ggggaagaggga
gaattcttagattcaaagtcagagacaaaacagtgaagagattctgtttt
gacagcctcctcacatccttatcagctcatggctacctaaagattgagtt
cagctttgagaaatctgacatctttctatgatatctgtatgatatgagat
tttattatatgtagtaatatggtcataagaacttcaaaggcaatatttta
tatctttctttgatggttcttgaaactctggtaattagggagatgataaa
aataaccttgtacacttactctccagggatgtaggcttgccccctcagca
aagaaaacaatgtaactgatgaaggaattacatcattagaggatttatga
agtgttagctcaagaagtctgcttcttgaacaccattttgctttagtaat
ttgttacttagttcgaaactaatgtcaatttaaaaaaagaatttgtgatt
gagtttaaatggcttggttttctttatgaagacagccctgttggcaagtt
agtctaaatttgctgagttaaaaaaataaatctgtggttgatatgaatcc
atattttcttcaaatgttttctgttttattgaaaggaatatggaaagtgc
caagttaatttggaagacttcactagctcaattggaaaaaaaaaacttag
ggagagagatacttcaatgaacaacttgaattatgcaatccaagagctag
ggttatatatgattcatactttcaaggataattcaacatagtggtaataa
aggaaaagggggaggggatggcctaccataggggatggcattgagaagcc
agatttttttcccctcaaagaaattcagatggtttctagatgggcactga
tgacttcagtgggacaagtaaacaaaaggattaggtaaggttacagtatt
ttgtttactcagttcattaattacaaactgaggaatgagatggagtgggt
ttatgagaaatgagattttgacctggaaattgaaagtactgcagaaagtg
gaggataactgatgaaaccagacacagatctgctatccaggcctttcgat
tctcttgtatgagagtgtgttttgcatactctcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_101657223_101658323
seq2: B6Ng01-090M19.g_69_1153

seq1  GAATTCTTAGATTCAAAGTCAGAGACAAAACAGTGAAGAGATTCTGTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGATTCAAAGTCAGAGACAAAACAGTGAAGAGATTCTGTTTT  50

seq1  GACAGCCTCCTCACATCCTTATCAGCTCATGGCTACCTAAAGATTGAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCTCCTCACATCCTTATCAGCTCATGGCTACCTAAAGATTGAGTT  100

seq1  CAGCTTTGAGAAATCTGACATCTTTCTATGATATCTGTATGATATGAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTGAGAAATCTGACATCTTTCTATGATATCTGTATGATATGAGAT  150

seq1  TTTATTATATGTAGTAATATGGTCATAAGAACTTCAAAGGCAATATTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATATGTAGTAATATGGTCATAAGAACTTCAAAGGCAATATTTTA  200

seq1  TATCTTTCTTTGATGGTTCTTGAAACTCTGGTAATTAGGGAGATGATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTCTTTGATGGTTCTTGAAACTCTGGTAATTAGGGAGATGATAAA  250

seq1  AATAACCTTGTACACTTACTCTCCAGGGATGTAGGCTTGCCCCCTCAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCTTGTACACTTACTCTCCAGGGATGTAGGCTTGCCCCCTCAGCA  300

seq1  AAGAAAACAATGTAACTGATGAAGGAATTACATCATTAGAGGATTTATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACAATGTAACTGATGAAGGAATTACATCATTAGAGGATTTATGA  350

seq1  AGTGTTAGCTCAAGAAGTCTGCTTCTTGAACACCATTTTGCTTTAGTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTAGCTCAAGAAGTCTGCTTCTTGAACACCATTTTGCTTTAGTAAT  400

seq1  TTGTTACTTAGTTCGAAACTAATGTCAATTTAAAAAAAGAATTTGTGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTACTTAGTTCGAAACTAATGTCAATTTAAAAAAAGAATTTGTGATT  450

seq1  GAGTTTAAATGGCTTGGTTTTCTTTATGAAGACAGCCCTGTTGGCAAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTAAATGGCTTGGTTTTCTTTATGAAGACAGCCCTGTTGGCAAGTT  500

seq1  AGTCTAAATTTGCTGAGTTAAAAAAATAAATCTGTGGTTGATATGAATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAAATTTGCTGAGTTAAAAAAATAAATCTGTGGTTGATATGAATCC  550

seq1  ATATTTTCTTCAAATGTTTTCTGTTTTATTGAAAGGAATATGGAAAGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCTTCAAATGTTTTCTGTTTTATTGAAAGGAATATGGAAAGTGC  600

seq1  CAAGTTAATTTGGAAGACTTCACTAGCTCAATTGGAAAAAAAAAACTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTAATTTGGAAGACTTCACTAGCTCAATTGGAAAAAAAAAACTTAG  650

seq1  GGAGAGAGATACTTCAATGAACAACTTGAATTATGCAATCCAAGAGCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAGATACTTCAATGAACAACTTGAATTATGCAATCCAAGAGCTAG  700

seq1  GGTTATATATGATTCATACTTTCAAGGATAATTCAACATAGTGGTAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATATATGATTCATACTTTCAAGGATAATTCAACATAGTGGTAATAA  750

seq1  AGGAAAAGGGGGAGGGGATGGCCTACCATAGGGGATGGCATTGAGAAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGGGGGAGGGGATGGCCTACCATAGGGGATGGCATTGAGAAGCC  800

seq1  AGATTTTTTTCCCCTCAAAGAAATTCAGATGGTTTCTAGATGGGCACTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTTTCCCCTCAAAGAAATTCAGATGGTTTCTAGATGGGCACTGA  850

seq1  TGACTTCAGTGGGACAAGTAAACAAAAGGATTAGGTAAGGTTACAGTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCAGTGGGACAAGTAAACAAAAGGATTAGGTAAGGTTACAGTATT  900

seq1  TTGTTTACTCAGTTCATTAATTACAAACTGAGGAATGAGATGGAGTGGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTACTCAGTTCATTAATTACAAACTGAGGAATGAGATGGAGTGGGT  950

seq1  TTATGAGAAAATGAGAATTTTGAACCTGGGAAATTGAAAGTTACTTGCAG  1000
      ||||||| ||||||| |||||| |||| |||||||||||| ||| |||||
seq2  TTATGAG-AAATGAG-ATTTTG-ACCT-GGAAATTGAAAG-TAC-TGCAG  994

seq1  AAAAGTGAGGGTTAAACTGGATGAAACCAGACACAGATTCTTGCTATCCC  1050
      |||   |||| |  |||| |||||||||||||||||||   |||||| ||
seq2  AAAGTGGAGGAT--AACT-GATGAAACCAGACACAGAT--CTGCTAT-CC  1038

seq1  AGGCCTTTCGATTTCCTCCTTGTAATGAGAGTGTGTTTTGCATACTCTCA  1100
      |||||||||||||  || ||||| ||||||||||||||||||||||||||
seq2  AGGCCTTTCGATT--CT-CTTGT-ATGAGAGTGTGTTTTGCATACTCTCA  1084

seq1  A  1101
      |
seq2  A  1085