BAC Information

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BAC

Clone NameB6Ng01-091P09
Chromosome6 (Build37)7 (Build37)
Map Location 36,907,611 - 36,908,84928,532,207 - 28,533,323
singlet/doubletsingletsinglet
Overlap geneDgki, EG665024
Upstream gene9330158H04Rik, Chrm2, EG620863, LOC100039370, Ptn, LOC100039514
Downstream geneCreb3l2, Akr1d1, LOC665046, Ybx1-ps2, LOC100039636, LOC665102, Trim24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091P09.bB6Ng01-091P09.g
ACCDH903852DH903853
length1,2181,105
definitionDH903852|Mus musculus domesticus DNA, BAC clone: B6Ng01-091P09, 5' end.DH903853|Mus musculus domesticus DNA, BAC clone: B6Ng01-091P09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(36,907,611 - 36,908,849)(28,532,207 - 28,533,323)
sequence
gaattctaacatgtctaagaattttgtaaagatatcaaagagcttcccca
tatccattacactgaacgagcttctcaccagtgtggactccctaagctct
gttccacgaacaatgtctgttcaatcttccacacactgaaagagtttcac
atcagtatgaattctcagatgtttattgagttgggatctacatctgaagg
ctgacccacacagctcacattcaaatggtttctctccagtgtggatgctc
tgatgctgaatgagatacgccagaacaacgaaggcctttccacactcctg
acacttaaatggtttctcatcagaatgaattttccgatggtggaacaggc
ttgagcggtgaataaaacctttcccacactcactgcattcatatgatttc
acaccagcatgaacagcgccatgttgaatgagattggattcacgcttgaa
ggacttcccacataccttgcattcaaagggtcttttacttgtatgaacaa
ttttatggctattaagttgactgggaagaaggaaagcctttccgcattct
ttacattcaaaaggtctctcaccactgtgagacttctgatgatgaatgag
aagtgtgttaagtctaaagaacttcccacattcttcacactggaagggtt
tcttgccagtgtgaatactctcatgttccgttagttttgacctttgacga
aagcatttgccacattccttgcactgatagggtttcccatcagtgtgaac
tgtgagatgcttattaagttggtacttatttgggaaggctgacccacaga
gcttacacttgaaaggattctcttcagtgtgagttttcagatgctcagaa
aggtatacctgaagccgaaaagccttcccacacacattgcattccaagta
tttctcttccatgtgagttttctgatgctcagaaaggtatagttgaagcc
ggaaagcactcccacatacattgcattcaaagggttctcgccgctatgaa
tgcgctggtgcttaacaaggtggtctggcagttctaaatttctgcacaat
cctcacatcaatggcttctcttcactatgactgctctggtgccgagtgga
gggggagccagaacaaatggagccttccacattcttaactgaaaggatct
ctcacggatggatttctggtatgggcgccaaactctgtgtcgtagctcca
ctcattacttcaatggtt
gaattcaaagttagattaaatgaatttatttgtactgctagcagaaggaa
gacagcctaagagccagagagtgtgtccagtggaagaggtggtaaggtgg
ggtcttactcatcaggaaggtgggcattataactcttcatcagtccacat
ctgggcagctgtttgacttccctcagttgttccttcttttctgctgtgga
ataaaacattcttacagacatcaacgagttctttttgtcttttggttttg
ttgtttcttcttccttccttccttccttccttcctttctttttttttttt
ttttatttttatttttgaagagataagcaggttttacagatgcacaggca
gtgttaacacctcacagcccattatcctattcttattcatttgcaggcta
ctaggatcaccttttgctgtatggtttgtatgctcttccagagcaaaagg
ttattagtcattaagggaatcctggttccatattaagtttccatagccat
cacagaagacctgtatacattattattcagttctgaccactcctattact
gggataaagcagttcattgctggacaggcaacaaaatcaatgccatcagg
ttaggaccagctgtcatgtccccacaggttcaaaaaaaacttcactgaag
ggtgtgacagttatatatttatgtggtatagatattttattctccatgat
ctggttcagaaaccttcactaacttgtatggatttcttgtagtatgcaaa
gaagcacttaagattattacagtttagttcattataatcccattaagcaa
acatgacttcccattcccaaattgttttattgtcttatgtaaacttccct
ttttgctgctctccttgttcctattcagcttctccgaaaatacttcagtc
tggtcattcgtttaatggaatttgtatgtacaggaatttgtattacagga
aaataaagtatcttgcttctctttcaggtttggaggacaggttttgagct
gaaaatagatctccaagaatcatgtttataataaaagttaccaacaatca
tacagccattagttaaccttcggacgtcaaggcgtcaggttagtatggcc
ctggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_36907611_36908849
seq2: B6Ng01-091P09.b_45_1262 (reverse)

seq1  AACCATATGAATGTAATGAGTGTGGGAAAGCCTTTAAACGACACAGAAGT  50
      |||||| |||| ||||||||||      |||      ||||||||| |||
seq2  AACCAT-TGAA-GTAATGAGTG-----GAGC-----TACGACACAG-AGT  37

seq1  TTTGTGCGCCAT--CAGAAAATCCATTCTGGTGAGAGACCCTTTCAGTGT  98
      || | || ||||  ||| |||||||| |  |||||||| ||||||||| |
seq2  TTGGCGC-CCATACCAG-AAATCCATCC--GTGAGAGATCCTTTCAGT-T  82

seq1  AAGGATTGTGGGAAGGGCTTCA-TTGTTCTTGCTCACCTCACTCCACTCG  147
      || || |||||  | |||| || ||||||| |||| ||   |||||||||
seq2  AA-GAATGTGG--AAGGCTCCATTTGTTCTGGCTCCCC---CTCCACTCG  126

seq1  GCACCAGGGCAGTCATAGTGAAGAGAAGCCATTTGAATGTGAGGAATGTG  197
      ||||||| |||||||||||||||||||||||||   ||||||||| ||||
seq2  GCACCAGAGCAGTCATAGTGAAGAGAAGCCATT--GATGTGAGGATTGTG  174

seq1  GCAAGAAATTCAGAACTGCCAGA-CACCTTGTTAAGCACCAGCGCATTCA  246
         ||||||| |||||||||||| ||||||||||||||||||||||||||
seq2  --CAGAAATTTAGAACTGCCAGACCACCTTGTTAAGCACCAGCGCATTCA  222

seq1  TAGCGGCGAGAAACCCTTTGAATGCAATGTATGTGGGAGTGCTTTCCGGC  296
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TAGCGGCGAG-AACCCTTTGAATGCAATGTATGTGGGAGTGCTTTCCGGC  271

seq1  TTCAACTATACCTTTCTGAGCATCAGAAAACTCACATGGAAGAGAAATAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTATACCTTTCTGAGCATCAGAAAACTCACATGGAAGAGAAATAC  321

seq1  TTGGAATGCAATGTGTGTGGGAAGGCTTTTCGGCTTCAGGTATACCTTTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATGCAATGTGTGTGGGAAGGCTTTTCGGCTTCAGGTATACCTTTC  371

seq1  TGAGCATCTGAAAACTCACACTGAAGAGAATCCTTTCAAGTGTAAGCTCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATCTGAAAACTCACACTGAAGAGAATCCTTTCAAGTGTAAGCTCT  421

seq1  GTGGGTCAGCCTTCCCAAATAAGTACCAACTTAATAAGCATCTCACAGTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTCAGCCTTCCCAAATAAGTACCAACTTAATAAGCATCTCACAGTT  471

seq1  CACACTGATGGGAAACCCTATCAGTGCAAGGAATGTGGCAAATGCTTTCG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGATGGGAAACCCTATCAGTGCAAGGAATGTGGCAAATGCTTTCG  521

seq1  TCAAAGGTCAAAACTAACGGAACATGAGAGTATTCACACTGGCAAGAAAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGTCAAAACTAACGGAACATGAGAGTATTCACACTGGCAAGAAAC  571

seq1  CCTTCCAGTGTGAAGAATGTGGGAAGTTCTTTAGACTTAACACACTTCTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAGTGTGAAGAATGTGGGAAGTTCTTTAGACTTAACACACTTCTC  621

seq1  ATTCATCATCAGAAGTCTCACAGTGGTGAGAGACCTTTTGAATGTAAAGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCATCAGAAGTCTCACAGTGGTGAGAGACCTTTTGAATGTAAAGA  671

seq1  ATGCGGAAAGGCTTTCCTTCTTCCCAGTCAACTTAATAGCCATAAAATTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGGAAAGGCTTTCCTTCTTCCCAGTCAACTTAATAGCCATAAAATTG  721

seq1  TTCATACAAGTAACAGACCCTTTGAATGCAAGGTATGTGGGAAGTCCTTC  796
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTCATACAAGTAAAAGACCCTTTGAATGCAAGGTATGTGGGAAGTCCTTC  771

seq1  AAGCGTGAATCCAATCTCATTCAACATGGCGCTGTTCATGCTGGTGTGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGTGAATCCAATCTCATTCAACATGGCGCTGTTCATGCTGGTGTGAA  821

seq1  ATCATATGAATGCAGTGAGTGTGGGAAAGGTTTTATTCACCGCTCAAGCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATGAATGCAGTGAGTGTGGGAAAGGTTTTATTCACCGCTCAAGCC  871

seq1  TGTTCCACCATCGGAAAATTCATTCTGATGAGAAACCGTTTAAGTGTCAG  946
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGTTCCACCATCGGAAAATTCATTCTGATGAGAAACCATTTAAGTGTCAG  921

seq1  GAGTGTGGAAAGGCCTTCGTTGTTCTGGCGTATCTCATTCAGCATCAGAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGGAAAGGCCTTCGTTGTTCTGGCGTATCTCATTCAGCATCAGAG  971

seq1  CATCCACACTGGAGAGAAACCATTTGAATGTGAGCTGTGTGGGTCAGCCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACACTGGAGAGAAACCATTTGAATGTGAGCTGTGTGGGTCAGCCT  1021

seq1  TCAGATGTAGATCCCAACTCAATAAACATCTGAGAATTCATACTGATGTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGTAGATCCCAACTCAATAAACATCTGAGAATTCATACTGATGTG  1071

seq1  AAACTCTTTCAGTGTGTGGAAGATTGA----ACATTGTTCGTGGAACAGA  1142
      |||||||||||||||||||||||||||    |||||||||||||||||||
seq2  AAACTCTTTCAGTGTGTGGAAGATTGAACAGACATTGTTCGTGGAACAGA  1121

seq1  GCTTAGGGAGTCCACACTGGTGAGAAGCTCGTTCAGTGTAGTAGATATGG  1192
      |||||||||||||||||||||||||||||||||||||||| | |||||||
seq2  GCTTAGGGAGTCCACACTGGTGAGAAGCTCGTTCAGTGTAATGGATATGG  1171

seq1  GGAAGCTCTTTAATATCTTTACAAAATTCTTAGACATGTTAGAATTC  1239
      ||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGAAGCTCTTTGATATCTTTACAAAATTCTTAGACATGTTAGAATTC  1218

seq1: chr7_28532207_28533323
seq2: B6Ng01-091P09.g_67_1171

seq1  GAATTCAAAGTTAGATTAAATGAATTTATTTGTACTGCTAGCAGAAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTTAGATTAAATGAATTTATTTGTACTGCTAGCAGAAGGAA  50

seq1  GACAGCCTAAGAGCCAGAGAGTGTGTCCAGTGGAAGAGGTGGTAAGGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCTAAGAGCCAGAGAGTGTGTCCAGTGGAAGAGGTGGTAAGGTGG  100

seq1  GGTCTTACTCATCAGGAAGGTGGGCATTATAACTCTTCATCAGTCCACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTACTCATCAGGAAGGTGGGCATTATAACTCTTCATCAGTCCACAT  150

seq1  CTGGGCAGCTGTTTGACTTCCCTCAGTTGTTCCTTCTTTTCTGCTGTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAGCTGTTTGACTTCCCTCAGTTGTTCCTTCTTTTCTGCTGTGGA  200

seq1  ATAAAACATTCTTACAGACATCAACGAGTTCTTTTTGTCTTTTGGTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACATTCTTACAGACATCAACGAGTTCTTTTTGTCTTTTGGTTTTG  250

seq1  TTGTTTCTTCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTTTTTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTTCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTTTTTTTTTT  300

seq1  TTTTATTTTTATTTTTGAAGAGATAAGCAGGTTTTACAGATGCACAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTTATTTTTGAAGAGATAAGCAGGTTTTACAGATGCACAGGCA  350

seq1  GTGTTAACACCTCACAGCCCATTATCCTATTCTTATTCATTTGCAGGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAACACCTCACAGCCCATTATCCTATTCTTATTCATTTGCAGGCTA  400

seq1  CTAGGATCACCTTTTGCTGTATGGTTTGTATGCTCTTCCAGAGCAAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATCACCTTTTGCTGTATGGTTTGTATGCTCTTCCAGAGCAAAAGG  450

seq1  TTATTAGTCATTAAGGGAATCCTGGTTCCATATTAAGTTTCCATAGCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGTCATTAAGGGAATCCTGGTTCCATATTAAGTTTCCATAGCCAT  500

seq1  CACAGAAGACCTGTATACATTATTATTCAGTTCTGACCACTCCTATTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAGACCTGTATACATTATTATTCAGTTCTGACCACTCCTATTACT  550

seq1  GGGATAAAGCAGTTCATTGCTGGACAGGCAACAAAATCAATGCCATCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAAAGCAGTTCATTGCTGGACAGGCAACAAAATCAATGCCATCAGG  600

seq1  TTAGGACCAGCTGTCATGTCCCCACAGGTTCAAAAAAAACTTCACTGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGACCAGCTGTCATGTCCCCACAGGTTCAAAAAAAACTTCACTGAAG  650

seq1  GGTGTGACAGTTATATATTTATGTGGTATAGATATTTTATTCTCCATGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGACAGTTATATATTTATGTGGTATAGATATTTTATTCTCCATGAT  700

seq1  CTGGTTCAGAAACCTTCACTAACTTGTATGGATTTCTTGTAGTATGCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCAGAAACCTTCACTAACTTGTATGGATTTCTTGTAGTATGCAAA  750

seq1  GAAGCACTTAAGATTATTACAGTTTAGTTCATTATAATCCCATTAAGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACTTAAGATTATTACAGTTTAGTTCATTATAATCCCATTAAGCAA  800

seq1  ACATGACTTCCCATTCCCAAATTGTTTTATTGTCTTATGTAAACTTCCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACTTCCCATTCCCAAATTGTTTTATTGTCTTATGTAAACTTCCCT  850

seq1  TTTTGCTGCTCTCCTTGTTCCTATTCAGCTTCTCCGAAAATACTTCAGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTGCTCTCCTTGTTCCTATTCAGCTTCTCCGAAAATACTTCAGTC  900

seq1  TGGTCATTCGTTTAATGGAATTTGTATGTACAGGAATTTGTATTACAGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATTCGTTTAATGGAATTTGTATGTACAGGAATTTGTATTACAGGA  950

seq1  AAATAAAGTATTCTTGCTTTCTCCTTTCAGGTTTGGA-GACAGGTTTTGA  999
      |||||||||| |||||| |||| |||||||||||||| ||||||||||| 
seq2  AAATAAAGTA-TCTTGC-TTCT-CTTTCAGGTTTGGAGGACAGGTTTTG-  996

seq1  AGCTGAAAATAGATCTCCAAAGAATCATGTTTATAATAAAAAGTTACCCA  1049
      |||||||||||||||||| |||||||||||||||||| ||||||||||  
seq2  AGCTGAAAATAGATCTCC-AAGAATCATGTTTATAAT-AAAAGTTACC--  1042

seq1  AACAAACCATACAGCAATTAAGTAAAACTTCGGACGTCCAGGGCGTCAGT  1099
      ||| || |||||||| ||| ||| || |||||||||| || |||||||| 
seq2  AAC-AATCATACAGCCATT-AGTTAACCTTCGGACGT-CAAGGCGTCAG-  1088

seq1  GTTAGTAATGGCCCTGGC  1117
      |||||| |||||||||||
seq2  GTTAGT-ATGGCCCTGGC  1105