BAC Information

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BAC

Clone NameB6Ng01-092E13
Chromosome6 (Build37)4 (Build37)
Map Location 85,609,809 - 85,610,33934,949,274 - 34,950,388
singlet/doubletsingletsinglet
Overlap geneAlms1
Upstream geneExoc6b, LOC665129, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4
Downstream geneLOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092E13.bB6Ng01-092E13.g
ACCDH904088DH904089
length8841,103
definitionDH904088|Mus musculus domesticus DNA, BAC clone: B6Ng01-092E13, 5' end.DH904089|Mus musculus domesticus DNA, BAC clone: B6Ng01-092E13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(85,609,809 - 85,610,339)(34,949,274 - 34,950,388)
sequence
gaattcctgatctttccaagacttttatcatgaatgggtgttggattttg
acaaatgctttctcctcatctaacgagatgatcatgtggtttttgtcttt
gagtttatataatggattacattgatggatttccgtatattgaaccatct
ctgcatccctggaataaaacctacttggtcaggatggatgattgttttga
tgagttcttggattcagttagtgagaattttactgagtatttttgcatca
atattcataagggaaattggtctgaagttctctatctttgttggttcttt
ctgtggtttaggtatcagagtaattgtggcttcatagaatgagttgggta
gagtaccttctgcttctgttttgtggaatagtttgtgaagaactggaatt
agatcttctttgaaggtctgatagaactctgcactaaacccatctggtcc
tgggattttttttggttgggagactattaatgactgcttctatttcttta
ggggatataggactgtttagatcattaacctgatcttgatttaactttgg
tacctggtatctgtctagaaacttgtccatttcatccaggttctccagtt
ttgttgagtatagccttttgtagaaggatctgatggtgttttggattttc
ttcaggatctgttgttatgtctcccttttcatttctgattttgttaatta
gaatactttccctgtggcctctagtgagtctggctaagggtttatctatc
ttgttgattttctctaaaaaccatctccttgattggttgattcttgaata
gttcttcttgtttccacttggttgatttcacccctgaatttgattgtttc
ctgccgtctactcctcttgggtgattttgcttct
gaattctttcagcaatgattcactgcaaacccgacatgcagatttaacca
ttactcagacaggctggtagatgaccttgtacatcttccagtctctgaca
ctttccttgactaggctcacagggtgacttaacatccatagcttacatgt
aaacagctcatatacattttgcaccatacttcatagatctgtttgcttaa
taggcaatattagaattttcaattctcggtgttgtttcacagtactaaat
ttctcggcagtgtacatagctcagacggagaagtggggagagaggcctgg
gacactcaagctgcacacagtatctttccttggggtagacagtaggtgca
acactaactgtacatttaaatgatcaaggaaacaaagaacaaaccgaaag
gcagtggcccacatttttaacagccgagtctgaaaccccagtgaattttc
aagcatgtctcctggaccagcagcactaacgatatctaagaacatgtcag
aactggttctcaggacctgatctaacagcactgcatcaaacactctggag
acttagcatgtcttcctgactgtgatcctgagtgcagtgagacgagcaca
tgtctgaatgttctttgttcacatgtgacctatagagatcacctgcataa
ccaagcaagggggttggctagagagtcacagaatacgctgtcacacagat
ttgcattcaaatccctcacgctcagtttccctaggtgggacaccgacatt
aacagaatctactttgttggatggttgtgagaaccgagtggaaataaaaa
cagaacaaatactgcaaggtatcccaaagtgcacagagcttggtcagcat
ttgccgttctgattgtcttcagagagtgggctagtggccagagaccagga
agcctcacagtggaggaggctggccatctaagcaaagacttgtttctgac
tcctaagctgagatatagctctactcacaaaggcacgagcggctgtgttt
cagtgggtcttacttgctgtacacagagacatgaacaaggcactctttaa
agagacaactttaaatgagcttggcttgcagaggtccagtctctatcatc
aag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_85609809_85610339
seq2: B6Ng01-092E13.b_394_926 (reverse)

seq1  GAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAG  50
      |||||||| |||||||||||||||||||||||||||| ||||||| ||||
seq2  GAAGCAAAATCACCCAAGAGGAGTAGACGGCAGGAAACAATCAAATTCAG  50

seq1  GGACGAAATCAACCAAGTGGAAAC---AAGAACTATTCAAAGAATCAACC  97
      ||  ||||||||||||||||||||   ||||||||||| |||||||||||
seq2  GGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTC-AAGAATCAACC  99

seq1  AATCGAGGAGCTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTA  147
      |||| ||||| ||||| || ||||||||||||||||||||||||||||||
seq2  AATCAAGGAGATGGTTTTTAGAGAAAATCAACAAGATAGATAAACCCTTA  149

seq1  GCTAGACTCACTAGAGGGCACAGGGAAAGCATCCTAATTAACAAAATCAG  197
      || |||||||||||||| ||||||||||| || |||||||||||||||||
seq2  GCCAGACTCACTAGAGGCCACAGGGAAAGTATTCTAATTAACAAAATCAG  199

seq1  AAATGAAAAGGGAGATATAACAACAGATCCTGAAG-AAATCCAAAACACC  246
      ||||||||||||||| ||||||||||||||||||| ||||||||||||||
seq2  AAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAAATCCAAAACACC  249

seq1  ATCAGATCCTTCTACAAAAGGCTATACTCATCAAAACTGGAGAACCTGGA  296
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAGAACCTGGA  299

seq1  TGAAATGGACACGTTTCTAGACAGATACCAGGTACCAAAGTTAAATCAAG  346
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGGACAAGTTTCTAGACAGATACCAGGTACCAAAGTTAAATCAAG  349

seq1  ATCAGGTTAATGATCTAAACAGTCCTATATCCCCTAAAGAAATAGAAGCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGTTAATGATCTAAACAGTCCTATATCCCCTAAAGAAATAGAAGCA  399

seq1  GTCATTAATAGTCTCCCAACCAAAAAAAAAGCCCAGGACCAAATGGGTTT  446
      ||||||||||||||||||||| |||||||| |||||||||| ||||||||
seq2  GTCATTAATAGTCTCCCAACC-AAAAAAAATCCCAGGACCAGATGGGTTT  448

seq1  AGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATCCCAGTTCTTCA  496
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTTCA  498

seq1  CAAACTATTCCACAAAATAGAAACAGAAGGTACTC  531
      ||||||||||||||||| |||| ||||||||||||
seq2  CAAACTATTCCACAAAACAGAAGCAGAAGGTACTC  533

seq1: chr4_34949274_34950388
seq2: B6Ng01-092E13.g_70_1172

seq1  GAATTCTTTCAGCAATGATTCACTGCAAACCCGACATGCAGATTTAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAGCAATGATTCACTGCAAACCCGACATGCAGATTTAACCA  50

seq1  TTACTCAGACAGGCTGGTAGATGACCTTGTACATCTTCCAGTCTCTGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCAGACAGGCTGGTAGATGACCTTGTACATCTTCCAGTCTCTGACA  100

seq1  CTTTCCTTGACTAGGCTCACAGGGTGACTTAACATCCATAGCTTACATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTGACTAGGCTCACAGGGTGACTTAACATCCATAGCTTACATGT  150

seq1  AAACAGCTCATATACATTTTGCACCATACTTCATAGATCTGTTTGCTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCTCATATACATTTTGCACCATACTTCATAGATCTGTTTGCTTAA  200

seq1  TAGGCAATATTAGAATTTTCAATTCTCGGTGTTGTTTCACAGTACTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAATATTAGAATTTTCAATTCTCGGTGTTGTTTCACAGTACTAAAT  250

seq1  TTCTCGGCAGTGTACATAGCTCAGACGGAGAAGTGGGGAGAGAGGCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCGGCAGTGTACATAGCTCAGACGGAGAAGTGGGGAGAGAGGCCTGG  300

seq1  GACACTCAAGCTGCACACAGTATCTTTCCTTGGGGTAGACAGTAGGTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTCAAGCTGCACACAGTATCTTTCCTTGGGGTAGACAGTAGGTGCA  350

seq1  ACACTAACTGTACATTTAAATGATCAAGGAAACAAAGAACAAACCGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAACTGTACATTTAAATGATCAAGGAAACAAAGAACAAACCGAAAG  400

seq1  GCAGTGGCCCACATTTTTAACAGCCGAGTCTGAAACCCCAGTGAATTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGCCCACATTTTTAACAGCCGAGTCTGAAACCCCAGTGAATTTTC  450

seq1  AAGCATGTCTCCTGGACCAGCAGCACTAACGATATCTAAGAACATGTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGTCTCCTGGACCAGCAGCACTAACGATATCTAAGAACATGTCAG  500

seq1  AACTGGTTCTCAGGACCTGATCTAACAGCACTGCATCAAACACTCTGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGTTCTCAGGACCTGATCTAACAGCACTGCATCAAACACTCTGGAG  550

seq1  ACTTAGCATGTCTTCCTGACTGTGATCCTGAGTGCAGTGAGACGAGCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCATGTCTTCCTGACTGTGATCCTGAGTGCAGTGAGACGAGCACA  600

seq1  TGTCTGAATGTTCTTTGTTCACATGTGACCTATAGAGATCACCTGCATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAATGTTCTTTGTTCACATGTGACCTATAGAGATCACCTGCATAA  650

seq1  CCAAGCAAGGGGGTTGGCTAGAGAGTCACAGAATACGCTGTCACACAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCAAGGGGGTTGGCTAGAGAGTCACAGAATACGCTGTCACACAGAT  700

seq1  TTGCATTCAAATCCCTCAGGCTCAGTTTCCCTAGGTGGGACACCGACATT  750
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTGCATTCAAATCCCTCACGCTCAGTTTCCCTAGGTGGGACACCGACATT  750

seq1  AACAGAATCTACTTTGTTGGATGGTTGTGAGAACCGAGTGGAAATAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAATCTACTTTGTTGGATGGTTGTGAGAACCGAGTGGAAATAAAAA  800

seq1  CAGAACAAAATACTGCAAGGTATCCCAAAGTGCACAGAGCTTGGTCAGCA  850
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAC-AAATACTGCAAGGTATCCCAAAGTGCACAGAGCTTGGTCAGCA  849

seq1  TTTGCCGTTCTGATTGTCTTCAGAGAGTTGGCTAGTGGCCAAGAGACCAG  900
      |||||||||||||||||||||||||||| ||||||||||| |||||||||
seq2  TTTGCCGTTCTGATTGTCTTCAGAGAGTGGGCTAGTGGCC-AGAGACCAG  898

seq1  GAAGCCTCACAGGTGGAGGAGGCTGGCCATCTAAAGCAGAGACTTGTTTT  950
      ||||||||||| |||||||||||||||||||| ||||| ||||||| |||
seq2  GAAGCCTCACA-GTGGAGGAGGCTGGCCATCT-AAGCAAAGACTTG-TTT  945

seq1  CTGACTCCTAAGCTGAGATATCAGCTCTACTCACCAAAGGCACGAGCGGC  1000
      ||||||||||||||||||||| ||||||||||| ||||||||||||||||
seq2  CTGACTCCTAAGCTGAGATAT-AGCTCTACTCA-CAAAGGCACGAGCGGC  993

seq1  TTGTGTTTCAGTGGGGGTCTTAC-TGCTGTACACAGAGACCATGAACAAG  1049
       |||||||||||  ||||||||| ||||||||||||||| ||||||||||
seq2  -TGTGTTTCAGT--GGGTCTTACTTGCTGTACACAGAGA-CATGAACAAG  1039

seq1  GCAACACTTATAAG-GACAACATTTAATAGAGGCTGGCTTGCAGAGGTCC  1098
      || || |||  ||| |||||| |||||  |||  ||||||||||||||||
seq2  GC-ACTCTTTAAAGAGACAAC-TTTAAATGAGCTTGGCTTGCAGAGGTCC  1087

seq1  AGTCCACTATCATCAAG  1115
      ||| | |||||||||||
seq2  AGT-CTCTATCATCAAG  1103