BAC Information

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BAC

Clone NameB6Ng01-093N06
Chromosome6 (Build37)3 (Build37)
Map Location 18,835,427 - 18,835,9686,133,506 - 6,134,299
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093N06.bB6Ng01-093N06.g
ACCDH905206DH905207
length951792
definitionDH905206|Mus musculus domesticus DNA, BAC clone: B6Ng01-093N06, 5' end.DH905207|Mus musculus domesticus DNA, BAC clone: B6Ng01-093N06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,427 - 18,835,968)(6,133,506 - 6,134,299)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagagcaagccattgctgtt
ctgttcaggaatttttcccctgtacccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
cctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagacttgaagtttttatcata
cagatcttttacttcttagttagagtcacgccgagatattttatattatt
t
gaattcatcccagaaaaccaaatggacataattggtgggtggatagatcc
tggagagctcagccccaatgggtatatttatggcaaaatgagaagtcttt
tcattcagtgaaaatggccaggaatctgatgaacgttaaaagaaatatga
gatatcagcattaattaaagcaaatttcaaaccatgatttgtagtaaagg
aatacgttaagagtacttaaaaacattggttttactaaaatgagaggaac
atataggagaaattaatttctatcactgaaaacaaaataaacagaaccag
tttttaacagagattaagatttaaaacaaagaattaaatgtgggaatgag
tcaacacctaagccatttaaaaataaagtggagagaaaatagaagctatc
aggaagaaaaagaaagacatatgaatgacctaattgatttttccaatctg
aatatatgcattatccaagaaatatactatatagaatgagacagaattga
ttttaaaaggtagcaatgattttcctaatcagatggaccataaaatccac
agataaacagtattaataaggattatcacatcaccacagccagaatgttg
atattccaagtaaaaagagcagtttaaaaaacagagaaaataagtagagt
atataaataggagcgctatctgtcatggagcaaaaatttaagagaatata
tgaatatgaaaaaatagaaagtattaaaatattttatcttatgtaggata
aatgaaaaaaaacaaaaagttgcaaaagggaaagtgtttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835427_18835968
seq2: B6Ng01-093N06.b_44_586 (reverse)

seq1  AATAGAATTGAAGACCCAGAGATGAACCCACACACCTATGGTCACTTGAT  50
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGAT  50

seq1  CTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCA  100

seq1  ACAATTGGTGCTGGCACAACTGGTTGTTATCTTGTAGAAGAATGTGAATC  150
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  ACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATC  150

seq1  GATCCATACTTATCTCCATGTACTAAGGTCAAATCTAAGTGGATCAAGGA  200
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGA  200

seq1  ACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGA  250

seq1  AAAGCCTTGAAGATATGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCA  300
      ||||||||||||||||||| | ||||||||| ||||||||||||||||||
seq2  AAAGCCTTGAAGATATGGGTACAGGGGAAAAATTCCTGAACAGAACAGCA  300

seq1  ATGGC-TGTGCTGTGAGGTAGAGAATCGACAAATGGGACCTAATGAAACT  349
      ||||| ||  |||| || | |||||| |||||||||||||||||||||||
seq2  ATGGCTTGCTCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACT  350

seq1  CCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCAC  400

seq1  CAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTA  450

seq1  ATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAA  500

seq1  TAACCCCATTAATAAATGGGGCTCAGAACTGAACAAAGAATTC  542
      |||||||||||| ||||||||||||||||||||||||||||||
seq2  TAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  543

seq1: chr3_6133506_6134299
seq2: B6Ng01-093N06.g_68_859 (reverse)

seq1  AAAAAAAACTTTCCCTTTTGCAACTTTTTGTTTTTTTTCATTTATCCTAC  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACACTTTCCCTTTTGCAACTTTTTGTTTTTTTTCATTTATCCTAC  50

seq1  ATAAGATAAAATATTTTAATACTTTCTATTTTTTCATATTCATATATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATAAAATATTTTAATACTTTCTATTTTTTCATATTCATATATTCT  100

seq1  CTTAAATTTTTGCTCCA-------------TCCTATTTTAATACTATCTC  137
      |||||||||||||||||             ||||||||  ||||| |   
seq2  CTTAAATTTTTGCTCCATGACAGATAGCGCTCCTATTTATATACTCT---  147

seq1  CTAACTTTATTTTTCTCTGTTTTTTTTTAAAGCTGTCTCTTTTATATCTT  187
         ||||   |||||||||||||||    || ||| ||||||| || |||
seq2  ---ACTT--ATTTTCTCTGTTTTTT----AAACTG-CTCTTTT-TA-CTT  185

seq1  TGAATATCAACATTCTGGCTGTGGTGATGTGATAATCCTTATTAATACTG  237
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATCAACATTCTGGCTGTGGTGATGTGATAATCCTTATTAATACTG  235

seq1  TTTATCTGTGGATTATATGGTCCATCTGATTAGGAAAATCATTGCTACCT  287
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTTATCTGTGGATTTTATGGTCCATCTGATTAGGAAAATCATTGCTACCT  285

seq1  TTTAAAATCAATTCTGTCTCATTCTATATAGTATATTTCTTGGATAATGC  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATCAATTCTGTCTCATTCTATATAGTATATTTCTTGGATAATGC  335

seq1  ATATATTCAGATTGGAAAAATCAATTAGGTCATTCATATGTCTTTCTTTT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTCAGATTGGAAAAATCAATTAGGTCATTCATATGTCTTTCTTTT  385

seq1  TCTTCCTGATAGCTTCTATTTTCTCTCCACTTTATTTTTAAATGGCTTAG  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTGATAGCTTCTATTTTCTCTCCACTTTATTTTTAAATGGCTTAG  435

seq1  GTGTTGACTCATTCCCACATTTAATTCTTTGTTTTAAATCTTAATCTCTG  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGACTCATTCCCACATTTAATTCTTTGTTTTAAATCTTAATCTCTG  485

seq1  TTAAAAACTGGTTCTGTTTATTTTGTTTTCAGTGATAGAAATTAATTTCT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAACTGGTTCTGTTTATTTTGTTTTCAGTGATAGAAATTAATTTCT  535

seq1  CCTATATGTTCCTCTCATTTTAGTAAAACCAATGTTTTTAAGTACTCTTA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATATGTTCCTCTCATTTTAGTAAAACCAATGTTTTTAAGTACTCTTA  585

seq1  ACGTATTCCTTTACTACAAATCATGGTTTGAAATTTGCTTTAATTAATGC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTATTCCTTTACTACAAATCATGGTTTGAAATTTGCTTTAATTAATGC  635

seq1  TGATATCTCATATTTCTTTTAACGTTCATCAGATTCCTGGCCATTTTCAC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATCTCATATTTCTTTTAACGTTCATCAGATTCCTGGCCATTTTCAC  685

seq1  TGAATGAAAAGACTTCTCATTTTGCCATAAATATACCCATTGGGGCTGAG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAAAAGACTTCTCATTTTGCCATAAATATACCCATTGGGGCTGAG  735

seq1  CTCTCCAGGATCTATCCACCCACCAATTATGTCCATTTGGTTTTCTGGGA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGGATCTATCCACCCACCAATTATGTCCATTTGGTTTTCTGGGA  785

seq1  TGAATTC  794
      |||||||
seq2  TGAATTC  792