BAC Information

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BAC

Clone NameB6Ng01-094H10
Chromosome6 (Build37)
Map Location 16,264,298 - 16,265,405
singlet/doubletsinglet
Overlap genenone
Upstream geneFoxp2, Mdfic, LOC100041116
Downstream geneTcfec, EG435881, Tes, EG232599, Cav2, Cav1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094H10.bB6Ng01-094H10.g
ACCDH905679DH905680
length5871,091
definitionDH905679|Mus musculus domesticus DNA, BAC clone: B6Ng01-094H10, 5' end.DH905680|Mus musculus domesticus DNA, BAC clone: B6Ng01-094H10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tctctctctctctctctctctctctctctctctctctctctctgtctcta
ttatttaatctaataattatttaattttcttatttttttcaatactggtc
ctttgcataaatatgatagtttccagttctgtatttttacaggattcatg
actgtggaaatgagtggatccgtgtctatttctgttccttgtgcctttta
tttttaggcagttctccttttgtttgtttgcttgtttcctattgtgatac
attttcttatattttattagattacattttattgctagccattagatgcc
tgtttgttttctagtgaaagacaggttgggggtgatccagataggtgtga
gatgaagaagaactgggagaggtggaatatgaaaacctcatgaaaatata
gtgaataaagatattttaacccaaataaaacactcattcttttaaactac
ctgaaagcccaggatcaaagctcctcttgtctccaattccacaggtctgg
gaattaaattgttcaccactacacctgtcctttatgtggaagtaggaaat
tcacctcaaccccttatatctgctatcaggaactttg

gaattctcatttacttgttcaatgcaaaaattatctttgtaaaagagaaa
aacacatcttcaagtgtcagctatattaaattaaagaactgtttaccctt
cctaagaaaagcatatgtatctaaataggcatcttttaccgtttgcatag
tagattggaaattagcatttttgttcattttcccatgtatgcacagtgcc
tggaagagtaatactccatgcatatcagatcagccagcctacaatttttg
tgcaatatattatttggcaatctaaaatttgtaatttgcatgaaattgct
taattaaaatacagtcactcagggtattaatttctctgtctggcagttca
atgtactaaaggcgggctacagaaaatgtgaaatcctgtcagatgtaaca
gtaaaatattaacaaaaaaaattccacttctggcaacaaagtgacagagc
gataatgcttttgccctgattctaggttcaagtatgagcttaggttgaca
ttgaaaccgactaggaaatttacaatagcaactctggctttttgccagga
acctgcatggtccttgatgaaaactcttttgctataacttctgcatccat
gcagacttgtacacacaatcccaaccacgtatacaggttcttcaacacac
acagatacatgcacacgagtgcacgcgcgcgctcgcgcgcgcgcacacac
acacacacacacacacacacacacccctgttttcttttctctcttctaac
ttcattgctattttccagtagcttttgcttctctgtatttgaaatcatca
gcaactgtactgataaatgatccagtcagtccttctcagttgtcaagaca
acagttcataattgtactggttctattcattgaagccagacatttcataa
tagataattctctaattgatccagccatcctactttgcatagtgtgccaa
tagtaaacccaatttctattgccattgcctcaagttctcaagacatgcaa
tgaacttatttaccgcccttctagagagacttttaaaatactgcctttat
ttcatattaaataacctagattaaagaggtaataccacttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_16264298_16265405
seq2: B6Ng01-094H10.g_69_1159

seq1  GAATTCTCATTTACTTGTTCAATGCAAAAATTATCTTTGTAAAAGAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTTACTTGTTCAATGCAAAAATTATCTTTGTAAAAGAGAAA  50

seq1  AACACATCTTCAAGTGTCAGCTATATTAAATTAAAGAACTGTTTACCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATCTTCAAGTGTCAGCTATATTAAATTAAAGAACTGTTTACCCTT  100

seq1  CCTAAGAAAAGCATATGTATCTAAATAGGCATCTTTTACCGTTTGCATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGAAAAGCATATGTATCTAAATAGGCATCTTTTACCGTTTGCATAG  150

seq1  TAGATTGGAAATTAGCATTTTTGTTCATTTTCCCATGTATGCACAGTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTGGAAATTAGCATTTTTGTTCATTTTCCCATGTATGCACAGTGCC  200

seq1  TGGAAGAGTAATACTCCATGCATATCAGATCAGCCAGCCTACAATTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAGTAATACTCCATGCATATCAGATCAGCCAGCCTACAATTTTTG  250

seq1  TGCAATATATTATTTGGCAATCTAAAATTTGTAATTTGCATGAAATTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATATATTATTTGGCAATCTAAAATTTGTAATTTGCATGAAATTGCT  300

seq1  TAATTAAAATACAGTCACTCAGGGTATTAATTTCTCTGTCTGGCAGTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAAATACAGTCACTCAGGGTATTAATTTCTCTGTCTGGCAGTTCA  350

seq1  ATGTACTAAAGGCGGGCTACAGAAAATGTGAAATCCTGTCAGATGTAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTAAAGGCGGGCTACAGAAAATGTGAAATCCTGTCAGATGTAACA  400

seq1  GTAAAATATTAACAAAAAAAATTCCACTTCTGGCAACAAAGTGACAGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATATTAACAAAAAAAATTCCACTTCTGGCAACAAAGTGACAGAGC  450

seq1  GATAATGCTTTTGCCCTGATTCTAGGTTCAAGTATGAGCTTAGGTTGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATGCTTTTGCCCTGATTCTAGGTTCAAGTATGAGCTTAGGTTGACA  500

seq1  TTGAAACCGACTAGGAAATTTACAATAGCAACTCTGGCTTTTTGCCAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACCGACTAGGAAATTTACAATAGCAACTCTGGCTTTTTGCCAGGA  550

seq1  ACCTGCATGGTCCTTGATGAAAACTCTTTTGCTATAACTTCTGCATCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCATGGTCCTTGATGAAAACTCTTTTGCTATAACTTCTGCATCCAT  600

seq1  GCAGACTTGTACACACAATCCCAACCACGTATACAGGTTCTTCAACACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACTTGTACACACAATCCCAACCACGTATACAGGTTCTTCAACACAC  650

seq1  ACAGATACATGCACACGAGTGCACGCGCGCGCTCGCGCGCGCGCACACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATACATGCACACGAGTGCACGCGCGCGCTCGCGCGCGCGCACACAC  700

seq1  ACACACACACACACACACACACACCCCTGTTTTCTTTTCTCTCTTCTAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACCCCTGTTTTCTTTTCTCTCTTCTAAC  750

seq1  TTCATTGCTATTTTCCAGTAGCTTTTGCTTCTCTGTATTTGAAATCATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGCTATTTTCCAGTAGCTTTTGCTTCTCTGTATTTGAAATCATCA  800

seq1  GCAACTGTACTGATAAATGATCCAGTCAGTCCTTCTCAGTTGTCAAGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGTACTGATAAATGATCCAGTCAGTCCTTCTCAGTTGTCAAGACA  850

seq1  ACAGTTCATAATTGTACTGGTTCTATTCATTGAAGCCAGACATTTCATAA  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACAGTTCATAATTGTACTGGTTCTATTCATTGAAGCCAGACATTTCAT-A  899

seq1  ATAGATAATTCTCTAATTGATCCAGCCAATCCTACTTTGCATAGTGTGCC  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATAGATAATTCTCTAATTGATCCAGCC-ATCCTACTTTGCATAGTGTGCC  948

seq1  AAATAGGTAAACCCAATTTCTATTGCCATTGCCTCAAGTTTCTCAAAAGA  1000
       |||| |||||||||||||||||||||||||||||||| |||||  ||||
seq2  -AATA-GTAAACCCAATTTCTATTGCCATTGCCTCAAG-TTCTC--AAGA  993

seq1  CATGCAAATGAACTTATTTA-CGGCCTTCTAAGAGAGACTTTTAAAAAAT  1049
      ||||| |||||||||||||| || |||||| ||||||||||||  |||||
seq2  CATGC-AATGAACTTATTTACCGCCCTTCT-AGAGAGACTTTT--AAAAT  1039

seq1  ACTTGCTTTTATTTCATATTAAAATAAACCTAGAATTTAAAAGAGGTAAA  1099
      || ||| ||||||||||||||||   ||||||||   | |||||||| ||
seq2  AC-TGCCTTTATTTCATATTAAA--TAACCTAGA---TTAAAGAGGT-AA  1082

seq1  TACCACTTG  1108
      |||||||||
seq2  TACCACTTG  1091


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