BAC Information

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BAC

Clone NameB6Ng01-094O24
Chromosome6 (Build37)
Map Location 118,353,341 - 118,484,887
singlet/doubletdoublet
Overlap geneBms1, Zfp248, Zfp9, Ankrd26
Upstream geneLOC100043777, LOC621462, EG640370, EG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338, Rasgef1a, Galnact2, Ret, 1700069P05Rik
Downstream geneCacna1c, Dcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094O24.bB6Ng01-094O24.g
ACCDH906017DH906018
length1,1571,076
definitionDH906017|Mus musculus domesticus DNA, BAC clone: B6Ng01-094O24, 5' end.DH906018|Mus musculus domesticus DNA, BAC clone: B6Ng01-094O24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,353,341 - 118,354,512)(118,483,802 - 118,484,887)
sequence
gaattcaagggactgtgggtctctggtccttatagacatgtagtatccct
gggacactcactaagagccaaaaggtccaaaagctaaaaatctaccattt
tatatgtctgggagacttatcctcttgcaaagcagcagcagagaccacgg
aggagtgaaaatattggagctgggaggggaagccatttaaagggaaagct
cttctatgcacagctcccttagaactgcccatcactaaatgtctagaagc
aaaatctaaatgaaaattagtacagatcacttgccaattttcttatcaag
gggcaacttatacctgtacttttttttcaaaaagagcttataaacaagtt
taataaattagaaaaataagtgaacataggcaaagagggctctcattctc
acaagggggacatctttcatagttccaacactaaacttaacaaacaaatc
tcatgaagaactttataaagtgacataacgaatgtcagtctcattaacac
tgccaaagcatctgagcaatctatgttgtgagaccaatttacagtccttg
tgacgtgactgtaaatacctgccaaggccaacaaaggctcagcaggtaag
gacgcttagcgcagcagcctggggacctgagctggatcctgaaaaccaat
aaaaggtggacagagaaccagctccacacattggtcctctgcctctacac
atacacttggcatcaacgctctccacaccataaacgtgtacacacacaca
cacagcaagtaaataaaaagcttaaaatatgttgtaaaaatgtctggtaa
atacataaaagctgagccaaaagtaacacaggtcaaagtctactcccaat
ttttatgtcaacgccctccttccttctcagaaaatactctatgaacctaa
aacattttgagctctaaaccagagttctttacctgtcccataaatcagct
ttcgagattcgagctgcttgctgctgcctgagaaagcctctgctgctttt
ctgaaaggtcttcctttccacttcagagcactgagaaaccaacacccggt
tacatatgctcactggcccctgctcaacccaaagttcactcatctagcat
tgttcatgacatactcagtcgttaccaatccaaagacgaactcaaagtgc
agaaccc
gaattcccatagaaaaagcccaaggtagacatgtgtgttggtaactgcag
caccgaggggcagaagtagcagagtgtgggagctcagtaaccccacaaca
taacctttgaactattcgctgagccagcatataaaatacctccatcgcct
ggcagagaatcacagctctgcagtgaggcctcggtactgggctactaggt
gatacgctttaccgttctaatttgatgtatcgtcagaacctggcaaatac
cctaaatggcttcatccaccatctttattgaacaggagactgtattagaa
ctggacttaatacaaatgactacactgttatagttttataattggaacta
atgttgctcttttttctaatcagtatttattgactttggcacttaataaa
gtttgcctcctctctaaagatcatttggtgatctttagaaagaggactta
agctactctttagcgtgtgatgaggtaaggctttgtaacactaaaaaaca
aaacaaaacacgaccctcgtaatctgtgtttagtaagtgtagcacagagt
ccagtgtggtgcagtcagtcagtaggcacgatgagtctgctgggtcacgg
tgtccactgtacactgagtaagttagcttttacttcttagttacagtcca
gtgacttaaaattagctaaagcccttcttactggtaagatctcaactgct
ttctttgtatatactcttttattatttaaaaataaagttcttttaaaaat
atacagccttacagtaagaactctttttaaagatttatttatttatgttt
atgggtatttttgcctgcatgtacatttgcacacagaagagggcatcgga
tcccattgcaggtggttatgagccaccatgtggttctgggaattgaactc
aggaccatagagagcagtcagtgctctaacatcgagcatctcttcagtcc
agaaagaactcttaagaataaaatctgtgtaacgttttctttctcaatat
gcaaacgtgggactcgagtgtcaaacgcaaatctgcttaactgttcacgg
tgataagaatcatgacaactaagagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_118353341_118354512
seq2: B6Ng01-094O24.b_50_1206

seq1  GAATTCAAGGGACTGTGGGTCTCTGGTCCTTATAGACATGTAGTATCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGGACTGTGGGTCTCTGGTCCTTATAGACATGTAGTATCCCT  50

seq1  GGGACACTCACTAAGAGCCAAAAGGTCCAAAAGCTAAAAATCTACCATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACACTCACTAAGAGCCAAAAGGTCCAAAAGCTAAAAATCTACCATTT  100

seq1  TATATGTCTGGGAGACTTATCCTCTTGCAAAGCAGCAGCAGAGACCACGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTCTGGGAGACTTATCCTCTTGCAAAGCAGCAGCAGAGACCACGG  150

seq1  AGGAGTGAAAATATTGGAGCTGGGAGGGGAAGCCATTTAAAGGGAAAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGAAAATATTGGAGCTGGGAGGGGAAGCCATTTAAAGGGAAAGCT  200

seq1  CTTCTATGCACAGCTCCCTTAGAACTGCCCATCACTAAATGTCTAGAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATGCACAGCTCCCTTAGAACTGCCCATCACTAAATGTCTAGAAGC  250

seq1  AAAATCTAAATGAAAATTAGTACAGATCACTTGCCAATTTTCTTATCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTAAATGAAAATTAGTACAGATCACTTGCCAATTTTCTTATCAAG  300

seq1  GGGCAACTTATACCTGTACTTTTTTTTCAAAAAGAGCTTATAAACAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAACTTATACCTGTACTTTTTTTTCAAAAAGAGCTTATAAACAAGTT  350

seq1  TAATAAATTAGAAAAATAAGTGAACATAGGCAAAGAGGGCTCTCATTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATTAGAAAAATAAGTGAACATAGGCAAAGAGGGCTCTCATTCTC  400

seq1  ACAAGGGGGACATCTTTCATAGTTCCAACACTAAACTTAACAAACAAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGGGACATCTTTCATAGTTCCAACACTAAACTTAACAAACAAATC  450

seq1  TCATGAAGAACTTTATAAAGTGACATAACGAATGTCAGTCTCATTAACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAGAACTTTATAAAGTGACATAACGAATGTCAGTCTCATTAACAC  500

seq1  TGCCAAAGCATCTGAGCAATCTATGTTGTGAGACCAATTTACAGTCCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAAGCATCTGAGCAATCTATGTTGTGAGACCAATTTACAGTCCTTG  550

seq1  TGACGTGACTGTAAATACCTGCCAAGGCCAACAAAGGCTCAGCAGGTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGTGACTGTAAATACCTGCCAAGGCCAACAAAGGCTCAGCAGGTAAG  600

seq1  GACGCTTAGCGCAGCAGCCTGGGGACCTGAGCTGGATCCTGAAAACCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCTTAGCGCAGCAGCCTGGGGACCTGAGCTGGATCCTGAAAACCAAT  650

seq1  AAAAGGTGGACAGAGAACCAGCTCCACACATTGGTCCTCTGCCTCTACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTGGACAGAGAACCAGCTCCACACATTGGTCCTCTGCCTCTACAC  700

seq1  ATACACTTGGCATCAACGCTCTCCACACCATAAACGTGTACACACACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTTGGCATCAACGCTCTCCACACCATAAACGTGTACACACACACA  750

seq1  CACAGCAAGTAAATAAAAAGCTTAAAATATGTTGTAAAAATGTCTGGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAAGTAAATAAAAAGCTTAAAATATGTTGTAAAAATGTCTGGTAA  800

seq1  ATACATAAAAGCTGAGCCAAAAGTAACACAGGTCAAAGTCTACTCCCAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATAAAAGCTGAGCCAAAAGTAACACAGGTCAAAGTCTACTCCCAAT  850

seq1  TTTTATGTCAACGCCCTCCTTCCCTTCTCAGAAAATACTCTATGAACCTA  900
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTTTATGTCAACGCCCTCCTT-CCTTCTCAGAAAATACTCTATGAACCTA  899

seq1  AAACATTTTGAGCTCTAAACCAGAGTTCTTTACCTGTCCCATAAATCAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTTGAGCTCTAAACCAGAGTTCTTTACCTGTCCCATAAATCAGC  949

seq1  TTTCGAAGATTCGGAGCTGCTTGCTGCTGCCTGAGAAAGGCCTCTGCTGC  1000
      ||||| |||||| ||||||||||||||||||||||||| |||||||||||
seq2  TTTCG-AGATTC-GAGCTGCTTGCTGCTGCCTGAGAAA-GCCTCTGCTGC  996

seq1  TTTTCTGGAAAGGTCTTCC-TTCCACTTCAGAGCACCTGAGAAACCAACA  1049
      |||||| |||||||||||| ||||||||||||||| ||||||||||||||
seq2  TTTTCT-GAAAGGTCTTCCTTTCCACTTCAGAGCA-CTGAGAAACCAACA  1044

seq1  CCCGGTTACATATGCTCACTGGCCCCTGCCTCAAACTCCAAAGTTCACTC  1099
      |||||||||||||||||||||||||||| |||||   |||||||||||||
seq2  CCCGGTTACATATGCTCACTGGCCCCTG-CTCAA--CCCAAAGTTCACTC  1091

seq1  ATTCTAAAGCA-TGTTCATGACATACTTCAGTCGTTAACAAATCCAAAGA  1148
      | |||  |||| |||||||||||||| ||||||||| || ||||||||||
seq2  A-TCT--AGCATTGTTCATGACATAC-TCAGTCGTT-ACCAATCCAAAGA  1136

seq1  GCAGACTCAAAAGTGCAGACACCC  1172
       |  |||| |||||||||| ||||
seq2  -CGAACTC-AAAGTGCAGA-ACCC  1157

seq1: chr6_118483802_118484887
seq2: B6Ng01-094O24.g_70_1145 (reverse)

seq1  GCTCTTAGTTGTCATTGATCTCTATCA-CGTG-ACAGTTTAGCCAGGATT  48
      |||||||||||||| ||||   ||||| |||| |||||| |||   ||||
seq2  GCTCTTAGTTGTCA-TGATTCTTATCACCGTGAACAGTTAAGC--AGATT  47

seq1  TGCGTTTGACACTCGAGTCCCACGTTTTGCATATTGAGAAAGAAAACGTT  98
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGCGTTTGACACTCGAGTCCCACG-TTTGCATATTGAGAAAGAAAACGTT  96

seq1  ACACAGAATTTTATTCTTAGGAGTTCTTTCTGGGACTGAAGAGATGGCTC  148
      |||||| |||||||||||| ||||||||||| ||||||||||||| ||||
seq2  ACACAG-ATTTTATTCTTAAGAGTTCTTTCT-GGACTGAAGAGAT-GCTC  143

seq1  GGTGGTTAAGAGCACTGACTGCTCTTCTATTGGTCCTGAGTTCAATTCCC  198
      | ||  | |||||||||||||||| |||| ||||||||||||||||||||
seq2  GATG--TTAGAGCACTGACTGCTC-TCTA-TGGTCCTGAGTTCAATTCCC  189

seq1  AGAACCCACATGGTGGCTCATAACCACCTGCAATGGGATCCGATGCCCTC  248
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAA-CCACATGGTGGCTCATAACCACCTGCAATGGGATCCGATGCCCTC  238

seq1  TTCTGGTGTGCAAATGTACATGCAGGC-AAAATACCCATAAACATAAATA  297
      |||| |||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTCT-GTGTGCAAATGTACATGCAGGCAAAAATACCCATAAACATAAATA  287

seq1  AATAAATCTTTAAAAAGAGTTCTTACTGTAAGGCTGTATATTTTTAAAAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATCTTTAAAAAGAGTTCTTACTGTAAGGCTGTATATTTTTAAAAG  337

seq1  AACTTTATTTTTAAATAATAAAAGAGTATATACAAAGAAAGCAGTTGAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTATTTTTAAATAATAAAAGAGTATATACAAAGAAAGCAGTTGAGA  387

seq1  TCTTACCAGTAAGAAGGGCTTTAGCTAATTTTAAGTCACTGGACTGTAAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCAGTAAGAAGGGCTTTAGCTAATTTTAAGTCACTGGACTGTAAC  437

seq1  TAAGAAGTAAAAGCTAACTTACTCAGTGTACAGTGGACACCGTGACCCAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGTAAAAGCTAACTTACTCAGTGTACAGTGGACACCGTGACCCAG  487

seq1  CAGACTCATCGTGCCTACTGACTGACTGCACCACACTGGACTCTGTGCTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCATCGTGCCTACTGACTGACTGCACCACACTGGACTCTGTGCTA  537

seq1  CACTTACTAAACACAGATTACGAGGGTCGTGTTTTGTTTTGTTTTTTAGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTACTAAACACAGATTACGAGGGTCGTGTTTTGTTTTGTTTTTTAGT  587

seq1  GTTACAAAGCCTTACCTCATCACACGCTAAAGAGTAGCTTAAGTCCTCTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAAAGCCTTACCTCATCACACGCTAAAGAGTAGCTTAAGTCCTCTT  637

seq1  TCTAAAGATCACCAAATGATCTTTAGAGAGGAGGCAAACTTTATTAAGTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGATCACCAAATGATCTTTAGAGAGGAGGCAAACTTTATTAAGTG  687

seq1  CCAAAGTCAATAAATACTGATTAGAAAAAAGAGCAACATTAGTTCCAATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTCAATAAATACTGATTAGAAAAAAGAGCAACATTAGTTCCAATT  737

seq1  ATAAAACTATAACAGTGTAGTCATTTGTATTAAGTCCAGTTCTAATACAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTATAACAGTGTAGTCATTTGTATTAAGTCCAGTTCTAATACAG  787

seq1  TCTCCTGTTCAATAAAGATGGTGGATGAAGCCATTTAGGGTATTTGCCAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGTTCAATAAAGATGGTGGATGAAGCCATTTAGGGTATTTGCCAG  837

seq1  GTTCTGACGATACATCAAATTAGAACGGTAAAGCGTATCACCTAGTAGCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGACGATACATCAAATTAGAACGGTAAAGCGTATCACCTAGTAGCC  887

seq1  CAGTACCGAGGCCTCACTGCAGAGCTGTGATTCTCTGCCAGGCGATGGAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACCGAGGCCTCACTGCAGAGCTGTGATTCTCTGCCAGGCGATGGAG  937

seq1  GTATTTTATATGCTGGCTCAGCGAATAGTTCAAAGGTTATGTTGTGGGGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTATATGCTGGCTCAGCGAATAGTTCAAAGGTTATGTTGTGGGGT  987

seq1  TACTGAGCTCCCACACTCTGCTACTTCTGCCCCTCGGTGCTGCAGTTACC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGCTCCCACACTCTGCTACTTCTGCCCCTCGGTGCTGCAGTTACC  1037

seq1  AACACACATGTCTACCTTGGGCTTTTTCTATGGGAATTC  1086
      |||||||||||||||||||||||||||||||||||||||
seq2  AACACACATGTCTACCTTGGGCTTTTTCTATGGGAATTC  1076