BAC Information

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BAC

Clone NameB6Ng01-095G23
Chromosome6 (Build37)
Map Location 83,667,649 - 83,785,637
singlet/doubletdoublet
Overlap geneVax2, Atp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk, Paip2b
Upstream geneLOC100043412, Hk2, EG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2, Stambp, LOC664956, Clec4f, Cd207, Vax2os2, Vax2os1
Downstream geneLOC384450, LOC622683, LOC380687, LOC665098, LOC676366, Zfml, Dysf, LOC665114, 4930504D19Rik, Cyp26b1, Exoc6b, LOC665129
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095G23.bB6Ng01-095G23.g
ACCDH906377DH906378
length1,130966
definitionDH906377|Mus musculus domesticus DNA, BAC clone: B6Ng01-095G23, 5' end.DH906378|Mus musculus domesticus DNA, BAC clone: B6Ng01-095G23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,667,649 - 83,668,754)(83,784,655 - 83,785,637)
sequence
gaattcaccagaacttccttcacaggtacccgtttgtttgttttattata
cattttttcttttgctggcgcgcgcgcgcgcgcgcacacacacacacaca
cacacacacacacacacacacgcagaggacaattgtcaagagcttgttcc
tgcctatagtctgagtcctggggagggaactcaggttgtatctccccaga
tctctgcctagaacctgctgagccttctcaccaccccagtccccacctcc
tttttaaactctatggtaagatggcagccattttcattgccttgtaatcc
actcttttagatcatttgcatggttttacacatctatacagctatgtgtt
tactttcctcccactgcgttttatatataaagaatccttgcctgtattta
acaaatgtacggtttttctttgtatggatatgtcacatagctagtgtgct
attaagacattgggctattgctattgcatatactatgcagtaaataaact
tggctgttttgtttgttatgtttagctccacttggtgggtaaattctttg
agggagttcctcaaagtgggttactgggtcaaagggtgtctatgtttata
acttgaaagttaattccaaactgctcttgggtggtgacaatttactttcc
taccaagaatgaggggacagtcacttttttcacatcctcctctgcacccc
agatgctggccaaacccctaggttttcctagccctttcttatgacttgtt
ttattttgctaaagtttgttgatttagggtgaattggttcttgctaaaat
attttacaatttttattcttcagtgtgtgtgaagtgtatgtgtgtgcatg
cgtgtgcaacaggtgcatgtaatatgaggccaaaaaaagttattgggacc
ctctgggagctggagctacagactacagacagttgtcaaactgggaacca
ccctttagtcctttgcaagaacaagtatgcttcttttttacaagaagagt
aattatactcctaactggtaaagtcatctcctccagcctcttggttgggt
ttttaccatggttggtttgtttactactatattgcagtggtggaagtgga
gtaaacgtttggaaggtcagaatctctctg
gaattcctagtgagattccagaattcataatttgacagaatccagaggcc
ttgtaccagaccaacaattcattgcaatgaacatttgcaagcaaagaagt
gtggccaaaagaaacttaagcagaaactatagaagaataaagtactgctt
actatttcacttacaggctcacgctcagctagctgttttacacggcacag
aactacttgcttagggaatggtgctgcccacagttggctgggacttccta
tatcaattaacgattaattactcccccccccagatatgctcaaaaatctg
tttgtttttggcaatccctcaattctcaggtgattttaggctatcaagtt
gacagttaaagctaactaggacaggacctgagtgtgcatggattttggta
tctacaggtagggggtctcagagccattaaatgaaggtttaaacttgagt
aggcaatcttcagtggaatgcaaacctacctaaccacacagctttggaac
taatgaggccacataggagagattctggagatgtgcaggttagtggcgct
ttcccagtcattacttcttcacttaatttgtgcctctctgttcaacgttg
tctttagagggttctttttttttttttttttttgttttgttttgtttttt
ttcgagacaggggtttctctgtggtagctctggctgtcctggaactcact
ctgtagaaccaggctggcctcgaactcagaaatccacctgcctctgcctc
ccaagtgctgggattaaaggcgtgtgccaccacgccccggctgagaggtt
ctaaaataccatccacttaaaatagccatttcctggccatcaaaactttc
tttttctttttggtagcactcgtgacacttgaatctcttgggttattctg
gctaccagcaagctctggcaacaattcatgcattcattgttggctgcact
atagctagagcctgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_83667649_83668754
seq2: B6Ng01-095G23.b_50_1179

seq1  GAATTCACCAGAACTTCCTTCACAGGTACCCGTTTGTTTGTTTTATTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAGAACTTCCTTCACAGGTACCCGTTTGTTTGTTTTATTATA  50

seq1  CATTTTTTCTTTTGCTGGCGCGCGCGCGCGCGCGCACACACACACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTCTTTTGCTGGCGCGCGCGCGCGCGCGCACACACACACACACA  100

seq1  CACACACACACACACACACACGCAGAGGACAATTGTCAAGAGCTTGTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACGCAGAGGACAATTGTCAAGAGCTTGTTCC  150

seq1  TGCCTATAGTCTGAGTCCTGGGGAGGGAACTCAGGTTGTATCTCCCCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTATAGTCTGAGTCCTGGGGAGGGAACTCAGGTTGTATCTCCCCAGA  200

seq1  TCTCTGCCTAGAACCTGCTGAGCCTTCTCACCACCCCAGTCCCCACCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCTAGAACCTGCTGAGCCTTCTCACCACCCCAGTCCCCACCTCC  250

seq1  TTTTTAAACTCTATGGTAAGATGGCAGCCATTTTCATTGCCTTGTAATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAACTCTATGGTAAGATGGCAGCCATTTTCATTGCCTTGTAATCC  300

seq1  ACTCTTTTAGATCATTTGCATGGTTTTACACATCTATACAGCTATGTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTTAGATCATTTGCATGGTTTTACACATCTATACAGCTATGTGTT  350

seq1  TACTTTCCTCCCACTGCGTTTTATATATAAAGAATCCTTGCCTGTATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCCTCCCACTGCGTTTTATATATAAAGAATCCTTGCCTGTATTTA  400

seq1  ACAAATGTACGGTTTTTCTTTGTATGGATATGTCACATAGCTAGTGTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGTACGGTTTTTCTTTGTATGGATATGTCACATAGCTAGTGTGCT  450

seq1  ATTAAGACATTGGGCTATTGCTATTGCATATACTATGCAGTAAATAAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGACATTGGGCTATTGCTATTGCATATACTATGCAGTAAATAAACT  500

seq1  TGGCTGTTTTGTTTGTTATGTTTAGCTCCACTTGGTGGGTAAATTCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTTTTGTTTGTTATGTTTAGCTCCACTTGGTGGGTAAATTCTTTG  550

seq1  AGGGAGTTCCTCAAAGTGGGTTACTGGGTCAAAGGGTGTCTATGTTTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTTCCTCAAAGTGGGTTACTGGGTCAAAGGGTGTCTATGTTTATA  600

seq1  ACTTGAAAGTTAATTCCAAACTGCTCTT-GGTGGTGACAATTTACTTTCC  649
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACTTGAAAGTTAATTCCAAACTGCTCTTGGGTGGTGACAATTTACTTTCC  650

seq1  TACCAAGAATGAGGGGACAGTCACTTTTTCCACATCCTCCTCTGCACCCC  699
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TACCAAGAATGAGGGGACAGTCACTTTTTTCACATCCTCCTCTGCACCCC  700

seq1  AGATGCTGGCCAAACCCCTAGGTTTTCCTAGCCCTTTCTTATGACTTGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGGCCAAACCCCTAGGTTTTCCTAGCCCTTTCTTATGACTTGTT  750

seq1  TTATTTTGCT-AAGTTTGTTGATTTAGGGTGAATT-GTTCTTGCT-AAAT  796
      |||||||||| |||||||||||||||||||||||| ||||||||| ||||
seq2  TTATTTTGCTAAAGTTTGTTGATTTAGGGTGAATTGGTTCTTGCTAAAAT  800

seq1  ATTTTACAA-TTTTATTCTTCAGTGTGTGTG-AGTGTATGTGTGTGCATG  844
      ||||||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  ATTTTACAATTTTTATTCTTCAGTGTGTGTGAAGTGTATGTGTGTGCATG  850

seq1  CGTGTGC-ACATGTGCATGT-ATATGAGGCCAAAAGAGGTTATT-GGACC  891
      ||||||| ||| |||||||| |||||||||||||| | |||||| |||||
seq2  CGTGTGCAACAGGTGCATGTAATATGAGGCCAAAAAAAGTTATTGGGACC  900

seq1  CCCT-GGAGCTGGAGCTACAGACTACAGACAGTTGTC-AACTGGGAACCA  939
      | || |||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTCTGGGAGCTGGAGCTACAGACTACAGACAGTTGTCAAACTGGGAACCA  950

seq1  CCCTTTAGTCCTTTGCAAGAAC-AGTATGCT--CTTTTTACAAG-AGAGT  985
      |||||||||||||||||||||| ||||||||   |||||||||| |||||
seq2  CCCTTTAGTCCTTTGCAAGAACAAGTATGCTTCTTTTTTACAAGAAGAGT  1000

seq1  AA-TATACTCCTAACT-GTTAAGTCATCT-CTCCAGCCTC-TGGTTTGGT  1031
      || ||||||||||||| || ||||||||| |||||||||| ||||| |||
seq2  AATTATACTCCTAACTGGTAAAGTCATCTCCTCCAGCCTCTTGGTTGGGT  1050

seq1  TTTTA-CAT-GTTTGTTTGTTTACTTACT-TATTGCATGTGTGAATGT-G  1077
      ||||| ||| ||| |||||||||| |||| |||||||   ||| | || |
seq2  TTTTACCATGGTTGGTTTGTTTAC-TACTATATTGCAGTGGTGGAAGTGG  1099

seq1  AGTAAACGTTTGG-AGGTCAG-ATCTCTCTG  1106
      ||||||||||||| ||||||| |||||||||
seq2  AGTAAACGTTTGGAAGGTCAGAATCTCTCTG  1130

seq1: chr6_83784655_83785637
seq2: B6Ng01-095G23.g_66_1031 (reverse)

seq1  TTCAGGCTCTATGCAAATAGTGCAGCCAAACAAATGAAAATTGCATGAAT  50
      ||||||||||| ||  |||||||||||||   ||||||   |||||||||
seq2  TTCAGGCTCTA-GC-TATAGTGCAGCCAA--CAATGAA---TGCATGAAT  43

seq1  TGTTTGCAAGAGCTCTGACTGGTAGCAAAGAAATAACCCAAGAGTATTCA  100
      || |||| |||||| || |||||||| |   ||||||||||||| |||||
seq2  TG-TTGCCAGAGCT-TG-CTGGTAGCCA--GAATAACCCAAGAG-ATTCA  87

seq1  AGTGTCACGAGTGCTAACAAAAAAAGAAAAAAAGAAAGTTATTGAATGGC  150
      |||||||||||||||| |||||    | |||||||||||| ||| |||||
seq2  AGTGTCACGAGTGCTACCAAAA----AGAAAAAGAAAGTT-TTG-ATGGC  131

seq1  CAGGAAATGGCTATTTTAAGTGGAATGGTTAATTTAAGAACC-CTCAGCC  199
      ||||||||||||||||||||||| |||||  |||| |||||| |||||||
seq2  CAGGAAATGGCTATTTTAAGTGG-ATGGT--ATTTTAGAACCTCTCAGCC  178

seq1  -GGGCGTGGTGGCACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCA  248
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGTGGTGGCACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCA  228

seq1  GGTGGATTTCTGAGTTCGAGGCCAGCCTGG-TCTACAGAGTGAGTTCCAG  297
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGTGGATTTCTGAGTTCGAGGCCAGCCTGGTTCTACAGAGTGAGTTCCAG  278

seq1  GACAGCCAGAGCTA-CACAGAGAAA-CCCTGTCTCG-AAAAAAACAAAAC  344
      |||||||||||||| |||||||||| |||||||||| |||||||||||||
seq2  GACAGCCAGAGCTACCACAGAGAAACCCCTGTCTCGAAAAAAAACAAAAC  328

seq1  AAAACAAAAAAAAAAAAAAAAAAAAGAACCCTCTAAAGACAACGTTGAAC  394
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAC-AAAAAAAAAAAAAAAAAAAGAACCCTCTAAAGACAACGTTGAAC  377

seq1  AGAGAGGCACAAATTAAGTGAAGAAGTAATGACTGGGAAAGCGCCACTAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGCACAAATTAAGTGAAGAAGTAATGACTGGGAAAGCGCCACTAA  427

seq1  CCTGCACATCTCCAGAATCTCTCCTATGTGGCCTCATTAGTTCCAAAGCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCACATCTCCAGAATCTCTCCTATGTGGCCTCATTAGTTCCAAAGCT  477

seq1  GTGTGGTTAGGTAGGTTTGCATTCCACTGAAGATTGCCTACTCAAGTTTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTTAGGTAGGTTTGCATTCCACTGAAGATTGCCTACTCAAGTTTA  527

seq1  AACCTTCATTTAATGGCTCTGAGACCCCCTACCTGTAGATACCAAAATCC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTCATTTAATGGCTCTGAGACCCCCTACCTGTAGATACCAAAATCC  577

seq1  ATGCACACTCAGGTCCTGTCCTAGTTAGCTTTAACTGTCAACTTGATAGC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACACTCAGGTCCTGTCCTAGTTAGCTTTAACTGTCAACTTGATAGC  627

seq1  CTAAAATCACCTGAGAATTGAGGGATTGCCAAAAACAAACAGATTTTTGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATCACCTGAGAATTGAGGGATTGCCAAAAACAAACAGATTTTTGA  677

seq1  GCATATCTGGGGGGGGGAGTAATTAATCGTTAATTGATATAGGAAGTCCC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATCTGGGGGGGGGAGTAATTAATCGTTAATTGATATAGGAAGTCCC  727

seq1  AGCCAACTGTGGGCAGCACCATTCCCTAAGCAAGTAGTTCTGTGCCGTGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAACTGTGGGCAGCACCATTCCCTAAGCAAGTAGTTCTGTGCCGTGT  777

seq1  AAAACAGCTAGCTGAGCGTGAGCCTGTAAGTGAAATAGTAAGCAGTACTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGCTAGCTGAGCGTGAGCCTGTAAGTGAAATAGTAAGCAGTACTT  827

seq1  TATTCTTCTATAGTTTCTGCTTAAGTTTCTTTTGGCCACACTTCTTTGCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTCTATAGTTTCTGCTTAAGTTTCTTTTGGCCACACTTCTTTGCT  877

seq1  TGCAAATGTTCATTGCAATGAATTGTTGGTCTGGTACAAGGCCTCTGGAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATGTTCATTGCAATGAATTGTTGGTCTGGTACAAGGCCTCTGGAT  927

seq1  TCTGTCAAATTATGAATTCTGGAATCTCACTAGGAATTC  983
      |||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAAATTATGAATTCTGGAATCTCACTAGGAATTC  966