BAC Information

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BAC

Clone NameB6Ng01-096A06
Chromosome6 (Build37)
Map Location 134,905,416 - 135,035,821
singlet/doubletdoublet
Overlap geneApold1, Ddx47, Gprc5a
Upstream geneEtv6, LOC100043660, Bcl2l14, Lrp6, Mansc1, Loh12cr1, LOC100043884, Dusp16, Crebl2, Gpr19, Cdkn1b, 1190002F15Rik
Downstream geneGprc5d, LOC100043668, Hebp1, 8430419L09Rik, Gsg1, Pbp2, LOC100043890, Emp1, Grin2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096A06.bB6Ng01-096A06.g
ACCDH906797DH906798
length1,1561,082
definitionDH906797|Mus musculus domesticus DNA, BAC clone: B6Ng01-096A06, 5' end.DH906798|Mus musculus domesticus DNA, BAC clone: B6Ng01-096A06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,035,156 - 135,035,821)(134,905,416 - 134,906,507)
sequence
gaattctgggctctctcaatccatgggatgtgatattgtctccaggtaga
tggtgtaagatttgagttaaatcacaggtcacttcccgggcttccactgt
gatactgctggcttgatggtgcagaggaagatccacaccttttgaattca
gagctccattgtgttgatttttgtgttgtgagattaaaacatgaatatac
atttagtgaggagtcatggcacagggtccttacactgtagcctaagctgg
gtcttaaaatcatggtagtctccctacctcagcctccagagcattagaaa
agtgagagccaccatgcctggctaggaacatcatgtgtttaaatacttgg
ccatagggagtggcactattaggaggtgtggccctgttgcagtaagcaag
gccttggaggaagtgttttgctgtgggggtaggctttgaagtcacctatg
ctcaagctacagccagtgtggcagaccatctcctgctgcctccggatgga
gatgtaaaactctcagcttgttctccagcaccatgtctgcctgcacactg
ccatgtttctctgccatgataataattgattgaatctgggctggtgagat
ggctcagtgggtaagagcacccggttgctcttccgaaggtccagagttca
aatcccagcaaccacatggtggctcacaaccatccccaacaagatctgac
tccctcttctggagtgtctgaagacagctacagtgtacttacatatatta
ataaaataaatctttaaaaaaaaaataattgattgaatctctgaaaccat
aagccagccccaattacatgtctgcctttgtcagagttgccttggtgaca
gcattcttcattcttcacagcaatgaagccccaactaagactatatatat
aatttttttttcctcacagaaaccccactgggttcttgagaaagactagg
cgagtctagaggacttacctcaggattctgctctcgctccactatgcaga
tccggagattgaattcaaggttctcaccactctttcatctgtctcatcag
taaaaaaaaaaaaaaaacaccaggcaaaggaaagtgcagctgcagccttt
aggagctaatcaaccgactgggatacccacacttcttcacagcctaaact
cgcttt
gaattctctgtgcagaacactacagaacacacctttgtctgtgcctccgt
ctcttctgaagcacacagaataacatcactttatttggcaggggtggagg
tgggcagcaagctactgtaaaccaggtttgggaaatctcttctcaaagga
caggacatgttgcggtaagagaagtatgctagctcatagaagcttgggtg
tgaaaagttctttgtattttctaaggtttttagagcagagctggcgatta
tgagattttaatgtagaactgaagccctagggctaagagaaaggagaatg
cactggaagaaaggaaagtgcaaccaagaaccaaggtgtgggcttctcaa
acattgccttcttccagggcagagaaggcccagatcagggccatgtatct
gcagaggcccataggcaagcctgtggtgtattttctcgattgatgtggaa
gggcccagcatgtggtagtggttctgagttctatgagaaagcaggtttca
ggagaagataaaaaacaaaaaaaaaaaaaaaaaaacaaacaaaaaaaaaa
aacgcacacaggtaaacattccctgtctagggaactgatagaaaatgttg
tcagttatttgtctgtatttttttagttgaaattttatcttatttatgtg
tatgtatctctgggtgtctgccacttgtatttggatggtcacgtagatca
gagaaggcatcagagcccctgaagctggagttctaggcaattctgagcag
cccagtgtcattgctgaaaactgaacttggcccctctagaagagcagcct
gtgctcttaactgctgggctatctctccagtccccatttgtgtatatttt
gatattacttatttattaatttatttttgtttgtttgtctcaggcagggt
ttctctatgcagccctggctatcctggaactcgctctgtaagcagctggc
ctctgactcaggagctgtacttgcttctgcttccaagtgcttgggactaa
aggtgtgcaccccacccccacccgctgattttattatttattttgtaagt
tctaatgttttatatattggattgaatgggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_135035156_135035821
seq2: B6Ng01-096A06.b_551_1202 (reverse)

seq1  AAAGCGAGTTAGGGCTGTGAAGAAGTGTGGGTATTCACAGCTCGGGTATT  50
      ||||||||||  ||||||||||||||||||||| || ||| ||||   ||
seq2  AAAGCGAGTTTAGGCTGTGAAGAAGTGTGGGTA-TCCCAG-TCGG---TT  45

seq1  GA-TAGCTCATAAAGGCTGGCAGGCTGCACTTTCATTTGCCTGGTTGTTT  99
      || |||||| |||||||| ||| ||||||||||| ||||||||   || |
seq2  GATTAGCTCCTAAAGGCT-GCA-GCTGCACTTTCCTTTGCCTG---GTGT  90

seq1  TTTTTTTTTTTTTTTACTGATTGAAGACAGAATGACAGAGTTGGTGAGAA  149
      |||||||||||||||||||||   |||||| |||| |||| |||||||||
seq2  TTTTTTTTTTTTTTTACTGAT--GAGACAG-ATGAAAGAG-TGGTGAGAA  136

seq1  CC-TGAATTCAATCTCCGGATCTGCATAGTGGAGCGAGAGCAGATTCCTG  198
      || ||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCTTGAATTCAATCTCCGGATCTGCATAGTGGAGCGAGAGCAGAATCCTG  186

seq1  AGGTAAGTCCTTCTAGACTCGCCTAGTCTTTCTCAAGAACCCAGTGGGGT  248
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGTCC-TCTAGACTCGCCTAGTCTTTCTCAAGAACCCAGTGGGGT  235

seq1  TTCTTGTGAGGAAAAAAAAATTATATATATAGTCTTAGTTGGGGCTTCAT  298
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTC-TGTGAGGAAAAAAAAATTATATATATAGTCTTAGTTGGGGCTTCAT  284

seq1  TGCTGTGAAGAATGAAGAATGCTGTCACCAAGGCAACTCTGACAAAGGCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGAAGAATGAAGAATGCTGTCACCAAGGCAACTCTGACAAAGGCA  334

seq1  GACATGTAATTGGGGCTGGCTTATGGTTTCAGAGATTCAATCAATTATTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGTAATTGGGGCTGGCTTATGGTTTCAGAGATTCAATCAATTATTT  384

seq1  TTTTTTTAAAGATTTATTTTATTAATATATGTAAGTACACTGTAGCTGTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAAAGATTTATTTTATTAATATATGTAAGTACACTGTAGCTGTC  434

seq1  TTCAGACACTCCAGAAGAGGGAGTCAGATCTTGTTGGGGATGGTTGTGAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACACTCCAGAAGAGGGAGTCAGATCTTGTTGGGGATGGTTGTGAG  484

seq1  CCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAACC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAACC  534

seq1  GGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCAGATTCAATCAATTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCAGATTCAATCAATTA  584

seq1  TTATCATGGCAGAGAAACATGGCAGTGTGCAGGCAGACATGGTGCTGGAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATGGCAGAGAAACATGGCAGTGTGCAGGCAGACATGGTGCTGGAG  634

seq1  AACAAGCTGAGAGTTTTA  666
      ||||||||||||||||||
seq2  AACAAGCTGAGAGTTTTA  652

seq1: chr6_134905416_134906507
seq2: B6Ng01-096A06.g_68_1149

seq1  GAATTCTCTGTGCAGAACACTACAGAACACACCTTTGTCTGTGCCTCCGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTGCAGAACACTACAGAACACACCTTTGTCTGTGCCTCCGT  50

seq1  CTCTTCTGAAGCACACAGAATAACATCACTTTATTTGGCAGGGGTGGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGAAGCACACAGAATAACATCACTTTATTTGGCAGGGGTGGAGG  100

seq1  TGGGCAGCAAGCTACTGTAAACCAGGTTTGGGAAATCTCTTCTCAAAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGCAAGCTACTGTAAACCAGGTTTGGGAAATCTCTTCTCAAAGGA  150

seq1  CAGGACATGTTGCGGTAAGAGAAGTATGCTAGCTCATAGAAGCTTGGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACATGTTGCGGTAAGAGAAGTATGCTAGCTCATAGAAGCTTGGGTG  200

seq1  TGAAAAGTTCTTTGTATTTTCTAAGGTTTTTAGAGCAGAGCTGGCGATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGTTCTTTGTATTTTCTAAGGTTTTTAGAGCAGAGCTGGCGATTA  250

seq1  TGAGATTTTAATGTAGAACTGAAGCCCTAGGGCTAAGAGAAAGGAGAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTTTAATGTAGAACTGAAGCCCTAGGGCTAAGAGAAAGGAGAATG  300

seq1  CACTGGAAGAAAGGAAAGTGCAACCAAGAACCAAGGTGTGGGCTTCTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGAAGAAAGGAAAGTGCAACCAAGAACCAAGGTGTGGGCTTCTCAA  350

seq1  ACATTGCCTTCTTCCAGGGCAGAGAAGGCCCAGATCAGGGCCATGTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCCTTCTTCCAGGGCAGAGAAGGCCCAGATCAGGGCCATGTATCT  400

seq1  GCAGAGGCCCATAGGCAAGCCTGTGGTGTATTTTCTCGATTGATGTGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCCCATAGGCAAGCCTGTGGTGTATTTTCTCGATTGATGTGGAA  450

seq1  GGGCCCAGCATGTGGTAGTGGTTCTGAGTTCTATGAGAAAGCAGGTTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCAGCATGTGGTAGTGGTTCTGAGTTCTATGAGAAAGCAGGTTTCA  500

seq1  GGAGAAGATAAAAAACAAAAAAAAAAAAAAAAAAACAAACAAAAAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGATAAAAAACAAAAAAAAAAAAAAAAAAACAAACAAAAAAAAAA  550

seq1  AACGCACACAGGTAAACATTCCCTGTCTAGGGAACTGATAGAAAATGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCACACAGGTAAACATTCCCTGTCTAGGGAACTGATAGAAAATGTTG  600

seq1  TCAGTTATTTGTCTGTATTTTTTTAGTTGAAATTTTATCTTATTTATGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTATTTGTCTGTATTTTTTTAGTTGAAATTTTATCTTATTTATGTG  650

seq1  TATGTATCTCTGGGTGTCTGCCACTTGTATTTGGATGGTCACGTAGATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATCTCTGGGTGTCTGCCACTTGTATTTGGATGGTCACGTAGATCA  700

seq1  GAGAAGGCATCAGAGCCCCTGAAGCTGGAGTTCTAGGCAATTCTGAGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGCATCAGAGCCCCTGAAGCTGGAGTTCTAGGCAATTCTGAGCAG  750

seq1  CCCAGTGTCATTGCTGAAAACTGAACTTGGCCCCTCTAGAAGAGCAGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGTCATTGCTGAAAACTGAACTTGGCCCCTCTAGAAGAGCAGCCT  800

seq1  GTGCTCTTAACTGCTGGGCTATCTCTCCAGTCCCCATTTGTGTATATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTTAACTGCTGGGCTATCTCTCCAGTCCCCATTTGTGTATATTTT  850

seq1  GATATTACTTATTTATTAATTTATTTTTGTTTGTTTGTCTTCAAGGCAGG  900
      ||||||||||||||||||||||||||||||||||||||||   |||||||
seq2  GATATTACTTATTTATTAATTTATTTTTGTTTGTTTGTCT--CAGGCAGG  898

seq1  GTTTCTCTATGCAGCCCTGGCTATCCTGGAACTCGCTCTGTAAAGCAGGC  950
      ||||||||||||||||||||||||||||||||||||||||| ||||| ||
seq2  GTTTCTCTATGCAGCCCTGGCTATCCTGGAACTCGCTCTGT-AAGCA-GC  946

seq1  TGGCCTCTGACTCAAGAGCTGTACTTGCCTCTGCTTCCCAAGTGC-TGGG  999
      |||||||||||||| ||||||||||||| ||||||| |||||||| ||||
seq2  TGGCCTCTGACTCAGGAGCTGTACTTGCTTCTGCTT-CCAAGTGCTTGGG  995

seq1  ACTAAAGGTGTGCACCCCACCCCCCACCCCGGCTGATTTTATTTATTTAT  1049
      ||||||||||||||||||| |||||||||  |||||||||| ||||||||
seq2  ACTAAAGGTGTGCACCCCA-CCCCCACCC--GCTGATTTTA-TTATTTAT  1041

seq1  TTTGTAAGTATCTATTGTTTTTATTATTGTATGTGAATGGGTG  1092
      ||||||||| |||| ||||||   ||||| || ||||||||||
seq2  TTTGTAAGT-TCTAATGTTTTATATATTGGAT-TGAATGGGTG  1082