BAC Information

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BAC

Clone NameB6Ng01-096A21
Chromosome6 (Build37)
Map Location 11,463,393 - 11,566,587
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040285, LOC667650, AA545190
Downstream geneNdufa4, Phf14, LOC100040844, EG625347, LOC435879, Thsd7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096A21.bB6Ng01-096A21.g
ACCDH906821DH906822
length1,109858
definitionDH906821|Mus musculus domesticus DNA, BAC clone: B6Ng01-096A21, 5' end.DH906822|Mus musculus domesticus DNA, BAC clone: B6Ng01-096A21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,463,393 - 11,464,494)(11,565,746 - 11,566,587)
sequence
gaattcttattggcatgcaataggaattgttaaattttctataataaaaa
cattgtcttcatagctatcagacgcatggccctgattcaatgcacaaatt
accatggagtgttcatattatgaggtttaattcctatctgagaacaatta
tggaaaattcttagattcatggccagtgagaaaatgtagaaaatacttca
ggaataagcaatccctcttccatagtctaaaattatatgatttatgaaaa
agatgttaggttacctgctatgaagcttgataaatagtaaatccataatg
tttatagtttctttgatttcttatcactaataaagtcttactgaagaaag
ttaattacttgaactacgttgggatatcataaaggtaatattgacattat
gttagttaatatttcattatatttgaataaccatcctatattgattgatt
agaaaacctctcattttttcagtttctacaaaaatcccctataaatactt
tattaggaaaatctgaaaacatatagaaaatctattttctaactgtgctg
aaattattttatcttaattaaccatctttatcggattatgattttactta
gactccattgtaaacacagtgttcctgaggttcactggtgtgtgtgtttg
agtgtgtgtgtttatttacatggaagattcaactctcccctccagggtac
atattaatccacactaactgatacactcaatcaaattaaaataccactta
aatgaactactttactactcattgctttttatacaacttaccataggagt
tccaagatcaaactcgggtcatcagtcttggcagcaagtgtatttacaca
cagagccatgtctccagttcaaatatccttaataaccaaataagcaatgt
caaaaatcaaagtttatctatttaaaaggctattgcaagtactttgactg
cctaaccatcatcttcccattttttttaccttccatgctagtagaacttt
aaacttgtttttttcatgttacaaagaggttaacagatccaggcacctac
cttggcagaagaagggggtgtcttgcttggccttgggagggcttttgtcc
gaagcatct
gaattctgtaatagctagaaaagctgaaaggaaaaacagaatgtctaggt
agagaaatttatataggaaattcctataattgttgcatataaaaggtatt
gtcatttaccttattaatccccaaataaataatgccgttttctaccttca
gagcttccatttctctatcaggtatttcaatcattcctacccaaaggcat
caaaataggaggctgaggatatggaagaatatttactgtagtatggcgcc
catatttcttacttcattgtagttcttcattcaccgtttcttaaacggac
aatgggcacagtgtgctaccttacacagtgcctggtgaaacatttgtttt
ctggttatgatcaagaaagagggggctatgcctcaaaaaacactttctag
gaggggaaagttagctgtcaatcatcccatatcatttttactgacaacag
agacgctagatagactcacttcagccccatgcttttcacagtaagcgcat
ctcctggctgtgactctgtatatctgttttgttattgttgttttgttttg
tttgttttggggggggtgccttttagcatccctaggcaggccacttttac
tttgggagtcttaatttattcattcataaaacaaagacaataatggggac
ttacctttttgactagctgaaaaggactgtgctgagtgctcaaaacaggt
taatgatacacagtaaagtgctcaaagaactgttttctgtttcttctcca
cctcaacaaaatctaattcagtgggttctatcagccatcttcatttaata
ggctgttaaagttttaaggtgacttgctcattttataagttaggtgataa
aacacatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_11463393_11464494
seq2: B6Ng01-096A21.b_48_1156

seq1  GAATTCTTATTGGCATGCAATAGGAATTGTTAAATTTTCTATAATAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTGGCATGCAATAGGAATTGTTAAATTTTCTATAATAAAAA  50

seq1  CATTGTCTTCATAGCTATCAGACGCATGGCCCTGATTCAATGCACAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCTTCATAGCTATCAGACGCATGGCCCTGATTCAATGCACAAATT  100

seq1  ACCATGGAGTGTTCATATTATGAGGTTTAATTCCTATCTGAGAACAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGAGTGTTCATATTATGAGGTTTAATTCCTATCTGAGAACAATTA  150

seq1  TGGAAAATTCTTAGATTCATGGCCAGTGAGAAAATGTAGAAAATACTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAATTCTTAGATTCATGGCCAGTGAGAAAATGTAGAAAATACTTCA  200

seq1  GGAATAAGCAATCCCTCTTCCATAGTCTAAAATTATATGATTTATGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAAGCAATCCCTCTTCCATAGTCTAAAATTATATGATTTATGAAAA  250

seq1  AGATGTTAGGTTACCTGCTATGAAGCTTGATAAATAGTAAATCCATAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTAGGTTACCTGCTATGAAGCTTGATAAATAGTAAATCCATAATG  300

seq1  TTTATAGTTTCTTTGATTTCTTATCACTAATAAAGTCTTACTGAAGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGTTTCTTTGATTTCTTATCACTAATAAAGTCTTACTGAAGAAAG  350

seq1  TTAATTACTTGAACTACGTTGGGATATCATAAAGGTAATATTGACATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTACTTGAACTACGTTGGGATATCATAAAGGTAATATTGACATTAT  400

seq1  GTTAGTTAATATTTCATTATATTTGAATAACCATCCTATATTGATTGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTAATATTTCATTATATTTGAATAACCATCCTATATTGATTGATT  450

seq1  AGAAAACCTCTCATTTTTTCAGTTTCTACAAAAATCCCCTATAAATACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACCTCTCATTTTTTCAGTTTCTACAAAAATCCCCTATAAATACTT  500

seq1  TATTAGGAAAATCTGAAAACATATAGAAAATCTATTTTCTAACTGTGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGGAAAATCTGAAAACATATAGAAAATCTATTTTCTAACTGTGCTG  550

seq1  AAATTATTTTATCTTAATTAACCATCTTTATCGGATTATGATTTTACTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTTTATCTTAATTAACCATCTTTATCGGATTATGATTTTACTTA  600

seq1  GACTCCATTGTAAACACAGTGTTCCTGAGGTTCACTGGTGTGTGTGTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCATTGTAAACACAGTGTTCCTGAGGTTCACTGGTGTGTGTGTTTG  650

seq1  AGTGTGTGTGTTTATTTACATGGAAGATTCAACTCTCCCCTCCAGGGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTGTGTTTATTTACATGGAAGATTCAACTCTCCCCTCCAGGGTAC  700

seq1  ATATTAATCCACACTAACTGATACACTCAATCAAATTAAAATACCACTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAATCCACACTAACTGATACACTCAATCAAATTAAAATACCACTTA  750

seq1  AATGAACTACTTTACTACTCATTGCTTTTTATACAACTTACCATAGGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACTACTTTACTACTCATTGCTTTTTATACAACTTACCATAGGAGT  800

seq1  TCCAAGATCAAACTCGGGTCATCAGTCTTGGCAGCAAGTGTATTTACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGATCAAACTCGGGTCATCAGTCTTGGCAGCAAGTGTATTTACACA  850

seq1  CAGAGCCATGTCTCCAGTTCAAATATCCTTAATAACCAAATAAGCAATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCATGTCTCCAGTTCAAATATCCTTAATAACCAAATAAGCAATGT  900

seq1  CAAAAATCAAAGTTTATCTATTTAAAAGGCTATTGCAAGTACTTTGACTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATCAAAGTTTATCTATTTAAAAGGCTATTGCAAGTACTTTGACTG  950

seq1  CCTAACCATCATCTTCCCATTTTTTTTACCTTCCATGCTAGTAGAACTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACCATCATCTTCCCATTTTTTTTACCTTCCATGCTAGTAGAACTTT  1000

seq1  AAACTTG-TTTATTCATGTTACAAAGAGG-TAACAGGATCCAGGCACCTA  1048
      ||||||| ||| ||||||||||||||||| ||||| ||||||||||||||
seq2  AAACTTGTTTTTTTCATGTTACAAAGAGGTTAACA-GATCCAGGCACCTA  1049

seq1  CCCTGGCAGAGGA--GGGGTGTC-TGCCTGGCC-TGGGAGGGCTTT--GC  1092
      || ||||||| ||  |||||||| ||| ||||| ||||||||||||   |
seq2  CCTTGGCAGAAGAAGGGGGTGTCTTGCTTGGCCTTGGGAGGGCTTTTGTC  1099

seq1  CAGAGCATCT  1102
      |  |||||||
seq2  CGAAGCATCT  1109

seq1: chr6_11565746_11566587
seq2: B6Ng01-096A21.g_64_921 (reverse)

seq1  AATGTG-TTTATCACCT-ACTTAT-AAATGAGCAAGTCA-CTTAAAAC-T  45
      |||||| |||||||||| |||||| |||||||||||||| |||||||| |
seq2  AATGTGTTTTATCACCTAACTTATAAAATGAGCAAGTCACCTTAAAACTT  50

seq1  TAACAGCCTATTAAATGAAGATGGCTGATAGAA-CCACTG-ATTAGA-TT  92
      ||||||||||||||||||||||||||||||||| |||||| |||||| ||
seq2  TAACAGCCTATTAAATGAAGATGGCTGATAGAACCCACTGAATTAGATTT  100

seq1  TGTTGAGGTGGAGAAG-AACAGAAAACAGTTC-TTGAGCAC-TTACTGTG  139
      |||||||||||||||| ||||||||||||||| |||||||| ||||||||
seq2  TGTTGAGGTGGAGAAGAAACAGAAAACAGTTCTTTGAGCACTTTACTGTG  150

seq1  TATCATTAACCTG-TTTGAGCACTCAGCACAGTCC-TTTCAGCTAGTCAA  187
      ||||||||||||| ||||||||||||||||||||| ||||||||||||||
seq2  TATCATTAACCTGTTTTGAGCACTCAGCACAGTCCTTTTCAGCTAGTCAA  200

seq1  AAAGGTAAGT-CCCATTATTGTCTTTGTTTTATGAATGAATAAATTAAGA  236
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTAAGTCCCCATTATTGTCTTTGTTTTATGAATGAATAAATTAAGA  250

seq1  CTCCCAAAGT-AAAGTGGCCTGCCTAGGGATGCT-AAAGGCACCCCCCCC  284
      |||||||||| ||||||||||||||||||||||| |||||||||||||||
seq2  CTCCCAAAGTAAAAGTGGCCTGCCTAGGGATGCTAAAAGGCACCCCCCCC  300

seq1  AAAACAAACAAAACAAAACAACAATAACAAAACAGATATACAGAGTCACA  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAACAAAACAAAACAACAATAACAAAACAGATATACAGAGTCACA  350

seq1  GCCAGGAGATGCGCTTACTGTGAAAAGCATGGGGCTGAAGTGAGTCTATC  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAGATGCGCTTACTGTGAAAAGCATGGGGCTGAAGTGAGTCTATC  400

seq1  TAGCGTCTCTGTTGTCAGTAAAAATGATATGGGATGATTGACAGCTAACT  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGTCTCTGTTGTCAGTAAAAATGATATGGGATGATTGACAGCTAACT  450

seq1  TTCCCCTCCTAGAAAGTGTTTTTTGAGGCATAGCCCCCTCTTTCTTGATC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTCCTAGAAAGTGTTTTTTGAGGCATAGCCCCCTCTTTCTTGATC  500

seq1  ATAACCAGAAAACAAATGTTTCACCAGGCACTGTGTAAGGTAGCACACTG  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCAGAAAACAAATGTTTCACCAGGCACTGTGTAAGGTAGCACACTG  550

seq1  TGCCCATTGTCCGTTTAAGAAACGGTGAATGAAGAACTACAATGAAGTAA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATTGTCCGTTTAAGAAACGGTGAATGAAGAACTACAATGAAGTAA  600

seq1  GAAATATGGGCGCCATACTACAGTAAATATTCTTCCATATCCTCAGCCTC  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATGGGCGCCATACTACAGTAAATATTCTTCCATATCCTCAGCCTC  650

seq1  CTATTTTGATGCCTTTGGGTAGGAATGATTGAAATACCTGATAGAGAAAT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTGATGCCTTTGGGTAGGAATGATTGAAATACCTGATAGAGAAAT  700

seq1  GGAAGCTCTGAAGGTAGAAAACGGCATTATTTATTTGGGGATTAATAAGG  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTCTGAAGGTAGAAAACGGCATTATTTATTTGGGGATTAATAAGG  750

seq1  TAAATGACAATACCTTTTATATGCAACAATTATAGGAATTTCCTATATAA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGACAATACCTTTTATATGCAACAATTATAGGAATTTCCTATATAA  800

seq1  ATTTCTCTACCTAGACATTCTGTTTTTCCTTTCAGCTTTTCTAGCTATTA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTACCTAGACATTCTGTTTTTCCTTTCAGCTTTTCTAGCTATTA  850

seq1  CAGAATTC  842
      ||||||||
seq2  CAGAATTC  858