BAC Information

Click to search

BAC

Clone NameB6Ng01-096G09
Chromosome6 (Build37)
Map Location 68,421,981 - 68,422,777
singlet/doubletsinglet
Overlap geneIgk
Upstream geneIl23r, Tacstd2, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102
Downstream geneIgkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096G09.bB6Ng01-096G09.g
ACCDH907061DH907062
length1,252942
definitionDH907061|Mus musculus domesticus DNA, BAC clone: B6Ng01-096G09, 5' end.DH907062|Mus musculus domesticus DNA, BAC clone: B6Ng01-096G09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatgatcgtgagcccactgtcgtacttctctggctgtgaaatga
gttccttggtcagaagcaatactgtgtggaataccatgacgatagatgag
gcattctgtcagtccgtgaatggtggttttagcagaggcattacgtgcag
gaaaggcaaatccataaccagaataagtatctactccagtaagaacaaaa
cgctgtcctttccacgaaggaagtggtccaatgtagtcaacctgccacca
ggttgctggctggtcacctcgaggaatggtgccatatctggggctcagtg
ttggtttctgctgttggcagatctggcaatcagcagcagctgtagccagg
tcagccttggtgagtggaagcccatgttgctgagcccaagcataacctcc
atctcgaccaccatggccactttgttcatgtgcccattgagcaatgacag
ggatggctggggagagaggctgattgtccacagaacgggtcatcttatcc
acttgattattgaactcctcctcagctgaagtcaccttttggtgagcatt
tacatgggacacaaatatcttcacatcctttgcccatttggagagatcta
tccacatacttcttccccagatgtctttctcaccaattttccaattgtga
tctttccaagtccctgaccatccagccaatccattggctacagcccatga
gtcagtgtataatcgtacatctggccatttcttcttgcaaacaaactgta
ataccatgtgtactgcccgaagttctgcccactgtgaagatttcccttca
cctgtgtctttcaaggttgtcccagaaaggggttgtaatgctgcagctgt
ccacttctgggtggtgcctgcataacgtgcagagccatcagtaaaccagg
ctctagtcttctcctcttcggtcagttgatcataagggaacaccccatga
ggctatagtgcatgcttggcagcagatggcattgtaacaggagtagaaac
cataggcatttgagcaacttcttcatgtacttgcttgtgcttcaggactt
gctctggcccgatcacgtatataccactttcaattgtaataaaactgctg
ctgtgacgtccactttatagacttgcagctgatagaccagctcatgatgg
gtagtcagggtgatagtgacatgtgttctatgtcaacgtcagtcccatag
catgacagcagaccggttttcaagggaaatggtcgcagatagtgagactg
gt
gaattcaatatctattactcctttgatgcattagacatcatcaatcactg
catatgtcacatttgttttactgactcactaagtaaacatggaggggttg
tcagggtggatatatatatatgtgtgtgtgtgtataaaaccaggaattcg
cccatgtctttttgtttaaaactatctctaatcactattacatcctacat
agcatgtaaactatgttgatataaataatagaacttttttaataaagata
taaaaacagaaggaagtaaaaatagtgtttaagtttttaaagaatcatga
aatatcggatgtaggattggttaggatcatttcccaatctttggttgcca
ttttgttccattgacagtgtctgatagaaaactaatatctaatatataca
aagaactcaagcagttagactccagagaaccaaataaccataataaaatg
aggaacagaactaaacagagaattctcaactgagaaaactccaatggctg
agaagcacctaaagaaatgttcaacatccttcatcatcatgcaaataaaa
acaaacttgagattccacctcacaacagactgaattgctaagatctaaaa
ctcagttcacagcagatgctggccaagatgtggaaaaaaataggaagact
ctttccattgctggtgggattgcaggctggtataaccactcttgaaaatc
agtatgccatttcctcagaaaattgggacaaagtattacctgaggactga
gctataccactccttggtatatatccagaagatgttctaacatgtaataa
ggacacatgtcccactatgttcataacagccttatttataatagccaaga
agctggaaacaacccagatgtccctcaacagaggaatggatacagaaaat
ggagtccattcacataatgaagtactattcagcttattaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_68421981_68422777
seq2: B6Ng01-096G09.g_67_867

seq1  GAATTCAATATCTATTACTCCTTTGATGCATTAGACATCATCAATCACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATCTATTACTCCTTTGATGCATTAGACATCATCAATCACTG  50

seq1  CATATGTCACATTTGTTTTACTGACTCACTAAGTAAACATGGAGGGGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTCACATTTGTTTTACTGACTCACTAAGTAAACATGGAGGGGTTG  100

seq1  TCAGGGTGGATATATATATATGTGTGTGTGTGTATAAAACCAGGAATTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTGGATATATATATATGTGTGTGTGTGTATAAAACCAGGAATTCG  150

seq1  CCCATGTCTTTTTGTTTAAAACTATCTCTAATCACTATTACATCCTACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTCTTTTTGTTTAAAACTATCTCTAATCACTATTACATCCTACAT  200

seq1  AGCATGTAAACTATGTTGATATAAATAATAGAACTTTTTTAATAAAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTAAACTATGTTGATATAAATAATAGAACTTTTTTAATAAAGATA  250

seq1  TAAAAACAGAAGGAAGTAAAAATAGTGTTTAAGTTTTTAAAGAATCATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACAGAAGGAAGTAAAAATAGTGTTTAAGTTTTTAAAGAATCATGA  300

seq1  AATATCGGATGTAGGATTGGTTAGGATCATTTCCCAATCTTTGGTTGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCGGATGTAGGATTGGTTAGGATCATTTCCCAATCTTTGGTTGCCA  350

seq1  TTTTGTTCCATTGACAGTGTCTGATAGAAAACTAATATCTAATATATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTCCATTGACAGTGTCTGATAGAAAACTAATATCTAATATATACA  400

seq1  AAGAACTCAAGCAGTTAGACTCCAGAGAACCAAATAACCATAATAAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTCAAGCAGTTAGACTCCAGAGAACCAAATAACCATAATAAAATG  450

seq1  AGGAACAGAACTAAACAGAGAATTCTCAACTGAGAAAACTCCAATGGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAGAACTAAACAGAGAATTCTCAACTGAGAAAACTCCAATGGCTG  500

seq1  AGAAGCACCTAAAGAAATGTTCAACATCCTTCATCATCATGCAAATAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCACCTAAAGAAATGTTCAACATCCTTCATCATCATGCAAATAAAA  550

seq1  ACAAACTTGAGATTCCACCTCACAACAGACTGAATTGCTAAGATCTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTTGAGATTCCACCTCACAACAGACTGAATTGCTAAGATCTAAAA  600

seq1  CTCAGTTCACAGCAGATGCTGGCCAAGATGTGG-AAAAAATAGGAAGACT  649
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTCAGTTCACAGCAGATGCTGGCCAAGATGTGGAAAAAAATAGGAAGACT  650

seq1  C-TTCCATTGCTGGTGGGATTGCAGGCTGGTATAACCACTC-TGAAAATC  697
      | ||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTTTCCATTGCTGGTGGGATTGCAGGCTGGTATAACCACTCTTGAAAATC  700

seq1  AGTATGCCATTTCCTCAGAAAATT-GGACAAAGTATTACCTGAGGACTGA  746
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGTATGCCATTTCCTCAGAAAATTGGGACAAAGTATTACCTGAGGACTGA  750

seq1  GCTATACCACTCCTTGGTATATATCCAGAAGATGTTCTAACATGTAATAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATACCACTCCTTGGTATATATCCAGAAGATGTTCTAACATGTAATAA  800

seq1  G  797
      |
seq2  G  801