BAC Information

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BAC

Clone NameB6Ng01-097C14
Chromosome6 (Build37)
Map Location 79,605,340 - 79,731,406
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC384440, LOC621815
Downstream geneLOC100043392, Lrrtm4, LOC100043390
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097C14.bB6Ng01-097C14.g
ACCDH907607DH907608
length1,1221,127
definitionDH907607|Mus musculus domesticus DNA, BAC clone: B6Ng01-097C14, 5' end.DH907608|Mus musculus domesticus DNA, BAC clone: B6Ng01-097C14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,730,283 - 79,731,406)(79,605,340 - 79,606,473)
sequence
gaattcccaactgaggaatcttgaatggctgagaagctcctaaagaaata
ttcaacatccttagtcatcagggaagtgcaaatcaaacagaccctgatag
tccacctcacaccaatccgaatggttaaaattaaaaactcgggtaacagc
agatgctggtgaggatgtggagaaaggaaaacactcctccattactggtg
ggactgcaagatggtatttcactttaaatgtcattaaaaggcataattgc
tatccttctaaaaataagcgttcaagaatgtctacaaaggagatatgcct
tcaattggtccaatgcactgtttctcaaagtatggactcatgttcatgtt
tgcatttatggacataggtgaaattgatgatttccctcactccaggctac
acacacatgttcgcatacgcatgcacacacacacacacagacacacacac
acacacacacagacacacacacacacacacacacacactcactcacacac
agacagacacacacatacacacatgcatgcaagcagcacatgcatgtgct
cctacaactcgtgatttttctatatcaagagtttccagtagccttgaatg
gcattatcttagtctagaagtgattgtcaaatatctagagatgcttgcca
aatatcactatttcagaagaaaataatgttaaatacaattaagtaatttc
agttttcctttgcaaataaatagaaatatttataagacctttacttttcg
tttgtgtattcattcattacttttttttttctttgaggggccaaatattc
tattgccctacttgctgaaattaaattagggctaaaatatgagagcctga
attttcacagtgtgattaaaattactaaaataaaatgattaataatagct
gtgtttataggtagcaaaattcaagttcatttaaaaatgtgatatattag
tttgctctctaattttacagtcagaaaatattttttttctcatcctataa
acgtcttagctttacaacaccttcagctatgcaaggtgttttaaaataat
agcagtccttatcctttaagggaatatgagtctcatttcaaagggtcaaa
gaataagctaattctggggaaa
gaattcaacagttttttgctgagatttttgttcacaataggtattggttt
gaaagtattctgacaattactttttttggtgtgtaacctgtaaactgtct
agttttgggacaatggttacactagtctcatttaaaaactttggacttac
tttatttaactctaggaaggatgattttgtaatgatcatagttttctaaa
tagttaataaaatactcaagtgaagtcataaaaactcaggacattttttg
ttaactcttaaataattattcagattatctttcttgactttttaaaaaga
tggaatctcactatgtatcagtggctgacataaaaaatagtatatgggcc
aggctgtatgtaaagtgacagagatgtgcttttctctgctttcagaatgc
tgggattaaattcatgcatgaccatattctgcttcattgtgttttcaaag
cccagcctatttctgatgagctgctgagtggaggagcataatgggaactc
tctcaagctttatattgggatatgcacttagccctgttgattgattcatc
acacaggttcacggtatatacttactttcaatctgtttagagactaatca
ttacttttttttttctttatgtatgtgcaagtttgtgtgtgattgtgtgt
gtgtgtgtgtacctgtgagtatatggccagaagacatacaaagttttatt
tctgtgatgctgcccacattgctttataatctgtgttctcacagtaggat
agcacttgctaagtaggccaggccctaaggatctaccaatctcagacttc
ccaacactgaaattacaagtgcatgctacaatacctggatttttaaaata
tttgttctgaagctcacagcaaagcacttaaccagcagataccttctcag
gccagagacattttatttatttatttatttatttatttatttatttattt
atttatttgactaggactctgagccactcattttgtccatcagtttactg
ttttcacttcatttgaaatttggtggagtctttactgatctgaagctctc
ctgttttcctgaccaggataaaaatttctaagcccatccttttcaaggtg
gagatgtgaagctttcctgaataaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_79730283_79731406
seq2: B6Ng01-097C14.b_47_1168 (reverse)

seq1  TTTCCCCAGAA-TAGCTTA-TCTTTGACACCTGTGAAATTGGAGACTCAT  48
      ||||||||||| ||||||| |||||||| ||| ||||||  |||||||||
seq2  TTTCCCCAGAATTAGCTTATTCTTTGAC-CCTTTGAAAT--GAGACTCAT  47

seq1  ATTCCC-TGAAGGATAAGGACTGCTATTTAATATTAAAACACCTTGCATA  97
      |||||| | |||||||||||||||||||  || |||||||||||||||||
seq2  ATTCCCTTAAAGGATAAGGACTGCTATT--ATTTTAAAACACCTTGCATA  95

seq1  GCTGGAGGTGTTGTAAAGCTAAGACGTTTATAGGATGAGAAAAAAAATA-  146
      |||| |||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCTGAAGGTGTTGTAAAGCTAAGACGTTTATAGGATGAGAAAAAAAATAT  145

seq1  TTTCTGACTGTAAAATTAGAGAGCAAACTAATATTATCACATTTTTAAAT  196
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTCTGACTGTAAAATTAGAGAGCAAACTAATA-TATCACATTTTTAAAT  194

seq1  GAACTTGAATTTTGCTACCTATAAACACAGCTATTATTAATCATTTTATT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGAATTTTGCTACCTATAAACACAGCTATTATTAATCATTTTATT  244

seq1  TTAGTAATTTTAATCACACTGTGAAAATTCAGGCTCTCATATTTTAGCCC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAATTTTAATCACACTGTGAAAATTCAGGCTCTCATATTTTAGCCC  294

seq1  TAATTTAATTTCAGCAAGTAGGGCAATAGAATATTTGGCCCCTCAAAGAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAATTTCAGCAAGTAGGGCAATAGAATATTTGGCCCCTCAAAGAA  344

seq1  AAAAAAAAGTAATGAATGAATACACAAACGAAAAGTAAAGGTCTTATAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGTAATGAATGAATACACAAACGAAAAGTAAAGGTCTTATAAA  394

seq1  TATTTCTATTTATTTGCAAAGGAAAACTGAAATTACTTAATTGTATTTAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTATTTATTTGCAAAGGAAAACTGAAATTACTTAATTGTATTTAA  444

seq1  CATTATTTTCTTCTGAAATAGTGATATTTGGCAAGCATCTCTAGATATTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTTCTTCTGAAATAGTGATATTTGGCAAGCATCTCTAGATATTT  494

seq1  GACAATCACTTCTAGACTAAGATAATGCCATTCAAGGCTACTGGAAACTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATCACTTCTAGACTAAGATAATGCCATTCAAGGCTACTGGAAACTC  544

seq1  TTGATATAGAAAAATCACGAGTTGTAGGAGCACATGCATGTGCTGCTTGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATAGAAAAATCACGAGTTGTAGGAGCACATGCATGTGCTGCTTGC  594

seq1  ATGCATGTGTGTATGTGTGTGTCTGTCTGTGTGTGAGTGAGTGTGTGTGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGTGTGTATGTGTGTGTCTGTCTGTGTGTGAGTGAGTGTGTGTGT  644

seq1  GTGTGTGTGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGT  694

seq1  GTGTGCATGCGTATGCGAACATGTGTGTGTAGCCTGGAGTGAGGGAAATC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCATGCGTATGCGAACATGTGTGTGTAGCCTGGAGTGAGGGAAATC  744

seq1  ATCAATTTCACCTATGTCCATAAATGCAAACATGAACATGAGTCCATACT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTTCACCTATGTCCATAAATGCAAACATGAACATGAGTCCATACT  794

seq1  TTGAGAAACAGTGCATTGGACCAATTGAAGGCATATCTCCTTTGTAGACA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAACAGTGCATTGGACCAATTGAAGGCATATCTCCTTTGTAGACA  844

seq1  TTCTTGAACGCTTATTTTTAGAAGGATAGCAATTATGCCTTTTAATGACA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAACGCTTATTTTTAGAAGGATAGCAATTATGCCTTTTAATGACA  894

seq1  TTTAAAGTGAAATACCATCTTGCAGTCCCACCAGTAATGGAGGAGTGTTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGTGAAATACCATCTTGCAGTCCCACCAGTAATGGAGGAGTGTTT  944

seq1  TCCTTTCTCCACATCCTCACCAGCATCTGCTGTTACCCGAGTTTTTAATT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTCCACATCCTCACCAGCATCTGCTGTTACCCGAGTTTTTAATT  994

seq1  TTAACCATTCGGATTGGTGTGAGGTGGACTATCAGGGTCTGTTTGATTTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCATTCGGATTGGTGTGAGGTGGACTATCAGGGTCTGTTTGATTTG  1044

seq1  CACTTCCCTGATGACTAAGGATGTTGAATATTTCTTTAGGAGCTTCTCAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCCTGATGACTAAGGATGTTGAATATTTCTTTAGGAGCTTCTCAG  1094

seq1  CCATTCAAGATTCCTCAGTTGGGAATTC  1124
      ||||||||||||||||||||||||||||
seq2  CCATTCAAGATTCCTCAGTTGGGAATTC  1122

seq1: chr6_79605340_79606473
seq2: B6Ng01-097C14.g_69_1195

seq1  GAATTCAACAGTTTTTTGCTGAGATTTTTGTTCACAATAGGTATTGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAGTTTTTTGCTGAGATTTTTGTTCACAATAGGTATTGGTTT  50

seq1  GAAAGTATTCTGACAATTACTTTTTTTGGTGTGTAACCTGTAAACTGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTATTCTGACAATTACTTTTTTTGGTGTGTAACCTGTAAACTGTCT  100

seq1  AGTTTTGGGACAATGGTTACACTAGTCTCATTTAAAAACTTTGGACTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGGGACAATGGTTACACTAGTCTCATTTAAAAACTTTGGACTTAC  150

seq1  TTTATTTAACTCTAGGAAGGATGATTTTGTAATGATCATAGTTTTCTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTAACTCTAGGAAGGATGATTTTGTAATGATCATAGTTTTCTAAA  200

seq1  TAGTTAATAAAATACTCAAGTGAAGTCATAAAAACTCAGGACATTTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAATAAAATACTCAAGTGAAGTCATAAAAACTCAGGACATTTTTTG  250

seq1  TTAACTCTTAAATAATTATTCAGATTATCTTTCTTGACTTTTTAAAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCTTAAATAATTATTCAGATTATCTTTCTTGACTTTTTAAAAAGA  300

seq1  TGGAATCTCACTATGTATCAGTGGCTGACATAAAAAATAGTATATGGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCTCACTATGTATCAGTGGCTGACATAAAAAATAGTATATGGGCC  350

seq1  AGGCTGTATGTAAAGTGACAGAGATGTGCTTTTCTCTGCTTTCAGAATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTATGTAAAGTGACAGAGATGTGCTTTTCTCTGCTTTCAGAATGC  400

seq1  TGGGATTAAATTCATGCATGACCATATTCTGCTTCATTGTGTTTTCAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTAAATTCATGCATGACCATATTCTGCTTCATTGTGTTTTCAAAG  450

seq1  CCCAGCCTATTTCTGATGAGCTGCTGAGTGGAGGAGCATAATGGGAACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCTATTTCTGATGAGCTGCTGAGTGGAGGAGCATAATGGGAACTC  500

seq1  TCTCAAGCTTTATATTGGGATATGCACTTAGCCCTGTTGATTGATTCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGCTTTATATTGGGATATGCACTTAGCCCTGTTGATTGATTCATC  550

seq1  ACACAGGTTCACGGTATATACTTACTTTCAATCTGTTTAGAGACTAATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGTTCACGGTATATACTTACTTTCAATCTGTTTAGAGACTAATCA  600

seq1  TTACTTTTTTTTTTCTTTATGTATGTGCAAGTTTGTGTGTGATTGTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTTTTTTTTCTTTATGTATGTGCAAGTTTGTGTGTGATTGTGTGT  650

seq1  GTGTGTGTGTACCTGTGAGTATATGGCCAGAAGACATACAAAGTTTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTACCTGTGAGTATATGGCCAGAAGACATACAAAGTTTTATT  700

seq1  TCTGTGATGCTGCCCACATTGCTTTATAATCTGTGTTCTCACAGTAGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGATGCTGCCCACATTGCTTTATAATCTGTGTTCTCACAGTAGGAT  750

seq1  AGCACTTGCTAAGTAGGCCAGGCCCTAAGGATCTACCAATCTCAGACTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTGCTAAGTAGGCCAGGCCCTAAGGATCTACCAATCTCAGACTTC  800

seq1  CCAACACTGAAATTACAAGTGCATGCTACAATACCTGGATTTTTAAAAAT  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCAACACTGAAATTACAAGTGCATGCTACAATACCTGGATTTTT-AAAAT  849

seq1  ATTTGTTCTGAAGCTCACAGCAAAGCACTTAACCAGCAGATACCTTCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTCTGAAGCTCACAGCAAAGCACTTAACCAGCAGATACCTTCTCA  899

seq1  GGCCAGGAGACATTTTATTTATTTATTTATTTATTTATTTATTTATTTAT  950
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCA-GAGACATTTTATTTATTTATTTATTTATTTATTTATTTATTTAT  948

seq1  TTATTTATTTGACTAGTGACTCTGAGCCACTCATTTTTGTCCATCAGTTT  1000
      |||||||||||||||| |||||||||||||||| ||||||||||||||||
seq2  TTATTTATTTGACTAG-GACTCTGAGCCACTCA-TTTTGTCCATCAGTTT  996

seq1  ACTGTTTTCACTTCATTTGAAATTTGTTGGAGTCTTTACTGTATCCTGAG  1050
      |||||||||||||||||||||||||| |||||||||||||| |||   ||
seq2  ACTGTTTTCACTTCATTTGAAATTTGGTGGAGTCTTTACTG-ATCTGAAG  1045

seq1  CTCTACTTTGTTTTCATGAACAAAGATAAGAAATATCATAGCCCATCC-T  1099
      |||| |  ||||||| || || | ||||| |||| ||  ||||||||| |
seq2  CTCTCC--TGTTTTCCTG-ACCAGGATAA-AAATTTCTAAGCCCATCCTT  1091

seq1  TTCAATGTTGAGATGTG-AGCCTTCCTGATTAAAAA  1134
      ||||| || |||||||| ||| ||||||| ||||||
seq2  TTCAAGGTGGAGATGTGAAGCTTTCCTGAATAAAAA  1127