BAC Information

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BAC

Clone NameB6Ng01-097H15
Chromosome6 (Build37)
Map Location 85,609,301 - 85,609,816
singlet/doubletsinglet
Overlap geneAlms1
Upstream geneExoc6b, LOC665129, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4
Downstream geneLOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097H15.bB6Ng01-097H15.g
ACCDH907845DH907846
length1,0831,008
definitionDH907845|Mus musculus domesticus DNA, BAC clone: B6Ng01-097H15, 5' end.DH907846|Mus musculus domesticus DNA, BAC clone: B6Ng01-097H15, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttaggtctgtgccccattttttagggggttatttgattt
tctggagtccaccttcttgagttctttatatatatattggatattagtcc
cctatctgatttaggataggtaaagatcctttcccaatctgttggtggcc
tttttgtcttattgacagtgtcttttgccttgcagaagctttgcaatttt
atgaggtcccatttgtcaattctcaatcttacagcacaagccattgctgt
tctattcaggaatttttcccctgtgcccatatcttcgaggctttttctca
ctttctcctctacaagtttcagtgtctctggttttatgtggagttcctta
atccacttagatttgaccttagtacaagtagataggaatggatcagtttg
aattcttctacatgataaccgccagttgtgccaaccaaggatgtatcttg
tgctgcagctataatatgtaagagtcacccaggtgctactggttatgaag
acatgaaggcattatgaagaacatctgtggcttggcactgtgtgaggcca
tggaaggctattggtgaaagtgcagactcacttgcagttaatggcccagg
acggaaggggtcatgcaaaggagttgaggcctggcaccatgaagagagcc
tttgagaggctgttggtgaagcatagttgcagaggaagaccctgttatta
aacgcgttctcacgcccggccaggaagaacaccacagaccagaatcttct
gcggcaaaactttattgcttacatcttcaggagcaagagtgtaagaagca
agagcgcaagaagcaagagagagcgaaaacgaaaccccgtccctattaag
gagaattctccttcgcctaggacgtgtcactccctgattggctgcagccc
atcggccgagttgacgtcacgaggaaggcagagcacatggagtgaagaac
caccctcggcacatgcgcagatattggttaccacttagacacagctgtca
gcgcatcttgtaacggcgatgtgggcgcggctccacatctccccctttcc
ttttaatagaagcaaataggccacccaatatta
gaattcagtagagtaccttctgtggaatagtttgaggagaactgaaatta
ggtcttctttgaaggcctgatagaattctgcactaaacccatctggtcct
gggccttttttgtttgggaaactactaatgactacttctatttctttagg
ggatatgggactgtttagatcatttatctgatcgtgatttaattttggta
gctagtatctgtctaggaatttgtccattttatccaggttttccaatttt
gttgagtatagccctttgtagtaggatctgatgatgctttggatttcctc
aggttctgttgttatgtctcccttttcatttctgattttgttaattaaga
tattgtccctgtgccctctagttagtctggctattatttatcttgttgat
tttcttaaagaaccaactcctggtttggttgattctttttgtttccactt
ggttgatttcagccctgattttgattatttcctgctgtttactcctcttg
ggtgtatttgcttcctttggttctagagctttcaggtgtgttgtaaagct
gctagtgtgtgctctctctagtttctttttagaggcactcagagctatga
gatttcctcttaagaatgctttcactgtgtcctatatgtttaggtatgtt
gtggcttcattaaactttaaaaagtctttaatttcttttctttatttctt
ccttgaccaaggtttcattgagtagagtgttgttcagcttccacatgaat
gttggctttctattatttatgttattgaagatcagccttagttcctcgtg
atctgataggatgcattggataatgtcaatatctttgtatttgttgaggc
ctgttttgtgaccaattatatggtcagtttttggagaaggtaccatgaaa
tgctgagaagaagtatatccttttgtttagggtaaatgttctgtagatat
ctgttaattcatttgctcacactcttgtttcaagtgtctctgtttagttt
ctgttcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_85609301_85609816
seq2: B6Ng01-097H15.g_575_1073 (reverse)

seq1  AACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTGATGAAACAA  50
      |||||||||||||||| |||||  |||    ||||  |||| || | |||
seq2  AACAGAAACTAAACAGAGACAC-TTGA----AACAAGAGTG-TG-AGCAA  43

seq1  ATGGACTTAACAGATATCTACAGAACATTTTATCCTAAAACAAAGGATAT  100
      || || ||||||||||||||||||||| |||| ||||||  |||||||||
seq2  AT-GAATTAACAGATATCTACAGAACA-TTTACCCTAAACAAAAGGATAT  91

seq1  ACCTTCTTCTCAGCACCTCATGGTACCTTCT-CTAAAATTGACCACATAA  149
      | |||||||||||||  |||||||||||||| | |||| |||||| ||||
seq2  A-CTTCTTCTCAGCATTTCATGGTACCTTCTCCAAAAACTGACCATATAA  140

seq1  TTGGTCACAAAACAAGCCTCAACATATACAAAAATATTGAAATTGTCCCA  199
      |||||||||||||| ||||||||| ||||||| ||||||| ||| ||| |
seq2  TTGGTCACAAAACAGGCCTCAACAAATACAAAGATATTGACATTATCCAA  190

seq1  TGCATCCTATCAGATCACCATGGACTAAGGCTGATCTTCAATAACAAAAT  249
      |||||||||||||||||| | | ||||||||||||||||||||||   ||
seq2  TGCATCCTATCAGATCACGAGGAACTAAGGCTGATCTTCAATAAC---AT  237

seq1  AAATAATAGAAAGCCAACATTCATGTGGAAACTGAACAACACTCTTCTCA  299
      |||||||||||||||||||||||||||||| |||||||||||||| ||||
seq2  AAATAATAGAAAGCCAACATTCATGTGGAAGCTGAACAACACTCTACTCA  287

seq1  ATGATACCTTGGTCAAGGAAGGAATAAAG-AAAGAAATTAAGGACTTTTT  348
      |||| |||||||||||||||| ||||||| ||||||||||| ||||||||
seq2  ATGAAACCTTGGTCAAGGAAGAAATAAAGAAAAGAAATTAAAGACTTTTT  337

seq1  GGAGTTTAATGAAAATGAAGCCACAACATACCCAAACTTATGGGACACAA  398
        |||||      ||||||||||||||||||| |||| ||| ||||||| 
seq2  AAAGTTT------AATGAAGCCACAACATACCTAAACATATAGGACACAG  381

seq1  TGAAAGCATTCCTAAGAGGAAAACTCATAGCTCTGAGTGCCTCCAAAAAG  448
      ||||||||||| |||||||||| |||||||||||||||||||| ||||||
seq2  TGAAAGCATTCTTAAGAGGAAATCTCATAGCTCTGAGTGCCTCTAAAAAG  431

seq1  AAACTAGAGAGAGCACACATTAGCAGCTTGACAACACACCTAAAAGCTCT  498
      ||||||||||||||||||| ||||||||| ||||||||||| ||||||||
seq2  AAACTAGAGAGAGCACACACTAGCAGCTTTACAACACACCTGAAAGCTCT  481

seq1  AGATCAAAAGGAAGCAAA  516
      ||| | ||||||||||||
seq2  AGAACCAAAGGAAGCAAA  499