BAC Information

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BAC

Clone NameB6Ng01-097O20
Chromosome6 (Build37)
Map Location 138,530,421 - 138,531,382
singlet/doubletsinglet
Overlap geneLmo3
Upstream geneEps8, Strap, Dera, 9830102E05Rik, Mgst1
Downstream geneIgbp1b, EG668196, EG632971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097O20.bB6Ng01-097O20.g
ACCDH908168DH908169
length1,239972
definitionDH908168|Mus musculus domesticus DNA, BAC clone: B6Ng01-097O20, 5' end.DH908169|Mus musculus domesticus DNA, BAC clone: B6Ng01-097O20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaagaaggtggagtccagaaaatcaaataacccatttaaaaaatg
gggctcagagctgaacaaagaattctcacttgaggaatagcgaatggctg
agaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaa
atcaaaacaagcctgagagattccacctcacaccagtcagaatggctaag
atcaaaaattcaggtgacagcagatgctggtgaggatgtggagaaagagg
aatactcctccattgttgtgggattgcaaacttgtacaaccactttggaa
atcagtctggcggttcctcagaaaattgaacatagtactaccggaggatc
ccgcaatacctctcctgggcatatatccagaagatgtcccaaccgttaag
aaggacacatgctccactatgttcatagcagccttatttataatagccag
aagctggaaagaacccagatgcccctcaacagaggaatggatacagaaaa
tgtggtacatttacacaatggagtactactcagctattaaaaagaatgag
tttatgaaattcctaagcaaatagatggacctggagggcatcatcctgag
tgaggtaacccaatcacaaaggaactcgcacaatatgtactcactgataa
atggatattagcccagaaacttaggatacacaagatataagatacaattt
gcaaaacacataaaaactcaagaagaacgaagaccaaagtgtggacactt
tgccccttcttagaaatgggaacaaaacacccatggaaggagttacagag
acaaaatttggagctgtgacgaaaggatggaccatctagtgattgccata
tccagggatccatcccatatcagcttccaaacgctaacaccattgcatac
actaagcaagattttgctgaaaggacccagatatagctgtctcttgtgag
actatgccggggtcttagcaaacacagaagtggatgctcacagtcagcta
ttggatgggtcacacggtccctcaatggaggagctagtagaaaagtaccc
aaaggaacctaaagggaactgcaaccctattagatggaacaacaaatatg
acttcagttaccccgggagctcctgactcctagctgcattggaatcaaaa
agatgggcctagccggccatacctctgaaaaggaaggacctttggacttt
gcagaacattatattatgcgcccccagagacgaccaagg
gaattctttctggaaatcactaaagaccatgtatgaccgagaaacctgcc
tccctgtgcatagcagaacagcagtgctcacacctcgggagagtcaggga
aacctggcagccgtttcagcgtcttctggtcctttgattaaagtcttccc
acgctggcccccagtcccaaaccaactggacccttctgctcttccagccg
tggtagtggaccactgtaatgtgccgctctgaaagcctactttactttct
gtaaccttcccttccatccaatgaaaagcaactgtggccttttacaaagt
aaatgagcaaatattttcccagtgttcaccaggttagatccccatttaat
taaactggctcattatgtccctatctgattagcagagtagaatcaattat
tcaatgcacaaacatggctgcaggagcttgaggtgtatacagagctgttc
atttaattccaaggacactaattaggtacaaagcaagcaataactttaac
aattgcaggcacaagcatacatgcagtacaggacaaggggaagggagggg
gaagaaaacaggccttcattttcttaataagctggattctctttccccct
aacagggtcaagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccagaaagc
aagagaggatgaaatgtagatcaagaaagctaagcatccaggaaaaaacc
ccccggggatttgcatatgtaatgggggtttctgctactttttgtacttt
ttaaatcaaacagtaggcaattatccaaattattggacagcagatttctc
catttcacctggcaaataaggccattaataagcttttctaatgcaaaagt
gactaattaactaatggaatggaactcggaaagctgggatatcaaaacct
gtccaccacatttttgtggaaacacaggggaactaattattttaattatc
aaaacagctaattaaaataaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_138530421_138531382
seq2: B6Ng01-097O20.g_70_1041

seq1  GAATTCTTTCTGGAAATCACTAAAGACCATGTATGACCGAGAAACCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTGGAAATCACTAAAGACCATGTATGACCGAGAAACCTGCC  50

seq1  TCCCTGTGCATAGCAGAACAGCAGTGCTCACACCTCGGGAGAGTCAGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTGCATAGCAGAACAGCAGTGCTCACACCTCGGGAGAGTCAGGGA  100

seq1  AACCTGGCAGCCGTTTCAGCGTCTTCTGGTCCTTTGATTAAAGTCTTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGCAGCCGTTTCAGCGTCTTCTGGTCCTTTGATTAAAGTCTTCCC  150

seq1  ACGCTGGCCCCCAGTCCCAAACCAACTGGACCCTTCTGCTCTTCCAGCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTGGCCCCCAGTCCCAAACCAACTGGACCCTTCTGCTCTTCCAGCCG  200

seq1  TGGTAGTGGACCACTGTAATGTGCCGCTCTGAAAGCCTACTTTACTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTGGACCACTGTAATGTGCCGCTCTGAAAGCCTACTTTACTTTCT  250

seq1  GTAACCTTCCCTTCCATCCAATGAAAAGCAACTGTGGCCTTTTACAAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCTTCCCTTCCATCCAATGAAAAGCAACTGTGGCCTTTTACAAAGT  300

seq1  AAATGAGCAAATATTTTCCCAGTGTTCACCAGGTTAGATCCCCATTTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGCAAATATTTTCCCAGTGTTCACCAGGTTAGATCCCCATTTAAT  350

seq1  TAAACTGGCTCATTATGTCCCTATCTGATTAGCAGAGTAGAATCAATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGGCTCATTATGTCCCTATCTGATTAGCAGAGTAGAATCAATTAT  400

seq1  TCAATGCACAAACATGGCTGCAGGAGCTTGAGGTGTATACAGAGCTGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGCACAAACATGGCTGCAGGAGCTTGAGGTGTATACAGAGCTGTTC  450

seq1  ATTTAATTCCAAGGACACTAATTAGGTACAAAGCAAGCAATAACTTTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTCCAAGGACACTAATTAGGTACAAAGCAAGCAATAACTTTAAC  500

seq1  AATTGCAGGCACAAGCATACATGCAGTACAGGACAAGGGGAAGGGAGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCAGGCACAAGCATACATGCAGTACAGGACAAGGGGAAGGGAGGGG  550

seq1  GAAGAAAACAGGCCTTCATTTTCTTAATAAGCTGGATTCTC-TTCCCCCT  599
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAAGAAAACAGGCCTTCATTTTCTTAATAAGCTGGATTCTCTTTCCCCCT  600

seq1  AACAGGGTCAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAGAAAGC  649
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AACAGGGTCAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAGAAAGC  650

seq1  AAGAGAGGATGAAATGTAGATCAAGAAAGCTAAGCATCCAGGAAATAACC  699
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAGAGAGGATGAAATGTAGATCAAGAAAGCTAAGCATCCAGGAAAAAACC  700

seq1  CCCC-GGGATTTGCATATGTAATGGGG--CTCTGCTAC-TTTTGTACTTT  745
      |||| ||||||||||||||||||||||   |||||||| |||||||||||
seq2  CCCCGGGGATTTGCATATGTAATGGGGGTTTCTGCTACTTTTTGTACTTT  750

seq1  AT-AATCAAACAGTAGGCAATTATCCAAATTATT-GACAGCAGATTTCT-  792
       | ||||||||||||||||||||||||||||||| |||||||||||||| 
seq2  TTAAATCAAACAGTAGGCAATTATCCAAATTATTGGACAGCAGATTTCTC  800

seq1  CATTTCAACTGCAAATTAAGGCCATTAATAAAGCTTTCTAATGCAAAAGT  842
      ||||||| |||  || |||||||||||||||   ||||||||||||||||
seq2  CATTTCACCTGGCAAATAAGGCCATTAATAAGCTTTTCTAATGCAAAAGT  850

seq1  GACTAATTAACTAATGGAATGGAACTCGG-AAGCTGTGATATCAAAACCA  891
      ||||||||||||||||||||||||||||| |||||| |||||||||||| 
seq2  GACTAATTAACTAATGGAATGGAACTCGGAAAGCTGGGATATCAAAACCT  900

seq1  GTCCACCACA-TATTGTGGAAACACAGGGGAACTAATTAGTTTAATTATC  940
      |||||||||| | |||||||||||||||||||||||||| ||||||||||
seq2  GTCCACCACATTTTTGTGGAAACACAGGGGAACTAATTATTTTAATTATC  950

seq1  AAAACAGCTAATTAAAATTACA  962
      |||||||||||||||||| |||
seq2  AAAACAGCTAATTAAAATAACA  972