BAC Information

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BAC

Clone NameB6Ng01-099N23
Chromosome6 (Build37)
Map Location 138,841,092 - 138,976,794
singlet/doubletdoublet
Overlap genenone
Upstream gene9830102E05Rik, Mgst1, Lmo3, Igbp1b, EG668196
Downstream geneEG632971, LOC100043898, Pik3c2g, Plcz1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099N23.bB6Ng01-099N23.g
ACCDH909546DH909547
length8691,096
definitionDH909546|Mus musculus domesticus DNA, BAC clone: B6Ng01-099N23, 5' end.DH909547|Mus musculus domesticus DNA, BAC clone: B6Ng01-099N23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,841,092 - 138,841,938)(138,975,693 - 138,976,794)
sequence
gaattctgtgacagtgttctataaagaagaagacaaacgagcatgaagag
aggacaggaaatttgaatcctaaatgtgacttcctgtatgaaaacatgta
actttgggcaatgactttcattttcccttgatgatggaagaagatgagat
tccctggattcaagaagactctatctaaaaaatgcatttaataaataatt
taaataaaatacatccccattggcccctaaacaaaattcatttttatcat
ttatagaacattttgtcataagctttacttaataccacatttctcgattc
tgggtctacatccagaatgtgtgcgattcatctgagtcacacttgctgtg
tgaaaccaaatccacaggggactctggttaaaaattcttttaagtcaata
ttttaaaagtattattgggacacttcattttcagtcatttatttgtattt
tgcatttatttagatcattttgaactatatgaatatatatatatatacac
acatacatgtattgttattttgtttgaaagttatatatatgcatatatac
actcaaatgactctccccacattctcttatctcctttccacctatatcaa
gatgttctgtctttcctccagttcctttcccacatcatgattgtggtttg
tgaaatgtggtttaatcaagtcattctctgtaatttctgtattgtaaatg
ttcattggagcctaaagaggacatatgcacacacatgtacacatatgtgg
ctctttcttctctctctctctctctctctctctctctctctctctctctc
tctcactctctctcagtctctctctctctcaccctctctctctctctctc
tctcactctctctctctct
gaattcagatggaagtatggaggtacacacaaacccaaaaacaagtttca
gaaaatatcttcccattaaagataatttacaactttaaatgttgtttata
tttaaacattgtttgaaattattgtgtgatgtctgaaactttaaagtcag
aaataatgttaaaatcacagtttcagtgtggactgtctacagaggctata
tatataacaaactctttacatattatatcatgtctttataaaaacataat
gtgatagacagtgttatcttcatgttggaaaaaaaaactggccctaacaa
aatttgaataaccagatcaggatgatttggaacgagttaagcctagtctc
ccaccagacatcctgtaaattgctttcagtctgtttccacaagctgtttt
tgtttgaacaactcaaacaacagagtacatcgtctgtaagtagcattttc
tatcatcagaaactggatataatgtttttgcttatgttaagtcaaatctg
gcctatcaagatgctagacatgaattagtaatactattcagttcatgatt
ggtctattatacatcgaagattcaaatatctgattctatctaattctgaa
actaacctacttggccaagctttggagttatttagaatgaccgttttcaa
tgctcctttgaaaaatccagaataattctcttttgcccatgtgctttcag
gatgttgaccaagaataaataatgtaacaatgtactctagacccaatgta
gttcataagtccaccatctcatgcctatggatgctagatctgaagaagct
gcttggtgtttttctaagcccatcttttaaacaaaaagtacaattttaaa
agtaacaatgagaaaactagtggtgggagagaataccccacaacattaaa
atctgtgtgagatttagtagtacttaccacagcctttcacttagaggact
gtttcctaggaatccctgtgatgaccactggtggttagtatgctgttctg
cccactttgctgtcaccagagtatagttatccacatccccagaagattat
aaatcactgccttctgatactcacctctatactagtggattttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_138841092_138841938
seq2: B6Ng01-099N23.b_48_916

seq1  GAATTCTGTGACAGTGTTCTATAAAGAAGAAGACAAACGAGCATGAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGACAGTGTTCTATAAAGAAGAAGACAAACGAGCATGAAGAG  50

seq1  AGGACAGGAAATTTGAATCCTAAATGTGACTTCCTGTATGAAAACATGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGGAAATTTGAATCCTAAATGTGACTTCCTGTATGAAAACATGTA  100

seq1  ACTTTGGGCAATGACTTTCATTTTCCCTTGATGATGGAAGAAGATGAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGGCAATGACTTTCATTTTCCCTTGATGATGGAAGAAGATGAGAT  150

seq1  TCCCTGGATTCAAGAAGACTCTATCTAAAAAATGCATTTAATAAATAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGATTCAAGAAGACTCTATCTAAAAAATGCATTTAATAAATAATT  200

seq1  TAAATAAAATACATCCCCATTGGCCCCTAAACAAAATTCATTTTTATCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAATACATCCCCATTGGCCCCTAAACAAAATTCATTTTTATCAT  250

seq1  TTATAGAACATTTTGTCATAAGCTTTACTTAATACCACATTTCTCGATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAACATTTTGTCATAAGCTTTACTTAATACCACATTTCTCGATTC  300

seq1  TGGGTCTACATCCAGAATGTGTGCGATTCATCTGAGTCACACTTGCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTACATCCAGAATGTGTGCGATTCATCTGAGTCACACTTGCTGTG  350

seq1  TGAAACCAAATCCACAGGGGACTCTGGTTAAAAATTCTTTTAAGTCAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCAAATCCACAGGGGACTCTGGTTAAAAATTCTTTTAAGTCAATA  400

seq1  TTTTAAAAGTATTATTGGGACACTTCATTTTCAGTCATTTATTTGTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAGTATTATTGGGACACTTCATTTTCAGTCATTTATTTGTATTT  450

seq1  TGCATTTATTTAGATCATTTTGAACTATATGAATATATATATATATACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTATTTAGATCATTTTGAACTATATGAATATATATATATATACAC  500

seq1  ACATACATGTATTGTTATTTTGTTTGAAAGTTATATATATGCATATATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATGTATTGTTATTTTGTTTGAAAGTTATATATATGCATATATAC  550

seq1  ACTCAAATGACTCTCCCCACATTCTCTTATCTCCTTTCCACCTATATCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAATGACTCTCCCCACATTCTCTTATCTCCTTTCCACCTATATCAA  600

seq1  GATGTTCTGTCTTTCCTCCAGTTCCTTTCCCACATCATGATTGTGGTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCTGTCTTTCCTCCAGTTCCTTTCCCACATCATGATTGTGGTTTG  650

seq1  TGAAATGTGGTTTAATCAAGTCATTCTCTGTAATTTCTGTATTGTAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGTGGTTTAATCAAGTCATTCTCTGTAATTTCTGTATTGTAAATG  700

seq1  TTCATTGGAGCCTAAAGAGGACATATGCACACACATGTACACATATGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGGAGCCTAAAGAGGACATATGCACACACATGTACACATATGTGG  750

seq1  CTCTTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  800

seq1  TCTCATCCTCTCTCATTCTCTCTCTCTCTCATCCTCTCTCTCTCTCT---  847
      |||||  |||||||| ||||||||||||||| |||||||||||||||   
seq2  TCTCACTCTCTCTCAGTCTCTCTCTCTCTCACCCTCTCTCTCTCTCTCTC  850

seq1  -------------------  847
                         
seq2  TCTCACTCTCTCTCTCTCT  869

seq1: chr6_138975693_138976794
seq2: B6Ng01-099N23.g_68_1163 (reverse)

seq1  AAAAAAACCCACTAGTATTAGAGTGAAGTATTCAGGAAGGCAGTGATTTA  50
      ||||||| ||||||||| |||||   |||| ||| |||||||||||||| 
seq2  AAAAAAATCCACTAGTA-TAGAGGTGAGTA-TCA-GAAGGCAGTGATTT-  46

seq1  ATTATCTTTCTGGGGATGT-GATAACTATACTCTGGTTGACAGCAAAGTG  99
      || ||| |||||||||||| |||||||||||||||| |||||||||||||
seq2  ATAATC-TTCTGGGGATGTGGATAACTATACTCTGG-TGACAGCAAAGTG  94

seq1  GGCAGAACAGCATACTAACCA-CAGTGGTCATCACAGGGATTCCTAGGAA  148
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGCAGAACAGCATACTAACCACCAGTGGTCATCACAGGGATTCCTAGGAA  144

seq1  ACAGTCTTCTAAAGTTGAAAGGCTGTGGTAAGTACTACTAAATCTCACAC  198
      |||||| |||||   |||||||||||||||||||||||||||||||||||
seq2  ACAGTCCTCTAA--GTGAAAGGCTGTGGTAAGTACTACTAAATCTCACAC  192

seq1  AGATTTTAATGTTGTGGGGTATTCTTCTCCACCACTAGTTTTCTCATTGT  248
      |||||||||||||||||||||||||   ||||||||||||||||||||||
seq2  AGATTTTAATGTTGTGGGGTATTCTCTCCCACCACTAGTTTTCTCATTGT  242

seq1  TACTTTTAAAATTGTACTTTTTGTTTAAAAGATTGGCTTAGAAAAACACC  298
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TACTTTTAAAATTGTACTTTTTGTTTAAAAGATGGGCTTAGAAAAACACC  292

seq1  AAGCAGCTTCTTCAGATCTAGCATCCATAGGCATGAGATGGTGGACTTAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCTTCTTCAGATCTAGCATCCATAGGCATGAGATGGTGGACTTAT  342

seq1  GAACTACATTGGGTCTAGAGTACATTGTTACATTATTTATTCTTGGTCAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTACATTGGGTCTAGAGTACATTGTTACATTATTTATTCTTGGTCAA  392

seq1  CATCCTGAAAGCACATGGGCAAAAGAGAATTATTCTGGATTTTTCAAAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGAAAGCACATGGGCAAAAGAGAATTATTCTGGATTTTTCAAAGG  442

seq1  AGCATTGAAAACGGTCATTCTAAATAACTCCAAAGCTTGGCCAAGTAGGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGAAAACGGTCATTCTAAATAACTCCAAAGCTTGGCCAAGTAGGT  492

seq1  TAGTTTCAGAATTAGATAGAATCAGATATTTGAATCTTCGATGTATAATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCAGAATTAGATAGAATCAGATATTTGAATCTTCGATGTATAATA  542

seq1  GACCAATCATGAACTGAATAGTATTACTAATTCATGTCTAGCATCTTGAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAATCATGAACTGAATAGTATTACTAATTCATGTCTAGCATCTTGAT  592

seq1  AGGCCAGATTTGACTTAACATAAGCAAAAACATTATATCCAGTTTCTGAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGATTTGACTTAACATAAGCAAAAACATTATATCCAGTTTCTGAT  642

seq1  GATAGAAAATGCTACTTACAGACGATGTACTCTGTTGTTTGAGTTGTTCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAAAATGCTACTTACAGACGATGTACTCTGTTGTTTGAGTTGTTCA  692

seq1  AACAAAAACAGCTTGTGGAAACAGACTGAAAGCAATTTACAGGATGTCTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAACAGCTTGTGGAAACAGACTGAAAGCAATTTACAGGATGTCTG  742

seq1  GTGGGAGACTAGGCTTAACTCGTTCCAAATCATCCTGATCTGGTTATTCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGACTAGGCTTAACTCGTTCCAAATCATCCTGATCTGGTTATTCA  792

seq1  AATTTTGTTAGGGCCAGTTTTTTTTTCCAACATGAAGATAACACTGTCTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGTTAGGGCCAGTTTTTTTTTCCAACATGAAGATAACACTGTCTA  842

seq1  TCACATTATGTTTTTATAAAGACATGATATAATATGTAAAGAGTTTGTTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTATGTTTTTATAAAGACATGATATAATATGTAAAGAGTTTGTTA  892

seq1  TATATATAGCCTCTGTAGACAGTCCACACTGAAACTGTGATTTTAACATT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATAGCCTCTGTAGACAGTCCACACTGAAACTGTGATTTTAACATT  942

seq1  ATTTCTGACTTTAAAGTTTCAGACATCACACAATAATTTCAAACAATGTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGACTTTAAAGTTTCAGACATCACACAATAATTTCAAACAATGTT  992

seq1  TAAATATAAACAACATTTAAAGTTGTAAATTATCTTTAATGGGAAGATAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATAAACAACATTTAAAGTTGTAAATTATCTTTAATGGGAAGATAT  1042

seq1  TTTCTGAAACTTGTTTTTGGGTTTGTGTGTACCTCCATACTTCCATCTGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAAACTTGTTTTTGGGTTTGTGTGTACCTCCATACTTCCATCTGA  1092

seq1  ATTC  1102
      ||||
seq2  ATTC  1096