BAC Information

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BAC

Clone NameB6Ng01-100F17
Chromosome18 (Build37)6 (Build37)
Map Location 45,555,120 - 45,555,59174,779,237 - 74,780,354
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDcp2, Mcc, LOC100042883, Ythdc2, LOC626309, LOC225457, LOC100042900
Downstream geneKcnn2, Trim36, LOC100042905, Pggt1b, Ccdc112, EG225468, LOC100042916
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100F17.bB6Ng01-100F17.g
ACCDH909880DH909881
length1,0001,096
definitionDH909880|Mus musculus domesticus DNA, BAC clone: B6Ng01-100F17, 5' end.DH909881|Mus musculus domesticus DNA, BAC clone: B6Ng01-100F17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(45,555,120 - 45,555,591)(74,779,237 - 74,780,354)
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagtttggaattt
taatggggattgcattgaatctgtagattgcttttggcaagatagccatt
tttacaatgttggtcctgccaatccatgagcatgggagatctttccatct
tctgagatcttctttaatttctttcttcaggacttgaagttttatcatac
agatctttcactcccttcgttagagtcacgcgagatatttatataattgg
tggctatgagaacggtgtgttcgctattttttttctcagcctgattattc

gaattcagtttgcttttgagtgaattgttctgtttggcatcaaactaact
ctggcaatctgttctaaacttctgcctccttgtcattatcttgctcattt
tgtcttcacctgtatcatgtctctggaaaattgttctcattaaactgcca
tctttctccctcactcactctgcactggtatcttaagtcacgtgcctttt
ctgcctgttcttaagacaatggagtgaatcctatatttgactcattctga
taaaactttttctgattcatcagtttgtcaatgcctcaattagatatcac
tctcaattatagctgtcgcacttgactaactaatcttaccttcattattt
ggaattaagagtatgcactctatgtgtgtctgtattccagttggaggaaa
taaaggtctgtggcttgtcttcattttagccagatcatagacctagaaga
tctttgaccatgagaccttttcagagaaaccatgttgttggattaaaaaa
aaggcctctatattatctatgcttgaggatctggacatggatatttatat
ttttcaaatggtgccttgaaattggatggctgaaaatgacaccattattt
ttttcttcccaatctacaatttctgttttgacaaatattttgtctctaag
cattttgagcatgaagaagaacaaaaataattagattttagtgatatttt
tgtttaattgtttgtttacaaattttattaatgacacctgctggcagata
atatcttctagacaggacgtgaagattcactcatagaataaaataacatt
cttttataaggaagatctacaaaatgacagcagatgataggctgatgtga
acagtttttctttcttttttttttttaaataaggttgcacccaagatgaa
gactacaggtaatcaatgtttgctaaagaagaatatctatttttctcaaa
gacaaaacacatggtaatctatccacttccaagtggtcagcatatcgaaa
tagaccatatatggtattttatgagtattgaccgttattttatgagttat
ttgtgagatgatgacacattatgatagtgaataattttgtatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_45555120_45555591
seq2: B6Ng01-100F17.b_580_1045 (reverse)

seq1  GAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAG  50
      |||||| |||||||||||| ||| ||| |||   ||||| ||||| ||||
seq2  GAATAATCAGGCTGAGAAAAAAAATAGCGAA--CACACCGTTCTC-ATAG  47

seq1  TCACAAATAATATAAAATATCTCGGCGTGACTCTAACTAAGGAAGTGAAA  100
       ||| ||| |||| ||||||||| ||||||||||||| |||| |||||||
seq2  CCACCAATTATAT-AAATATCTC-GCGTGACTCTAACGAAGGGAGTGAAA  95

seq1  GATCTGTATGATAAAAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGA  150
      |||||||||||| ||||||||||||| |||||||||||||||||||||||
seq2  GATCTGTATGAT-AAAACTTCAAGTC-CTGAAGAAAGAAATTAAAGAAGA  143

seq1  TCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACA  200
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGACCAACA  193

seq1  TTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGGTTCAATGCAATC  250
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATC  243

seq1  CCCATCAAAATTCC-AACTCAATTCTTCAACGAATTAGAAGGAGCAATTT  299
      ||||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  CCCATTAAAATTCCAAACTCAATTCTTCAACGAATTAGAAGGAGCAATTT  293

seq1  GCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAAGTCTTCTC  349
      |||||||||||||||||||||||||||| ||||||||||||| |||||||
seq2  GCAAATTCATCTGGAATAACAAAAAACCGAGGATAGCAAAAACTCTTCTC  343

seq1  AAGGATAAAAGAATCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTA  399
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAGGATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTA  393

seq1  CTACAGAGCAATTGTGGTAAAAACTGCATGGTACTGGTATAGAGACAGAC  449
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGAC  443

seq1  AAGTAGACCAATGGAATAGAATT  472
      |||| ||||||||||||||||||
seq2  AAGTGGACCAATGGAATAGAATT  466

seq1: chr6_74779237_74780354
seq2: B6Ng01-100F17.g_66_1161 (reverse)

seq1  ATATATACACAAATATATATAATATATTCATAAATGTGTCATTTATACTC  50
      ||||||||| |||| |||  | ||   |||| ||||||||| | || |||
seq2  ATATATACA-AAAT-TATTCACTA---TCAT-AATGTGTCA-TCAT-CTC  42

seq1  ACAAATATACTCATAAATATACTGTGTCAATATACTCATAAATATACTCA  100
      ||||||| ||||||||| |||  | ||||  ||||||||||| |||| ||
seq2  ACAAATA-ACTCATAAA-ATAACG-GTCA--ATACTCATAAA-ATAC-CA  85

seq1  TATATGTGTCTATTTCTGATTATTGCTGACCACTTGGAGTTGGATAGATT  150
      |||||| ||||||||| |||   |||||||||||||||  ||||||||||
seq2  TATATG-GTCTATTTC-GAT--ATGCTGACCACTTGGAAGTGGATAGATT  131

seq1  ACCATGTGTTTTGTCTTTGGAGAAAAATAGATATTCTTCTTTAGCAAACA  200
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACCATGTGTTTTGTCTTT-GAGAAAAATAGATATTCTTCTTTAGCAAACA  180

seq1  TTGATTACCTGTAGTTCTTCATCTTGGGTGCAACCTTATTTAAAAAAAAA  250
      |||||||||||||| |||||||||||||||||||||||||| ||||||||
seq2  TTGATTACCTGTAG-TCTTCATCTTGGGTGCAACCTTATTT-AAAAAAAA  228

seq1  AAAAGAAAGAAAAACTGTTCACATCAGCCTATCATCTGCTGTCATTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAGAAAAACTGTTCACATCAGCCTATCATCTGCTGTCATTTTGT  278

seq1  AGATCTTCCTTATAAAAGAATGTTATTTTATTCTATGAGTGAATCTTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTCCTTATAAAAGAATGTTATTTTATTCTATGAGTGAATCTTCAC  328

seq1  GTCCTGTCTAGAAGATATTATCTGCCAGCAGGTGTCATTAATAAAATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTCTAGAAGATATTATCTGCCAGCAGGTGTCATTAATAAAATTTG  378

seq1  TAAACAAACAATTAAACAAAAATATCACTAAAATCTAATTATTTTTGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAACAATTAAACAAAAATATCACTAAAATCTAATTATTTTTGTTC  428

seq1  TTCTTCATGCTCAAAATGCTTAGAGACAAAATATTTGTCAAAACAGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATGCTCAAAATGCTTAGAGACAAAATATTTGTCAAAACAGAAAT  478

seq1  TGTAGATTGGGAAGAAAAAAATAATGGTGTCATTTTCAGCCATCCAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATTGGGAAGAAAAAAATAATGGTGTCATTTTCAGCCATCCAATTT  528

seq1  CAAGGCACCATTTGAAAAATATAAATATCCATGTCCAGATCCTCAAGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCACCATTTGAAAAATATAAATATCCATGTCCAGATCCTCAAGCAT  578

seq1  AGATAATATAGAGGCCTTTTTTTTAATCCAACAACATGGTTTCTCTGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATATAGAGGCCTTTTTTTTAATCCAACAACATGGTTTCTCTGAAA  628

seq1  AGGTCTCATGGTCAAAGATCTTCTAGGTCTATGATCTGGCTAAAATGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTCATGGTCAAAGATCTTCTAGGTCTATGATCTGGCTAAAATGAAG  678

seq1  ACAAGCCACAGACCTTTATTTCCTCCAACTGGAATACAGACACACATAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCACAGACCTTTATTTCCTCCAACTGGAATACAGACACACATAGA  728

seq1  GTGCATACTCTTAATTCCAAATAATGAAGGTAAGATTAGTTAGTCAAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATACTCTTAATTCCAAATAATGAAGGTAAGATTAGTTAGTCAAGTG  778

seq1  CGACAGCTATAATTGAGAGTGATATCTAATTGAGGCATTGACAAACTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAGCTATAATTGAGAGTGATATCTAATTGAGGCATTGACAAACTGAT  828

seq1  GAATCAGAAAAAGTTTTATCAGAATGAGTCAAATATAGGATTCACTCCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGAAAAAGTTTTATCAGAATGAGTCAAATATAGGATTCACTCCAT  878

seq1  TGTCTTAAGAACAGGCAGAAAAGGCACGTGACTTAAGATACCAGTGCAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAAGAACAGGCAGAAAAGGCACGTGACTTAAGATACCAGTGCAGA  928

seq1  GTGAGTGAGGGAGAAAGATGGCAGTTTAATGAGAACAATTTTCCAGAGAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGAGGGAGAAAGATGGCAGTTTAATGAGAACAATTTTCCAGAGAC  978

seq1  ATGATACAGGTGAAGACAAAATGAGCAAGATAATGACAAGGAGGCAGAAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACAGGTGAAGACAAAATGAGCAAGATAATGACAAGGAGGCAGAAG  1028

seq1  TTTAGAACAGATTGCCAGAGTTAGTTTGATGCCAAACAGAACAATTCACT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAACAGATTGCCAGAGTTAGTTTGATGCCAAACAGAACAATTCACT  1078

seq1  CAAAAGCAAACTGAATTC  1118
      ||||||||||||||||||
seq2  CAAAAGCAAACTGAATTC  1096