BAC Information

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BAC

Clone NameB6Ng01-101I05
Chromosome6 (Build37)
Map Location 104,223,008 - 104,341,948
singlet/doubletdoublet
Overlap genenone
Upstream geneChl1, LOC666141, LOC100043345
Downstream geneCntn6, LOC384470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101I05.bB6Ng01-101I05.g
ACCDH910673DH910674
length7231,173
definitionDH910673|Mus musculus domesticus DNA, BAC clone: B6Ng01-101I05, 5' end.DH910674|Mus musculus domesticus DNA, BAC clone: B6Ng01-101I05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,341,227 - 104,341,948)(104,223,008 - 104,224,195)
sequence
gaattcattatatgtcatgaactgccctaaacacatggcactgtggcatt
taatcctcagaagcactttgcttggcagaagctattggtgaaatagaaac
ctgcagttggtgaagttaagtcactctctgaggttatactgaaacctttg
caggaaggttcaacaggtgggagctccttctttgtcttatgttttcattg
cagatgaaagagaacaattgtaatgagacaaaaacttcattcatcacact
gtgtgcaaccatttaatttccacagcattacacagaaagggacatccccc
cccaccccaggataaatatttaaacctcccccaaaaaaatgtttttaaaa
aaattgtaaaattaccatatcaattggccagatcacccagtactcccaga
gactaaaccaccaaccaaggagtgtatagggagggaatccatggctccaa
atacttatgtagcagaggatggccttgcctgacagcagtggaagggaagg
cccttggtcctgtctaggtttgatgccccagagtaggggaaggctggagt
ggtggtggcagcaaagggtggatgggttagggagcaccctcatagaggca
aaggagaggggaaagaggacagatgtgggatgggaggtttgtggaggggt
agccagaaagtttgagatgtaaatgaatggaatgattaataaataaaaaa
aatgcaaaaaaaatttaaattgg
gaattctatgtgtaaagagaaaggaaaccattcagagacctgggatatgg
gaagtggtaggtaaggaaagaaatagatgacattaataaatttcataagt
tcctactttcatatttgaagagtaattatgactgtggcccttggctatat
atgttacaccttatgagacaaagggagacatattaaaatacctataagga
agttttcagtggtttatattatttgtgtgagggaagaagtgctaaaatga
gggtcaaggttataagccttttttgtatacttaacataattcaacagaac
tcaggacatatatttttccgtttttgactaagaaaactaggaaattatta
ggcagtgacatcttgatcttgagttggccatttaaattgggactagttag
tcctaaattttagtgtactgtattttatagcagagaatttcataaattaa
ctcttattagacactaatttagtgagcatgacattatgaattgatttgga
gtttgcacaagcattgtcttatggagcatatatgaagctgtagcatcctt
taaggaatttctctcaatcacttacttccataaacatggatcagatctcc
atcttaggaaaatcccgttgatctcactagtgagttttttcattggtact
tgctctagtgcatattaccttgctcctagttcatattccatgcgcatatc
accacattcaaatcaattctaggtcaatagctcgcatagacaaatataaa
ggggttgataacatgtttgtgtttttcatttacatattcctatataatat
attcatatatttattcatatattttattttataaatataaatataaacat
atcactttccctttcctccctacattgttcttcatatgcctccacttttt
ctctctctaattcatggattctttcccttggttttttaaaaaaatataca
tatacatgctcatcacatgagcatacacatacaaaaatatcctgctcact
ccaataaatgctacttatagtatatatttcagactgatcatgtgatatga
gtacttattatgtattttcctataggaagaaattattatccatcagcatt
cctttagtaccttggattctttctaagattggagacccagagaatgtccc
attcctcatgaaggaatctatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_104341227_104341948
seq2: B6Ng01-101I05.b_47_769 (reverse)

seq1  CCAATTT-AATTTTTTTTGCATTTTTTTTATTTATTAATCATTCCATTCA  49
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTAAATTTTTTTTGCATTTTTTTTATTTATTAATCATTCCATTCA  50

seq1  TTTACATCTCAAACTTTCTGGCTACCCCTCCACAAACCTCCCATCCCACA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATCTCAAACTTTCTGGCTACCCCTCCACAAACCTCCCATCCCACA  100

seq1  TCTGTCCTCTTTCCCCTCTCCTTTGCCTCTATGAGGGTGCTCCCTAACCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCTCTTTCCCCTCTCCTTTGCCTCTATGAGGGTGCTCCCTAACCC  150

seq1  ATCCACCCTTTGCTGCCACCACCACTCCAGCCTTCCCCTACTCTGGGGCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCCTTTGCTGCCACCACCACTCCAGCCTTCCCCTACTCTGGGGCA  200

seq1  TCAAACCTAGACAGGACCAAGGGCCTTCCCTTCCACTGCTGTCAGGCAAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCTAGACAGGACCAAGGGCCTTCCCTTCCACTGCTGTCAGGCAAG  250

seq1  GCCATCCTCTGCTACATAAGTATTTGGAGCCATGGATTCCCTCCCTATAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCCTCTGCTACATAAGTATTTGGAGCCATGGATTCCCTCCCTATAC  300

seq1  ACTCCTTGGTTGGTGGTTTAGTCTCTGGGAGTACTGGGTGATCTGGCCAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTGGTTGGTGGTTTAGTCTCTGGGAGTACTGGGTGATCTGGCCAA  350

seq1  TTGATATGGTAATTTTACAATTTTTTTAAAAACATTTTTTTGGGGGAGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATGGTAATTTTACAATTTTTTTAAAAACATTTTTTTGGGGGAGGT  400

seq1  TTAAATATTTATCCTGGGGTGGGGGGGGATGTCCCTTTCTGTGTAATGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATTTATCCTGGGGTGGGGGGGGATGTCCCTTTCTGTGTAATGCT  450

seq1  GTGGAAATTAAATGGTTGCACACAGTGTGATGAATGAAGTTTTTGTCTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAATTAAATGGTTGCACACAGTGTGATGAATGAAGTTTTTGTCTCA  500

seq1  TTACAATTGTTCTCTTTCATCTGCAATGAAAACATAAGACAAAGAAGGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATTGTTCTCTTTCATCTGCAATGAAAACATAAGACAAAGAAGGAG  550

seq1  CTCCCACCTGTTGAACCTTCCTGCAAAGGTTTCAGTATAACCTCAGAGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACCTGTTGAACCTTCCTGCAAAGGTTTCAGTATAACCTCAGAGAG  600

seq1  TGACTTAACTTCACCAACTGCAGGTTTCTATTTCACCAATAGCTTCTGCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTAACTTCACCAACTGCAGGTTTCTATTTCACCAATAGCTTCTGCC  650

seq1  AAGCAAAGTGCTTCTGAGGATTAAATGCCACAGTGCCATGTGTTTAGGGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAGTGCTTCTGAGGATTAAATGCCACAGTGCCATGTGTTTAGGGC  700

seq1  AGTTCATGACATATAATGAATTC  722
      |||||||||||||||||||||||
seq2  AGTTCATGACATATAATGAATTC  723

seq1: chr6_104223008_104224195
seq2: B6Ng01-101I05.g_68_1240

seq1  GAATTCTATGTGTAAAGAGAAAGGAAACCATTCAGAGACCTGGGATATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTGTAAAGAGAAAGGAAACCATTCAGAGACCTGGGATATGG  50

seq1  GAAGTGGTAGGTAAGGAAAGAAATAGATGACATTAATAAATTTCATAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGTAGGTAAGGAAAGAAATAGATGACATTAATAAATTTCATAAGT  100

seq1  TCCTACTTTCATATTTGAAGAGTAATTATGACTGTGGCCCTTGGCTATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTTTCATATTTGAAGAGTAATTATGACTGTGGCCCTTGGCTATAT  150

seq1  ATGTTACACCTTATGAGACAAAGGGAGACATATTAAAATACCTATAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACACCTTATGAGACAAAGGGAGACATATTAAAATACCTATAAGGA  200

seq1  AGTTTTCAGTGGTTTATATTATTTGTGTGAGGGAAGAAGTGCTAAAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCAGTGGTTTATATTATTTGTGTGAGGGAAGAAGTGCTAAAATGA  250

seq1  GGGTCAAGGTTATAAGCCTTTTTTGTATACTTAACATAATTCAACAGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAAGGTTATAAGCCTTTTTTGTATACTTAACATAATTCAACAGAAC  300

seq1  TCAGGACATATATTTTTCCGTTTTTGACTAAGAAAACTAGGAAATTATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACATATATTTTTCCGTTTTTGACTAAGAAAACTAGGAAATTATTA  350

seq1  GGCAGTGACATCTTGATCTTGAGTTGGCCATTTAAATTGGGACTAGTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGACATCTTGATCTTGAGTTGGCCATTTAAATTGGGACTAGTTAG  400

seq1  TCCTAAATTTTAGTGTACTGTATTTTATAGCAGAGAATTTCATAAATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAATTTTAGTGTACTGTATTTTATAGCAGAGAATTTCATAAATTAA  450

seq1  CTCTTATTAGACACTAATTTAGTGAGCATGACATTATGAATTGATTTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATTAGACACTAATTTAGTGAGCATGACATTATGAATTGATTTGGA  500

seq1  GTTTGCACAAGCATTGTCTTATGGAGCATATATGAAGCTGTAGCATCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCACAAGCATTGTCTTATGGAGCATATATGAAGCTGTAGCATCCTT  550

seq1  TAAGGAATTTCTCTCAATCACTTACTTCCATAAACATGGATCAGATCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAATTTCTCTCAATCACTTACTTCCATAAACATGGATCAGATCTCC  600

seq1  ATCTTAGGAAAATCCCGTTGATCTCACTAGTGAG-TTTTTCATTGGTACT  649
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATCTTAGGAAAATCCCGTTGATCTCACTAGTGAGTTTTTTCATTGGTACT  650

seq1  TGCTCTAGTGCATATTACCTTGCTCCTAGTTCATATTCCATGCGCATATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTAGTGCATATTACCTTGCTCCTAGTTCATATTCCATGCGCATATC  700

seq1  ACCACATTCAAATCAATTCTAGGTCAATAGCTCGCATAGACAAAATATAA  749
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACCACATTCAAATCAATTCTAGGTCAATAGCTCGCATAGAC-AAATATAA  749

seq1  AGGGGTTGATAACATGTTTGTGTTTTTCATTTACATATTCCTATATAATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTGATAACATGTTTGTGTTTTTCATTTACATATTCCTATATAATA  799

seq1  TATTCATATATTTATTCATATATTTTATTTTATAAAATATAAATATAAAC  849
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TATTCATATATTTATTCATATATTTTATTTTAT-AAATATAAATATAAAC  848

seq1  ATATCACTTTCCCTTTCCTCCCTACAATTGTTC-TCATATGCCTCCACTA  898
      ||||||||||||||||||||||||| ||||||| ||||||||||||||| 
seq2  ATATCACTTTCCCTTTCCTCCCTAC-ATTGTTCTTCATATGCCTCCACTT  897

seq1  TTTCTCTCTCTAGTTCATGGATTCTTTCCCTTGATTTTTTATATAAATAT  948
      |||||||||||| |||||||||||||||||||| ||||||| | ||||||
seq2  TTTCTCTCTCTAATTCATGGATTCTTTCCCTTGGTTTTTTAAAAAAATAT  947

seq1  ACATATACATGCTCATTCACATGAGCATACACATACATATATATCCTGCT  998
      ||||||||||||||| ||||||||||||||||||||| | ||||||||||
seq2  ACATATACATGCTCA-TCACATGAGCATACACATACAAAAATATCCTGCT  996

seq1  CACTCCATATAATGCTACTTATAAGTATATAATTTCAAGACTGACCATGT  1048
      |||||||   |||||||||||| ||||||| ||||| ||||||| |||||
seq2  CACTCCAATAAATGCTACTTAT-AGTATAT-ATTTC-AGACTGATCATGT  1043

seq1  GATATTGAGTAGCTAATTAGTGTATTTTCCCATAGGAAGAAAATTTATTA  1098
      |||| |||||| || |||| |||||||||| |||||||||||  ||||||
seq2  GATA-TGAGTA-CTTATTA-TGTATTTTCCTATAGGAAGAAA--TTATTA  1088

seq1  TTCTATCAGCATT-CTTTAGTTACCTGTAGTTCTTTATCTAAGATTGGAG  1147
       || ||||||||| |||||| |||||    |||||  |||||||||||||
seq2  -TCCATCAGCATTCCTTTAG-TACCTTGGATTCTT--TCTAAGATTGGAG  1134

seq1  CCCCAATGAGATGTCCCCATTCCATCTTAGAGTATCTATTA  1188
       ||||  || |||| ||||||||   | |  | ||||||||
seq2  ACCCAGAGA-ATGT-CCCATTCCTCATGAAGGAATCTATTA  1173