BAC Information

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BAC

Clone NameB6Ng01-103M07
Chromosome6 (Build37)
Map Location 114,389,724 - 114,503,369
singlet/doubletdoublet
Overlap geneHrh1
Upstream geneJagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2, 4931417G12Rik, 6720456B07Rik, Vhlh, Irak2, Tatdn2, Ghrl, Sec13, Atp2b2, Slc6a11, LOC666491, Slc6a1
Downstream geneAtg7, Vgll4, 1500001M20Rik, LOC100043420, Syn2, Timp4, Pparg, Tsen2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103M07.bB6Ng01-103M07.g
ACCDH912258DH912259
length757954
definitionDH912258|Mus musculus domesticus DNA, BAC clone: B6Ng01-103M07, 5' end.DH912259|Mus musculus domesticus DNA, BAC clone: B6Ng01-103M07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,389,724 - 114,390,479)(114,502,405 - 114,503,369)
sequence
gaattccagagccctaagaacaacataatgaagtttagttgttgtgatca
ccccactcctggtagcaatttcccatagtgctcacttttgcattgctgta
acaaaaatgtcccaaagaagctacttaagggaggctgggtttgctttggc
ccacagtttcagcagatttcagcctataataggtggaaattcctagaaga
acaatcccacccacatacaggagctctgcccagcttcagtaccatattga
ctctcctggggatttctcgcctcatagaaaccttagggtccatctgtata
aattcatacagcagcttgttataactttgactggggttttgttacatcta
tatgtaatgttgggaacaactggtattctaagacaacagtgacttctctc
catgtacatggagctgcattgggtaagatcagagcttcctttcaagctgg
ctacactcccattccctactctccttatgcaaaaggaaaggggaggttgt
ctatcaagagtctgttgtgtgccccatattgtgcagttcttctgtatgta
gtacctgggggcagagtaataattcctgtcaggtgtttacagggtcctga
ggggaatttcttcttctacaaatccctgatccaggagcttcattgatgcc
acagcagtgctgttccacatgctcacagagcttactgggtaggaggcaga
gagccactaatggcattgttcacaggcaatgggatatggggggatatggg
ggatgtt
gaattcctgcctccgtggaggctctccacaccccaagatcaaggccattc
ctgcactgctccaaacctgcagaactttggcgccacgccctcttgtgacc
cagctgtgcagatggtccaccgagcaaggctagccagggctacccaggga
agcccgctctccctccactaaagggaaggcaagagccctgcccaggccct
gcgcctgcatggccgcctctcagcttacccagcagtgaaggcagacaggc
ctaagttgaagagcctcggtgccagagggacttgctgctgccatagcggc
cttacagtccgcgggcagccctgcattgccttcaactaggatcgacccca
tctgcctgggtccctgcaaagcctacatcccaggcgggagtcccttttct
gagctggaaggctctgctttctttttcaaatgtgggctcttggtcgtgcc
catgcgcacaggcgcctgggaaaaatgggtccctagcacctagctgagag
gggtgtaactccagcctgctgcagcctctggctcaggcttctcaggaagg
ggctgcagtcctgctagcgaccccagaggaccccagcatgactgtcttcg
ggactgacggtctctgcagtgtcctgcgcaccttctggaagacgttgagc
cctttcttgttccctgactcgaccgttcctgggggtcttctttctcccgt
gaccggttcccgcgggaaatcaggatggtcctaggcctccaggaggcctg
cacctcacaaggggtcaccttcctcatcctacccgggatgggatccatgg
cacacaccgcctgagacgtcctactcctccaggatgctcccagaggactt
gagagagagcgagagagagagagagccgtgccagacagtgtcactgtccc
ccttctcgtggagcacacagcactgactacttcatgtcaaatcgagtgag
agtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_114389724_114390479
seq2: B6Ng01-103M07.b_43_799

seq1  GAATTCCAGAGCCCTAAGAACAACATAATGAAGTTTAGTTGTTGTGATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGCCCTAAGAACAACATAATGAAGTTTAGTTGTTGTGATCA  50

seq1  CCCCACTCCTGGTAGCAATTTCCCATAGTGCTCACTTTTGCATTGCTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTCCTGGTAGCAATTTCCCATAGTGCTCACTTTTGCATTGCTGTA  100

seq1  ACAAAAATGTCCCAAAGAAGCTACTTAAGGGAGGCTGGGTTTGCTTTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATGTCCCAAAGAAGCTACTTAAGGGAGGCTGGGTTTGCTTTGGC  150

seq1  CCACAGTTTCAGCAGATTTCAGCCTATAATAGGTGGAAATTCCTAGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTTTCAGCAGATTTCAGCCTATAATAGGTGGAAATTCCTAGAAGA  200

seq1  ACAATCCCACCCACATACAGGAGCTCTGCCCAGCTTCAGTACCATATTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCCCACCCACATACAGGAGCTCTGCCCAGCTTCAGTACCATATTGA  250

seq1  CTCTCCTGGGGATTTCTCGCCTCATAGAAACCTTAGGGTCCATCTGTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTGGGGATTTCTCGCCTCATAGAAACCTTAGGGTCCATCTGTATA  300

seq1  AATTCATACAGCAGCTTGTTATAACTTTGACTGGGGTTTTGTTACATCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATACAGCAGCTTGTTATAACTTTGACTGGGGTTTTGTTACATCTA  350

seq1  TATGTAATGTTGGGAACAACTGGTATTCTAAGACAACAGTGACTTCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAATGTTGGGAACAACTGGTATTCTAAGACAACAGTGACTTCTCTC  400

seq1  CATGTACATGGAGCTGCATTGGGTAAGATCAGAGCTTCCTTTCAAGCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACATGGAGCTGCATTGGGTAAGATCAGAGCTTCCTTTCAAGCTGG  450

seq1  CTACACTCCCATTCCCTACTCTCCTTATGCAAAAGGAAAGGGGAGGTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTCCCATTCCCTACTCTCCTTATGCAAAAGGAAAGGGGAGGTTGT  500

seq1  CTATCAAGAGTCTGTTGTGTGCCCCATATTGTGCAGTTCTTCTGTATGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAAGAGTCTGTTGTGTGCCCCATATTGTGCAGTTCTTCTGTATGTA  550

seq1  GTACCTGGGGGCAGAGTAATAATTCCTGTCAGGTGTTTACAGGGTCCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTGGGGGCAGAGTAATAATTCCTGTCAGGTGTTTACAGGGTCCTGA  600

seq1  GGGGAATTTCTTCTTCTACAAATCCCTGATCCAGGAGCTTCATTGATGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATTTCTTCTTCTACAAATCCCTGATCCAGGAGCTTCATTGATGCC  650

seq1  ACAGCAGTGCTGTTCCACATGCTCACAGAGCTTACTGGGTAGGAGGCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGTGCTGTTCCACATGCTCACAGAGCTTACTGGGTAGGAGGCAGA  700

seq1  GAGCCACTAATGGCATTGTTCACAGGCAATGGGATATGGGGGGATAT-GG  749
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAGCCACTAATGGCATTGTTCACAGGCAATGGGATATGGGGGGATATGGG  750

seq1  GGATGTT  756
      |||||||
seq2  GGATGTT  757

seq1: chr6_114502405_114503369
seq2: B6Ng01-103M07.g_67_1020 (reverse)

seq1  CACTCTCCACTCGATTTGACATGAATGTAGTCAGTTGCTGTGTGGCTCCA  50
      |||||| |||||||||||||||||| |||||||| |||||||| ||||||
seq2  CACTCT-CACTCGATTTGACATGAA-GTAGTCAG-TGCTGTGT-GCTCCA  46

seq1  GGAAAGGGGGCACAGTGGACACTGTCTGGCACGGCCTCTCTCTCTCTCTC  100
       || | |||| ||||| ||||||||||||||||| |||||||||||||||
seq2  CGAGAAGGGGGACAGT-GACACTGTCTGGCACGG-CTCTCTCTCTCTCTC  94

seq1  GCTCTCTCGCCAAGTCCCTCTTGGGAGCATCCTGGAGGAGTAGGACGTCC  150
      ||||||||  ||||| |||| ||||||||||||||||||||||||||| |
seq2  GCTCTCTC-TCAAGT-CCTC-TGGGAGCATCCTGGAGGAGTAGGACGT-C  140

seq1  TCAGGCGGTGTGTGCCATGGATCCCATCCCGGGTAGGATGAGGAAGGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCGGTGTGTGCCATGGATCCCATCCCGGGTAGGATGAGGAAGGTGA  190

seq1  CCCCCTTGTGAGGTGCAGGCCTCCTGGAGGCCTAGGACCATCCTGATTTC  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CCCCTTGTGAGGTGCAGGCCTCCTGGAGGCCTAGGACCATCCTGATTTC  239

seq1  CCGCGGGAACCGGTCACGGGAGAAAGAAGACCCCCAGGAACGGTCGAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCGGGAACCGGTCACGGGAGAAAGAAGACCCCCAGGAACGGTCGAGTC  289

seq1  AGGGAACAAGAAAGGGCTCAACGTCTTCCAGAAGGTGCGCAGGACACTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACAAGAAAGGGCTCAACGTCTTCCAGAAGGTGCGCAGGACACTGC  339

seq1  AGAGACCGTCAGTCCCGAAGACAGTCATGCTGGGGTCCTCTGGGGTCGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCGTCAGTCCCGAAGACAGTCATGCTGGGGTCCTCTGGGGTCGCT  389

seq1  AGCAGGACTGCAGCCCCTTCCTGAGAAGCCTGAGCCAGAGGCTGCAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGACTGCAGCCCCTTCCTGAGAAGCCTGAGCCAGAGGCTGCAGCAG  439

seq1  GCTGGAGTTACACCCCTCTCAGCTAGGTGCTAGGGACCCATTTTTCCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGTTACACCCCTCTCAGCTAGGTGCTAGGGACCCATTTTTCCCAG  489

seq1  GCGCCTGTGCGCATGGGCACGACCAAGAGCCCACATTTGAAAAAGAAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCTGTGCGCATGGGCACGACCAAGAGCCCACATTTGAAAAAGAAAGC  539

seq1  AGAGCCTTCCAGCTCAGAAAAGGGACTCCCGCCTGGGATGTAGGCTTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTTCCAGCTCAGAAAAGGGACTCCCGCCTGGGATGTAGGCTTTGC  589

seq1  AGGGACCCAGGCAGATGGGGTCGATCCTAGTTGAAGGCAATGCAGGGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACCCAGGCAGATGGGGTCGATCCTAGTTGAAGGCAATGCAGGGCTG  639

seq1  CCCGCGGACTGTAAGGCCGCTATGGCAGCAGCAAGTCCCTCTGGCACCGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCGGACTGTAAGGCCGCTATGGCAGCAGCAAGTCCCTCTGGCACCGA  689

seq1  GGCTCTTCAACTTAGGCCTGTCTGCCTTCACTGCTGGGTAAGCTGAGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTCAACTTAGGCCTGTCTGCCTTCACTGCTGGGTAAGCTGAGAGG  739

seq1  CGGCCATGCAGGCGCAGGGCCTGGGCAGGGCTCTTGCCTTCCCTTTAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCATGCAGGCGCAGGGCCTGGGCAGGGCTCTTGCCTTCCCTTTAGTG  789

seq1  GAGGGAGAGCGGGCTTCCCTGGGTAGCCCTGGCTAGCCTTGCTCGGTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGAGCGGGCTTCCCTGGGTAGCCCTGGCTAGCCTTGCTCGGTGGA  839

seq1  CCATCTGCACAGCTGGGTCACAAGAGGGCGTGGCGCCAAAGTTCTGCAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGCACAGCTGGGTCACAAGAGGGCGTGGCGCCAAAGTTCTGCAGG  889

seq1  TTTGGAGCAGTGCAGGAATGGCCTTGATCTTGGGGTGTGGAGAGCCTCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGCAGTGCAGGAATGGCCTTGATCTTGGGGTGTGGAGAGCCTCCA  939

seq1  CGGAGGCAGGAATTC  965
      |||||||||||||||
seq2  CGGAGGCAGGAATTC  954